Tex21 (testis expressed 21) - Rat Genome Database

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Gene: Tex21 (testis expressed 21) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Tex21
Name: testis expressed 21
RGD ID: 1560347
Description:
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC299152; MGC114468; similar to testis expressed gene 21; testis expressed gene 21
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86100,664,982 - 100,705,057 (-)NCBIGRCr8
mRatBN7.2694,931,388 - 94,969,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl694,931,392 - 94,969,330 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx695,324,469 - 95,362,433 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0695,622,968 - 95,660,936 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0695,051,779 - 95,089,741 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0699,236,653 - 99,274,350 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl699,236,653 - 99,274,269 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06108,648,678 - 108,685,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4698,798,019 - 98,840,865 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera693,357,208 - 93,394,205 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Variants

.
Variants in Tex21
284 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:31
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000058675
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)689762877106752806Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat

Markers in Region
D6Mit1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2694,968,928 - 94,969,056 (+)MAPPERmRatBN7.2
Rnor_6.0699,273,921 - 99,274,048NCBIRnor6.0
Rnor_5.06108,684,958 - 108,685,085UniSTSRnor5.0
RGSC_v3.4698,840,516 - 98,840,644RGDRGSC3.4
RGSC_v3.4698,840,517 - 98,840,644UniSTSRGSC3.4
RGSC_v3.1698,843,972 - 98,844,100RGD
Celera693,393,857 - 93,393,984UniSTS
Cytogenetic Map6q24UniSTS
AU049679  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2694,968,935 - 94,969,052 (+)MAPPERmRatBN7.2
Rnor_6.0699,273,928 - 99,274,044NCBIRnor6.0
Rnor_5.06108,684,965 - 108,685,081UniSTSRnor5.0
RGSC_v3.4698,840,524 - 98,840,640UniSTSRGSC3.4
Celera693,393,864 - 93,393,980UniSTS
Cytogenetic Map6q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 4 4 7
Low 21 20 2 20 1 12
Below cutoff 1 30 26 15 16 15 4 5 71 25 20 11 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000058675   ⟹   ENSRNOP00000055470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl694,931,392 - 94,969,277 (-)Ensembl
Rnor_6.0 Ensembl699,236,653 - 99,274,269 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088808   ⟹   ENSRNOP00000073922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl694,931,392 - 94,969,330 (-)Ensembl
Rnor_6.0 Ensembl699,236,668 - 99,273,033 (-)Ensembl
RefSeq Acc Id: NM_001025658   ⟹   NP_001020829
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,704,925 (-)NCBI
mRatBN7.2694,931,388 - 94,969,277 (-)NCBI
Rnor_6.0699,236,653 - 99,274,269 (-)NCBI
Rnor_5.06108,648,678 - 108,685,353 (-)NCBI
RGSC_v3.4698,798,019 - 98,840,865 (-)RGD
Celera693,357,208 - 93,394,205 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240226   ⟹   XP_006240288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,705,057 (-)NCBI
mRatBN7.2694,931,388 - 94,969,409 (-)NCBI
Rnor_6.0699,236,660 - 99,274,350 (-)NCBI
Rnor_5.06108,648,678 - 108,685,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240227   ⟹   XP_006240289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,704,996 (-)NCBI
mRatBN7.2694,931,388 - 94,969,348 (-)NCBI
Rnor_6.0699,236,660 - 99,274,350 (-)NCBI
Rnor_5.06108,648,678 - 108,685,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112011   ⟹   XP_038967939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,705,057 (-)NCBI
mRatBN7.2694,931,388 - 94,969,409 (-)NCBI
RefSeq Acc Id: XM_063261717   ⟹   XP_063117787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,986 - 100,705,057 (-)NCBI
RefSeq Acc Id: XM_063261718   ⟹   XP_063117788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,986 - 100,704,996 (-)NCBI
RefSeq Acc Id: XM_063261719   ⟹   XP_063117789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,987 - 100,705,057 (-)NCBI
RefSeq Acc Id: XM_063261720   ⟹   XP_063117790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,987 - 100,704,996 (-)NCBI
RefSeq Acc Id: XM_063261721   ⟹   XP_063117791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,704,995 (-)NCBI
RefSeq Acc Id: XM_063261722   ⟹   XP_063117792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,982 - 100,705,057 (-)NCBI
RefSeq Acc Id: XM_063261723   ⟹   XP_063117793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,983 - 100,705,057 (-)NCBI
RefSeq Acc Id: XM_063261724   ⟹   XP_063117794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,983 - 100,704,996 (-)NCBI
RefSeq Acc Id: XM_063261725   ⟹   XP_063117795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,704,996 (-)NCBI
RefSeq Acc Id: XM_063261726   ⟹   XP_063117796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,705,057 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001020829   ⟸   NM_001025658
- UniProtKB: Q4V8E7 (UniProtKB/TrEMBL),   A0A0G2K6S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240288   ⟸   XM_006240226
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240289   ⟸   XM_006240227
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000055470   ⟸   ENSRNOT00000058675
RefSeq Acc Id: ENSRNOP00000073922   ⟸   ENSRNOT00000088808
RefSeq Acc Id: XP_038967939   ⟸   XM_039112011
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117792   ⟸   XM_063261722
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063117793   ⟸   XM_063261723
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063117794   ⟸   XM_063261724
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063117787   ⟸   XM_063261717
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063117788   ⟸   XM_063261718
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063117789   ⟸   XM_063261719
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063117790   ⟸   XM_063261720
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063117796   ⟸   XM_063261726
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063117795   ⟸   XM_063261725
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063117791   ⟸   XM_063261721
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K6S3-F1-model_v2 AlphaFold A0A0G2K6S3 1-565 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694673
Promoter ID:EPDNEW_R5196
Type:single initiation site
Name:Tex21_1
Description:testis expressed 21
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0699,274,334 - 99,274,394EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560347 AgrOrtholog
BioCyc Gene G2FUF-37068 BioCyc
Ensembl Genes ENSRNOG00000038496 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000058675 ENTREZGENE
  ENSRNOT00000058675.4 UniProtKB/TrEMBL
  ENSRNOT00000088808 ENTREZGENE
  ENSRNOT00000088808.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7454996 IMAGE-MGC_LOAD
InterPro CCDC170-like UniProtKB/TrEMBL
KEGG Report rno:299152 UniProtKB/TrEMBL
MGC_CLONE MGC:114468 IMAGE-MGC_LOAD
NCBI Gene 299152 ENTREZGENE
PANTHER PTHR18863 UniProtKB/TrEMBL
  TESTIS-EXPRESSED GENE 21 UniProtKB/TrEMBL
PhenoGen Tex21 PhenoGen
RatGTEx ENSRNOG00000038496 RatGTEx
UniProt A0A0G2K6S3 ENTREZGENE, UniProtKB/TrEMBL
  Q4V8E7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-06-09 Tex21  testis expressed 21  Tex21  testis expressed gene 21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Tex21  testis expressed gene 21  LOC299152  similar to testis expressed gene 21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC299152  similar to testis expressed gene 21      Symbol and Name status set to provisional 70820 PROVISIONAL