Pabir2 (PABIR family member 2) - Rat Genome Database

Name: Pabir2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Pabir2 (PABIR family member 2) Rattus norvegicus

Analyze

Symbol:

Pabir2

Name:

PABIR family member 2

RGD ID:

1560129

Description:

Predicted to enable protein serine/threonine phosphatase inhibitor activity. Orthologous to human PABIR2 (PABIR family member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; all-trans-retinoic acid.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Fam122b; family with sequence similarity 122B; LOC100909732; LOC501647; protein FAM122B-like; RGD1560129; similar to RIKEN cDNA 4632404H22

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PABIR2 (PABIR family member 2)	HGNC	Ensembl, HomoloGene, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pabir2 (PABIR family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pabir2 (PABIR family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PABIR2 (PABIR family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PABIR2 (PABIR family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pabir2 (PABIR family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PABIR2 (PABIR family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PABIR2 (PABIR family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pabir2 (PABIR family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PABIR1 (PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1)	HGNC	OrthoDB
Homo sapiens (human):	PHF1 (PHD finger protein 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PABIR2 (PABIR family member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pabir2 (PABIR family member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fam122b (family with sequence similarity 122B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	F46H5.2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG4497	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	pabir2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	137,908,653 - 137,935,153 (-)	NCBI		GRCr8
mRatBN7.2	X	132,989,124 - 133,015,625 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	132,989,124 - 133,015,580 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	135,149,167 - 135,175,114 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	138,732,031 - 138,757,978 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	136,297,700 - 136,323,647 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	157,853,453 - 157,879,939 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	157,854,272 - 157,879,928 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	X	158,350,347 - 158,376,783 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	152,478,768 - 152,505,246 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	140,193,647 - 140,219,594	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Cytogenetic Map	X	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP)

alpha-phellandrene (ISO)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

caffeine (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

inulin (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

quercetin (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

topotecan (EXP)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

triticonazole (EXP)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein serine/threonine phosphatase inhibitor activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Pabir2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	137,908,653 - 137,935,153 (-)	NCBI		GRCr8
mRatBN7.2	X	132,989,124 - 133,015,625 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	132,989,124 - 133,015,580 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	135,149,167 - 135,175,114 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	138,732,031 - 138,757,978 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	136,297,700 - 136,323,647 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	157,853,453 - 157,879,939 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	157,854,272 - 157,879,928 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	X	158,350,347 - 158,376,783 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	152,478,768 - 152,505,246 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	140,193,647 - 140,219,594	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Cytogenetic Map	X	q36	NCBI

PABIR2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	134,769,566 - 134,797,205 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	134,769,566 - 134,797,232 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	133,903,596 - 133,931,235 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	133,731,262 - 133,758,378 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	134,290,355 - 134,318,021 (-)	NCBI		Celera
Cytogenetic Map	X	q26.3	NCBI
HuRef	X	123,302,899 - 123,329,379 (-)	NCBI		HuRef
CHM1_1	X	133,815,204 - 133,842,706 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	133,094,679 - 133,122,269 (-)	NCBI		T2T-CHM13v2.0

Pabir2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	52,332,292 - 52,358,728 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	52,332,292 - 52,358,682 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	53,243,415 - 53,269,850 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	53,243,415 - 53,269,805 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	50,596,592 - 50,622,982 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	49,488,061 - 49,513,658 (-)	NCBI		MGSCv36	mm8
Celera	X	40,668,449 - 40,695,187 (-)	NCBI		Celera
Cytogenetic Map	X	A5	NCBI
cM Map	X	29.43	NCBI

Pabir2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955473	208,697 - 231,838 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955473	207,755 - 231,781 (+)	NCBI	ChiLan1.0	ChiLan1.0

PABIR2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	134,205,009 - 134,232,247 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	134,208,607 - 134,235,784 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	123,920,228 - 123,946,120 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	134,216,272 - 134,241,898 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	134,216,312 - 134,241,887 (-)	Ensembl	panpan1.1		panPan2

PABIR2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	105,367,621 - 105,416,545 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	105,200,746 - 105,416,596 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	91,506,991 - 91,527,288 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	107,091,987 - 107,278,986 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	107,091,840 - 107,279,077 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	104,669,579 - 104,689,871 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	106,535,767 - 106,556,048 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	106,327,249 - 106,347,550 (-)	NCBI		UU_Cfam_GSD_1.0

Pabir2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	103,530,438 - 103,574,110 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936691	383,986 - 410,875 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936691	383,976 - 426,911 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PABIR2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	110,593,937 - 110,617,787 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	110,570,091 - 110,617,779 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	126,460,757 - 126,481,778 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PABIR2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	109,939,033 - 109,965,435 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	109,941,606 - 109,964,434 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	47,545,423 - 47,571,991 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pabir2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624797	14,475,347 - 14,496,427 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624797	14,473,450 - 14,496,732 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pabir2
1 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1768
Count of miRNA genes:	370
Interacting mature miRNAs:	537
Transcripts:	ENSRNOT00000003145, ENSRNOT00000066874
Prediction methods:	Microtar, Miranda, Pita, Pita,Microtar, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	103312877	148312877	Rat
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	103312877	148312877	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	112934952	138400867	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat

Markers in Region

px-42a6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	132,996,306 - 132,996,446 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	157,872,617 - 157,872,756	NCBI	Rnor6.0
Rnor_6.0	X	158,369,449 - 158,369,588	NCBI	Rnor6.0
Rnor_5.0	X	152,996,092 - 152,996,231	UniSTS	Rnor5.0
Rnor_5.0	X	152,497,924 - 152,498,063	UniSTS	Rnor5.0
RGSC_v3.4	X	140,200,830 - 140,200,969	UniSTS	RGSC3.4
Cytogenetic Map	X	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium
Low		12
Below cutoff	3	29	17	14	5	14	1	1	45	21	33	10	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001166586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001842619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000003145 ⟹ ENSRNOP00000003145

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	157,854,325 - 157,877,230 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000066874 ⟹ ENSRNOP00000060417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	132,989,137 - 133,015,580 (-)	Ensembl
Rnor_6.0 Ensembl	X	158,350,347 - 158,376,783 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080538 ⟹ ENSRNOP00000070925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	158,351,156 - 158,374,062 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089777 ⟹ ENSRNOP00000069628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	132,989,124 - 133,015,072 (-)	Ensembl
Rnor_6.0 Ensembl	X	157,854,272 - 157,879,928 (+)	Ensembl

RefSeq Acc Id:

NM_001166586 ⟹ NP_001160058

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	137,908,653 - 137,934,600 (-)	NCBI
mRatBN7.2	X	132,989,124 - 133,015,072 (-)	NCBI
Rnor_6.0	X	157,853,993 - 157,879,939 (+)	NCBI
Rnor_5.0	X	152,478,768 - 152,505,246 (+)	NCBI
RGSC_v3.4	X	140,193,647 - 140,219,594 (-)	RGD

Sequence:

show sequence

TTTTATCCTCTTCCATTATGCCCTGCATTTCCAGTTATCCTTTATCAACCCCTGTGCCTCTTTT
TCCTTCTCCCACCTTTGTCTCTCCTCCCTCCTCTTTTTCATCCTGTCACCCTCGCAACACCAGC
TCTACATCCTCCTCCGCCCGCCCCCCACATCCTTCCTCATCTGCATCCTCCTCTCCTACTTTTC
TCCGCCCTCGCGCCCAAGCCTCCGCCCATTAGCCCCCGCCCCCAGCTGCCAGTCCCCAGCAGCT
CAGTCCTGCAGTGAGTCCATAGCAAAGCACCAGGAGCTGAGAGCACTGCCGGCTGTGCTGGCTA
GCAAGTCTCCGAATGGCTCAGGAGAAAATGGAGCTGGATTTTGAGGCTGACACATCTGAGGGGG
GCACCCTGAGACGGTCCAACAGTGCTCCCCTGATCCATGTGCTCAGTGACCTTTCCCAGGTTTT
TGAGCCATATCCACTTAGAACTGGGAGGAACAGTGCGACAGTTATGAGCCATCATAGCTTGGAA
GAAGGCCTGGATTTGATGAACAGAGAAACTGCAAATGAAAGAGAACCACAAGGAGGAATGCAGA
TAAGCCACTCATGGGACGAAAGCTTAAGCCTGAGCGATAGTGATTTTGACAAGCCAGAGAAATT
ATATTCTCCAAAGAGAATTGACTTCACTCCAGTTTCTCCAGCGCCTTCCCCAACCAGAGGATTT
GGAAAGTGCACATCGCCATCCTTGCAAATGTTTGTGGGCAGCAGTGAGGTGCCACCAAGTTCTG
TTCCTAATCCAAGACATTTTTCAAGGAGGAGTCAGAGCCCAGTCAAGTGCATTAGGCCCAGCGT
TCTTGGTCCTCTTAAGAGAAAAGGGGAAATGGAGATAGAAAGCCAGCCTAAGAGACCGTTCCAA
GGAGCAACCAACATGCTGTCTACAGATGCTACACAATTGTCTGATTTCAGTTCATGTTCAGATA
TTTTGGATGGCAGTAGTGTCAGCAGTGGCTTGTCCTCAGACTCACTGGCTACAGGCAGCGCTCC
CGCAGAGTCTCCAGTAGCATGCTCCAATCCATGCTCTTCGTTCATCTTGATGGATGATCTCTCA
CCCAAGTGACTTACCCATTTCTGATTGAGTGTTTTAACTGTTTCCCACATAAAACATTCAGTGA
GGAATGCGGAGAACTTTGATCCACAGTGGGGATTAAAGTTTGGCAGATTGCAACCATTCCGATG
ATGCGCCTATTTCTGGGCATCTCTCCTCTAAAGTTCAATTTTGCAAGCAGTCACCTTACTAACA
TCTGTTTGGGCTGACCTCATTTTGCCTTTGATGACTAAAACTCAAATACACATTTTTGATTGCT
TGGATGACTTTTTTCCCTAGTGCCTCAAAGAGCACCTACTTTCAAACATTTAAGGGGAACACTA
ATGCATATTTTCTATAATTGTTCATTTCCCTCACAGTGGCAAAACAGAGTTGATCAGAAATTCT
CTTGCTTGAGAGATTGATAAAAATTCTGTTGACTACATACTTTCCCATCTCTTTATTTCATGGT
AATATTCAAATTGTTTTTGATTGCTATCAAATTTTCATTTCTTCTGCATCAGCTTTAAAGGACA
TTGTTTTGTTTCCCTTGCCTGTTTGAGCTGCTTCCTTGCCATTTCTCACCATGGGGAAGAAACC
CATAGTCGCTTCCATCACCACCCATATTGCTTCTTTGCTATTGGAATGTATGCAGTGGAGAGTG
ATTGTAGAGTGGAGAATGTGACTAGACTCACAGGATGCCTGCATTAGTCACCCCAGGTTCTTAG
GACATTGCTACCACAGTTGTTATTTCTCTCCCCAAACCTGGTGCCTTAAGGAATATGTAAAATA
TTGTTGATATTTCTAGGTGGTGTTATCAAGGAGAAGAAATTCCTGCCTTGACCAGATGTGTGGA
GCATCTACAAATGAACGAATAGTTATTTACACAAAGCACTGTACAAAAGCAAGCGTCCATGAAG
CTGTCAGTGTCTTGGGTAGTATTATGAGGCCTTAGGTGCCTTGGGGTACGTTGCCGTCATGTAG
GGGACATGTGTCGTAGGGTCTTGTGGAAATGGAAGCTTTCTGTATGTGGCTGCTATTCTGTTTG
CTTTGTTCCCGATTCCTTATTGTCCTTGCGTTTGTTCTGTCATGTGGTGACCTGGTGTTCTGGT
TTTGTATTGTGCTAGAGTCAGAACCCTCTTCTTGTCCTCGTTGCCCTATAGAGGTCAGTTCGAT
ATCTCTAAGGAAGCTTTGAGGAGCTGAAAAGGTCAGTGTGCTCCTGTGCCCTCTGCTTCCAGAA
GTTTTGTTGAGCTCTAAGCAGTGTATATGCAGTGTGACGTAACATATACTCTGTCATTTTTACA
AGAGAAAACTCCTGACTAAAATATTTAAGAAATCCAAGTGTGATCTATTGTGGCATTATTTATT
ATGTATTACACTAGAAATAGTGTAATAGTGTAATAGTACAATGTTTATGTTGTTAGATTTCTTT
TAATGTTCAACCTGGTGGGTGGACTATTTGTTTAATTTACCCATTAGAATCGTGATATTAAGTG
AATGTAAGAAACAAACAGAAATTGTTAAACCTAAGTCTTTTGAAGTCTAAAATCGTTGGAGGTG
GTTTGATGGTATTTACAGACTAGAAATTCGTGTGCTTGAAGCAAAACCTCTATTCTAATTATCA
CAGAACATCACTTAGCTTGCTGCAGCTCCATTATAGAATCGGGTTTGTTCTTCTGTTTACATTG
TAATCACTGTCATAACAGCTATTACTGGCTTGAGTTCCCATGTTACTTTAGCCTGTGAAAAGCT
CAGAATCCTCCAAACCTAACATAAACGTGCTGTTATAAGAATCACTCACTTGTGTGCTATTTTA
AAGAACCGTCTCTTTGATAGCACTGGTGTATCCACTCTGTTAATGAACCATATTGAAAGGCTTT
TGCCTTCATAATGATAAGAGATGAGTTTTTCTTTCAGGAGATTTGTCTGCCTTCACTCTTCTTC
TGTTTTATTTGACTTAAAGGGACACTTTGCAGTTCAAATTTAGAGTCCAAATTTAGGCCTGTTA
AGAAATAATCGTTGAAATGTGATGCTATCTGAAGGTGTGTTTAAAATTCGATGGTAAAAGCAGG
AGATTGAAATCGTCCCAATGGTGTGGTGAGGCGAAAGAGGCAGAAGGATTCAGTTTACTGTTTT
AGACCAACTCCTTTACTAATGATTCTAACTGAGTGTTTTAAATTCATTCTTTGCCATAAGCGTA
TCCAGTTCATTCTGATCACTCTTGCTCCCTACCCTCCCTCATCTCTCTCCTACTCATCAGTCAC
CACTTCTTTCTACAGATTCCTTTGCCACACTCTTGTTTTTTCCTTTGTGAACTAACCTTTTGTT
ATTGTTGTCTTCTATTGTTTAAATGGACTAGAAAGCTAAATTTGTGCAGGGATTGTTTTGAAAC
AAATAAAAATGGTAATATGCTAATCCACAGAGCAGCTTTGTTGACAGTACCCCTTTATTTTTAT
ATAAAGTCTAATATTTGAAATGTAGTTATTGTTACAAAGTAAAATTCTTTCTTCCTATTCTCAT
ATTATATCATATATTTTAAGGTTCTATTTGAAAACTACTACAAAAATGAAACCATAATAAAATC
CTATAGATACTGGTTTTGCTTGAATGACTTATAAATCACTGTTTTATGATAACTGCTTTTGGAA
TAATAGAAAGTTTTGTGAAATGTTGACCTAGTGTATATCCTGAGATTGTGAATTTAATAAAGTA
TATATACGTGTATAAAAAGATGGAATCATA

hide sequence

RefSeq Acc Id:

XM_006257643 ⟹ XP_006257705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	137,908,658 - 137,935,149 (-)	NCBI
mRatBN7.2	X	132,990,915 - 133,015,623 (-)	NCBI
Rnor_6.0	X	157,853,453 - 157,877,477 (+)	NCBI
Rnor_5.0	X	152,478,768 - 152,505,246 (+)	NCBI

Sequence:

show sequence

TGAGCGACAAGATGCGGAAGAGCTGGCCCCTCGGAGGCTCCCATTTCTGAAGCGTGGGAGGCAA
AAAGAGGCGGCAGGTTATAGAAATCAGTTTGAGCTCCAGAGGGTCCCACGGGTCATTAGAGCCA
ATAAGAGAGAGAAGCAGAGCCTCGGTGGCGCAGAGGGCCTATCCCTCTTCTAATTCCTGAAGGC
GGGCAGGGACCAGGGAGTGAAAAGCGCCATCCCTGCGCTGAGGGGCCCCGGGGACCGGGGCCCA
GAGCATGGCGGACTGGACAGAGACCCTGAGCATGTGGAGGTGGAGCAGCCGAGGCCGCCTGGCC
AGCTGTCAAGTCCTCGTTGCTAGCGCTGCAAAGGCAGCGACTGTAAATGTAGCCGAGCCGCGCT
TGCGGTCCTAGGCGGGAAAAATGACAGCATGAGTTCTGCTGCTACCTAGTTTCCTCCTCTTTCT
TTTTTTTCTGTGCTTTCCTCTCCACATTCCCCTTCCTCTTCCTTTTCCCATCCCTGTGCCCCTT
TACCCTGACCCTTGTCCTCCTTTCCCACTTTTATCCTCTTCCATTATGCCCTGCATTTCCAGTT
ATCCTTTATCAACCCCTGTGCCTCTTTTTCCTTCTCCCACCTTTGTCTCTCCTCCCTCCTCTTT
TTCATCCTGTCACCCTCGCAACACCAGCTCTACATCCTCCTCCGCCCGCCCCCCACATCCTTCC
TCATCTGCATCCTCCTCTCCTACTTTTCTCCGCCCTCGCGCCCAAGCCTCCGCCCATTAGCCCC
CGCCCCCAGCTGCCAGTCCCCAGCAGCTCAGTCCTGCAGTGAGTCCATAGCAAAGCACCAGGAG
CTGAGAGCACTGCCGGCTGTGCTGGCTAGCAAGTCTCCGAATGGCTCAGGAGAAAATGGAGCTG
GATTTTGAGGCTGACACATCTGAGGGGGGCACCCTGAGACGGTCCAACAGTGCTCCCCTGATCC
ATGTGCTCAGTGACCTTTCCCAGGTTTTTGAGCCATATCCACTTAGAACTGGGAGGAACAGTGC
GACAGTTATGAGCCATCATAGCTTGGAAGAAGGCCTGGATTTGATGAACAGAGAAACTGCAAAT
GAAAGAGAACCACAAGGAGGAATGCAGATAAGCCACTCATGGGACGAAAGCTTAAGCCTGAGCG
ATAGTGATTTTGACAAGCCAGAGAAATTATATTCTCCAAAGAGAATTGACTTCACTCCAGTTTC
TCCAGCGCCTTCCCCAACCAGAGGATTTGGAAAGTGCACATCGCCATCCTTGCAAATGTTTGTG
GGCAGCAGTGAGGTGCCACCAAGTTCTGTTCCTAATCCAAGACATTTTTCAAGCAGGAGGAGTC
AGAGCCCAGTCAAGTGCATTAGGCCCAGCGTTCTTGGTCCTCTTAAGAGAAAAGGGGAAATGGA
GATAGAAAGCCAGCCTAAGAGACCGTTCCAAGGAGCAACCAACATGCTGTCTACAGATGCTACA
CAATTGTCTGATTTCAGTTCATGTTCAGATATTTTGGATGGCAGTAGTGTCAGCAGTGGCTTGT
CCTCAGACTCACTGGCTACAGGCAGCGCTCCCGCAGAGTCTCCAGTAGCATGCTCCAATCCATG
CTCTTCGTTCATCTTGATGGATGATCTCTCACCCAAGTGACTTACCCATTTCTGATTGAGTGTT
TTAACTGTTTCCCACATAAAACATTCAGTGAGGAATGCGGAGAACTTTGATCCACAGTGGGGAT
TAAAGTTTGGCAGATTGCAACCATTCCGATGATGCGCCTATTTCTGGGCATCTCTCCTCTAAAG
TTCAATTTTGCAAGCAGTCACCTTACTAACATCTGTTTGGGCTGACCTCATTTTGCCTTTGATG
ACTAAAACTCAAATACACATTTTTGATTGCT

hide sequence

RefSeq Acc Id:

XM_006257648 ⟹ XP_006257710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	137,908,658 - 137,935,150 (-)	NCBI
mRatBN7.2	X	132,989,124 - 133,015,622 (-)	NCBI
Rnor_6.0	X	157,853,453 - 157,879,934 (+)	NCBI
Rnor_5.0	X	152,478,768 - 152,505,246 (+)	NCBI

Sequence:

show sequence

TGAGCGACAAGATGCGGAAGAGCTGGCCCCTCGGAGGCTCCCATTTCTGAAGCGTGGGAGGCAA
AAAGAGGCGGCAGGTTATAGAAATCAGTTTGAGCTCCAGAGGGTCCCACGGGTCATTAGAGCCA
ATAAGAGAGAGAAGCAGAGCCTCGGTGGCGCAGAGGGCCTATCCCTCTTCTAATTCCTGAAGGC
GGGCAGGGACCAGGGAGTGAAAAGCGCCATCCCTGCGCTGAGGGGCCCCGGGGACCGGGGCCCA
GAGCATGGCGGACTGGACAGAGACCCTGAGCATGTGGAGGTGGAGCAGCCGAGGCCGCCTGGCC
AGCTGTCAAGTCCTCGTTGCTAGCGCTGCAAAGGCAGCGACTGTAAATGTAGCCGAGCCGCGCT
TGCGGTCCTAGGCGGGAAAAATGACAGCATGAGTTCTGCTGCTACCTAGTTTCCTCCTCTTTCT
TTTTTTTCTGTGCTTTCCTCTCCACATTCCCCTTCCTCTTCCTTTTCCCATCCCTGTGCCCCTT
TACCCTGACCCTTGTCCTCCTTTCCCACTTTTATCCTCTTCCATTATGCCCTGCATTTCCAGTT
ATCCTTTATCAACCCCTGTGCCTCTTTTTCCTTCTCCCACCTTTGTCTCTCCTCCCTCCTCTTT
TTCATCCTGTCACCCTCGCAACACCAGCTCTACATCCTCCTCCGCCCGCCCCCCACATCCTTCC
TCATCTGCATCCTCCTCTCCTACTTTTCTCCGCCCTCGCGCCCAAGCCTCCGCCCATTAGCCCC
CGCCCCCAGCTGCCAGTCCCCAGCAGCTCAGTCCTGCAGTGAGTCCATAGCAAAGCACCAGGAG
CTGAGAGCACTGCCGGCTGTGCTGGCTAGCAAGTCTCCGAATGGCTCAGGAGAAAATGGAGCTG
GATTTTGAGGCTGACACATCTGAGGGGGGCACCCTGAGACGGTCCAACAGTGCTCCCCTGATCC
ATGTGCTCAGTGACCTTTCCCAGGTTTTTGAGCCATATCCACTTAGAACTGGGAGGAACAGTGC
GACAGTTATGAGCCATCATAGCTTGGAAGAAGGCCTGGATTTGATGAACAGAGAAACTGCAAAT
GAAAGAGAACCACAAGGAGGAATGCAGATAAGCCACTCATGGGACGAAAGCTTAAGCCTGAGCG
ATAGTGATTTTGACAAGCCAGAGAAATTATATTCTCCAAAGAGAATTGACTTCACTCCAGTTTC
TCCAGCGCCTTCCCCAACCAGAGGATTTGGAAAGTGCACATCGCCATCCTTGCAAATGTTTGTG
GGCAGCAGTGAGGTGCCACCAAGTTCTGTTCCTAATCCAAGACATTTTTCAAGGAGGAGTCAGA
GCCCAGTCAAGTGCATTAGGCCCAGCGTTCTTGGTCCTCTTAAGAGAAAAGGGGAAATGGAGAT
AGAAAGCCAGCCTAAGAGACCGTTCCAAGGAGCAACCAACATGCTGTCTACAGATGCTACACAA
TTGTCTGATTTCAGTTCATGGTGGTGTTATCAAGGAGAAGAAATTCCTGCCTTGACCAGATGTG
TGGAGCATCTACAAATGAACGAATAGTTATTTACACAAAGCACTGTACAAAAGCAAGCGTCCAT
GAAGCTGTCAGTGTCTTGGGTAGTATTATGAGGCCTTAGGTGCCTTGGGGTACGTTGCCGTCAT
GTAGGGGACATGTGTCGTAGGGTCTTGTGGAAATGGAAGCTTTCTGTATGTGGCTGCTATTCTG
TTTGCTTTGTTCCCGATTCCTTATTGTCCTTGCGTTTGTTCTGTCATGTGGTGACCTGGTGTTC
TGGTTTTGTATTGTGCTAGAGTCAGAACCCTCTTCTTGTCCTCGTTGCCCTATAGAGGTCAGTT
CGATATCTCTAAGGAAGCTTTGAGGAGCTGAAAAGGTCAGTGTGCTCCTGTGCCCTCTGCTTCC
AGAAGTTTTGTTGAGCTCTAAGCAGTGTATATGCAGTGTGACGTAACATATACTCTGTCATTTT
TACAAGAGAAAACTCCTGACTAAAATATTTAAGAAATCCAAGTGTGATCTATTGTGGCATTATT
TATTATGTATTACACTAGAAATAGTGTAATAGTGTAATAGTACAATGTTTATGTTGTTAGATTT
CTTTTAATGTTCAACCTGGTGGGTGGACTATTTGTTTAATTTACCCATTAGAATCGTGATATTA
AGTGAATGTAAGAAACAAACAGAAATTGTTAAACCTAAGTCTTTTGAAGTCTAAAATCGTTGGA
GGTGGTTTGATGGTATTTACAGACTAGAAATTCGTGTGCTTGAAGCAAAACCTCTATTCTAATT
ATCACAGAACATCACTTAGCTTGCTGCAGCTCCATTATAGAATCGGGTTTGTTCTTCTGTTTAC
ATTGTAATCACTGTCATAACAGCTATTACTGGCTTGAGTTCCCATGTTACTTTAGCCTGTGAAA
AGCTCAGAATCCTCCAAACCTAACATAAACGTGCTGTTATAAGAATCACTCACTTGTGTGCTAT
TTTAAAGAACCGTCTCTTTGATAGCACTGGTGTATCCACTCTGTTAATGAACCATATTGAAAGG
CTTTTGCCTTCATAATGATAAGAGATGAGTTTTTCTTTCAGGAGATTTGTCTGCCTTCACTCTT
CTTCTGTTTTATTTGACTTAAAGGGACACTTTGCAGTTCAAATTTAGAGTCCAAATTTAGGCCT
GTTAAGAAATAATCGTTGAAATGTGATGCTATCTGAAGGTGTGTTTAAAATTCGATGGTAAAAG
CAGGAGATTGAAATCGTCCCAATGGTGTGGTGAGGCGAAAGAGGCAGAAGGATTCAGTTTACTG
TTTTAGACCAACTCCTTTACTAATGATTCTAACTGAGTGTTTTAAATTCATTCTTTGCCATAAG
CGTATCCAGTTCATTCTGATCACTCTTGCTCCCTACCCTCCCTCATCTCTCTCCTACTCATCAG
TCACCACTTCTTTCTACAGATTCCTTTGCCACACTCTTGTTTTTTCCTTTGTGAACTAACCTTT
TGTTATTGTTGTCTTCTATTGTTTAAATGGACTAGAAAGCTAAATTTGTGCAGGGATTGTTTTG
AAACAAATAAAAATGGTAATATGCTAATCCACAGAGCAGCTTTGTTGACAGTACCCCTTTATTT
TTATATAAAGTCTAATATTTGAAATGTAGTTATTGTTACAAAGTAAAATTCTTTCTTCCTATTC
TCATATTATATCATATATTTTAAGGTTCTATTTGAAAACTACTACAAAAATGAAACCATAATAA
AATCCTATAGATACTGGTTTTGCTTGAATGACTTATAAATCACTGTTTTATGATAACTGCTTTT
GGAATAATAGAAAGTTTTGTGAAATGTTGACCTAGTGTATATCCTGAGATTGTGAATTTAATAA
AGTATATATACGTGTATAAAAAGATGGAA

hide sequence

RefSeq Acc Id:

XM_008773633 ⟹ XP_008771855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	137,908,658 - 137,935,147 (-)	NCBI
mRatBN7.2	X	132,989,124 - 133,015,622 (-)	NCBI
Rnor_6.0	X	157,853,453 - 157,879,934 (+)	NCBI

Sequence:

show sequence

TGAGCGACAAGATGCGGAAGAGCTGGCCCCTCGGAGGCTCCCATTTCTGAAGCGTGGGAGGCAA
AAAGAGGCGGCAGGTTATAGAAATCAGTTTGAGCTCCAGAGGGTCCCACGGGTCATTAGAGCCA
ATAAGAGAGAGAAGCAGAGCCTCGGTGGCGCAGAGGGCCTATCCCTCTTCTAATTCCTGAAGGC
GGGCAGGGACCAGGGAGTGAAAAGCGCCATCCCTGCGCTGAGGGGCCCCGGGGACCGGGGCCCA
GAGCATGGCGGACTGGACAGAGACCCTGAGCATGTGGAGGTGGAGCAGCCGAGGCCGCCTGGCC
AGCTGTCAAGTCCTCGTTGCTAGCGCTGCAAAGGCAGCGACTGTAAATGTAGCCGAGCCGCGCT
TGCGGTCCTAGGCGGGAAAAATGACAGCATGAGTTCTGCTGCTACCTAGTTTCCTCCTCTTTCT
TTTTTTTCTGTGCTTTCCTCTCCACATTCCCCTTCCTCTTCCTTTTCCCATCCCTGTGCCCCTT
TACCCTGACCCTTGTCCTCCTTTCCCACTTTTATCCTCTTCCATTATGCCCTGCATTTCCAGTT
ATCCTTTATCAACCCCTGTGCCTCTTTTTCCTTCTCCCACCTTTGTCTCTCCTCCCTCCTCTTT
TTCATCCTGTCACCCTCGCAACACCAGCTCTACATCCTCCTCCGCCCGCCCCCCACATCCTTCC
TCATCTGCATCCTCCTCTCCTACTTTTCTCCGCCCTCGCGCCCAAGCCTCCGCCCATTAGCCCC
CGCCCCCAGCTGCCAGTCCCCAGCAGCTCAGTCCTGCAGTGAGTCCATAGCAAAGCACCAGGAG
CTGAGAGCACTGCCGGCTGTGCTGGCTAGCAAGTCTCCGAATGGCTCAGGAGAAAATGGAGCTG
GATTTTGAGGCTGACACATCTGAGGGGGGCACCCTGAGACGGTCCAACAGTGCTCCCCTGATCC
ATGTGCTCAGTGACCTTTCCCAGGTTTTTGAGCCATATCCACTTAGAACTGGGAGGAACAGTGC
GACAGTTATGAGCCATCATAGCTTGGAAGAAGGCCTGGATTTGATGAACAGAGAAACTGCAAAT
GAAAGAGAACCACAAGGAGGAATGCAGATAAGCCACTCATGGGACGAAAGCTTAAGCCTGAGCG
ATAGTGATTTTGACAAGCCAGAGAAATTATATTCTCCAAAGAGAATTGACTTCACTCCAGTTTC
TCCAGCGCCTTCCCCAACCAGAGGATTTGGAAAGTGCACATCGCCATCCTTGCAAATGTTTGTG
GGCAGCAGTGAGGTGCCACCAAGTTCTGTTCCTAATCCAAGACATTTTTCAAGCAGGAGGAGTC
AGAGCCCAGTCAAGTGCATTAGGCCCAGCGTTCTTGGTCCTCTTAAGAGAAAAGGGGAAATGGA
GATAGAAAGCCAGCCTAAGAGACCGTTCCAAGGAGCAACCAACATGCTGTCTACAGATGCTACA
CAATTGTCTGATTTCAGTTCATGGTGGTGTTATCAAGGAGAAGAAATTCCTGCCTTGACCAGAT
GTGTGGAGCATCTACAAATGAACGAATAGTTATTTACACAAAGCACTGTACAAAAGCAAGCGTC
CATGAAGCTGTCAGTGTCTTGGGTAGTATTATGAGGCCTTAGGTGCCTTGGGGTACGTTGCCGT
CATGTAGGGGACATGTGTCGTAGGGTCTTGTGGAAATGGAAGCTTTCTGTATGTGGCTGCTATT
CTGTTTGCTTTGTTCCCGATTCCTTATTGTCCTTGCGTTTGTTCTGTCATGTGGTGACCTGGTG
TTCTGGTTTTGTATTGTGCTAGAGTCAGAACCCTCTTCTTGTCCTCGTTGCCCTATAGAGGTCA
GTTCGATATCTCTAAGGAAGCTTTGAGGAGCTGAAAAGGTCAGTGTGCTCCTGTGCCCTCTGCT
TCCAGAAGTTTTGTTGAGCTCTAAGCAGTGTATATGCAGTGTGACGTAACATATACTCTGTCAT
TTTTACAAGAGAAAACTCCTGACTAAAATATTTAAGAAATCCAAGTGTGATCTATTGTGGCATT
ATTTATTATGTATTACACTAGAAATAGTGTAATAGTGTAATAGTACAATGTTTATGTTGTTAGA
TTTCTTTTAATGTTCAACCTGGTGGGTGGACTATTTGTTTAATTTACCCATTAGAATCGTGATA
TTAAGTGAATGTAAGAAACAAACAGAAATTGTTAAACCTAAGTCTTTTGAAGTCTAAAATCGTT
GGAGGTGGTTTGATGGTATTTACAGACTAGAAATTCGTGTGCTTGAAGCAAAACCTCTATTCTA
ATTATCACAGAACATCACTTAGCTTGCTGCAGCTCCATTATAGAATCGGGTTTGTTCTTCTGTT
TACATTGTAATCACTGTCATAACAGCTATTACTGGCTTGAGTTCCCATGTTACTTTAGCCTGTG
AAAAGCTCAGAATCCTCCAAACCTAACATAAACGTGCTGTTATAAGAATCACTCACTTGTGTGC
TATTTTAAAGAACCGTCTCTTTGATAGCACTGGTGTATCCACTCTGTTAATGAACCATATTGAA
AGGCTTTTGCCTTCATAATGATAAGAGATGAGTTTTTCTTTCAGGAGATTTGTCTGCCTTCACT
CTTCTTCTGTTTTATTTGACTTAAAGGGACACTTTGCAGTTCAAATTTAGAGTCCAAATTTAGG
CCTGTTAAGAAATAATCGTTGAAATGTGATGCTATCTGAAGGTGTGTTTAAAATTCGATGGTAA
AAGCAGGAGATTGAAATCGTCCCAATGGTGTGGTGAGGCGAAAGAGGCAGAAGGATTCAGTTTA
CTGTTTTAGACCAACTCCTTTACTAATGATTCTAACTGAGTGTTTTAAATTCATTCTTTGCCAT
AAGCGTATCCAGTTCATTCTGATCACTCTTGCTCCCTACCCTCCCTCATCTCTCTCCTACTCAT
CAGTCACCACTTCTTTCTACAGATTCCTTTGCCACACTCTTGTTTTTTCCTTTGTGAACTAACC
TTTTGTTATTGTTGTCTTCTATTGTTTAAATGGACTAGAAAGCTAAATTTGTGCAGGGATTGTT
TTGAAACAAATAAAAATGGTAATATGCTAATCCACAGAGCAGCTTTGTTGACAGTACCCCTTTA
TTTTTATATAAAGTCTAATATTTGAAATGTAGTTATTGTTACAAAGTAAAATTCTTTCTTCCTA
TTCTCATATTATATCATATATTTTAAGGTTCTATTTGAAAACTACTACAAAAATGAAACCATAA
TAAAATCCTATAGATACTGGTTTTGCTTGAATGACTTATAAATCACTGTTTTATGATAACTGCT
TTTGGAATAATAGAAAGTTTTGTGAAATGTTGACCTAGTGTATATCCTGAGATTGTGAATTTAA
TAAAGTATATATACGTGTATAAAAAGATGGAA

hide sequence

RefSeq Acc Id:

XM_039099984 ⟹ XP_038955912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	137,908,658 - 137,935,153 (-)	NCBI
mRatBN7.2	X	132,990,915 - 133,015,625 (-)	NCBI

RefSeq Acc Id:

XM_039099985 ⟹ XP_038955913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	137,908,658 - 137,935,152 (-)	NCBI
mRatBN7.2	X	132,990,915 - 133,015,625 (-)	NCBI

RefSeq Acc Id:

XM_039099986 ⟹ XP_038955914

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	137,908,658 - 137,935,151 (-)	NCBI
mRatBN7.2	X	132,989,124 - 133,015,624 (-)	NCBI

RefSeq Acc Id:

XM_039099987 ⟹ XP_038955915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	137,908,658 - 137,935,151 (-)	NCBI
mRatBN7.2	X	132,989,124 - 133,015,624 (-)	NCBI

RefSeq Acc Id:

XM_039099988 ⟹ XP_038955916

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	137,911,368 - 137,935,153 (-)	NCBI
mRatBN7.2	X	132,991,839 - 133,015,625 (-)	NCBI

RefSeq Acc Id:

XM_039099989 ⟹ XP_038955917

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	137,908,658 - 137,935,153 (-)	NCBI
mRatBN7.2	X	132,990,919 - 133,015,625 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001160058	(Get FASTA)	NCBI Sequence Viewer
	XP_006257705	(Get FASTA)	NCBI Sequence Viewer
	XP_006257710	(Get FASTA)	NCBI Sequence Viewer
	XP_008771855	(Get FASTA)	NCBI Sequence Viewer
	XP_038955912	(Get FASTA)	NCBI Sequence Viewer
	XP_038955913	(Get FASTA)	NCBI Sequence Viewer
	XP_038955914	(Get FASTA)	NCBI Sequence Viewer
	XP_038955915	(Get FASTA)	NCBI Sequence Viewer
	XP_038955916	(Get FASTA)	NCBI Sequence Viewer
	XP_038955917	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL84483	(Get FASTA)	NCBI Sequence Viewer
	EDL84484	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060417
	ENSRNOP00000060417.4
	ENSRNOP00000069628
	ENSRNOP00000069628.2

RefSeq Acc Id:

NP_001160058 ⟸ NM_001166586

- UniProtKB:

A0A0G2JVV0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAQEKMELDFEADTSEGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTGRNSATVMSHHSLEEGLD
LMNRETANEREPQGGMQISHSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKCT
SPSLQMFVGSSEVPPSSVPNPRHFSRRSQSPVKCIRPSVLGPLKRKGEMEIESQPKRPFQGATN
MLSTDATQLSDFSSCSDILDGSSVSSGLSSDSLATGSAPAESPVACSNPCSSFILMDDLSPK

hide sequence

RefSeq Acc Id:	XP_006257710 ⟸ XM_006257648
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2QBZ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQEKMELDFEADTSEGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTGRNSATVMSHHSLEEGLD LMNRETANEREPQGGMQISHSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKCT SPSLQMFVGSSEVPPSSVPNPRHFSRRSQSPVKCIRPSVLGPLKRKGEMEIESQPKRPFQGATN MLSTDATQLSDFSSWWCYQGEEIPALTRCVEHLQMNE hide sequence

RefSeq Acc Id:	XP_006257705 ⟸ XM_006257643
- Peptide Label:	isoform X3
- UniProtKB:	A6KUJ4 (UniProtKB/TrEMBL), A0A0G2JVV0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQEKMELDFEADTSEGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTGRNSATVMSHHSLEEGLD LMNRETANEREPQGGMQISHSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKCT SPSLQMFVGSSEVPPSSVPNPRHFSSRRSQSPVKCIRPSVLGPLKRKGEMEIESQPKRPFQGAT NMLSTDATQLSDFSSCSDILDGSSVSSGLSSDSLATGSAPAESPVACSNPCSSFILMDDLSPK hide sequence

RefSeq Acc Id:	XP_008771855 ⟸ XM_008773633
- Peptide Label:	isoform X6
- UniProtKB:	A0A0G2QBZ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQEKMELDFEADTSEGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTGRNSATVMSHHSLEEGLD LMNRETANEREPQGGMQISHSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKCT SPSLQMFVGSSEVPPSSVPNPRHFSSRRSQSPVKCIRPSVLGPLKRKGEMEIESQPKRPFQGAT NMLSTDATQLSDFSSWWCYQGEEIPALTRCVEHLQMNE hide sequence

RefSeq Acc Id:	XP_038955915 ⟸ XM_039099987
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2QBZ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955914 ⟸ XM_039099986
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2QBZ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955913 ⟸ XM_039099985
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JVV0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955912 ⟸ XM_039099984
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JVV0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955917 ⟸ XM_039099989
- Peptide Label:	isoform X8
- UniProtKB:	A0A0G2QBZ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955916 ⟸ XM_039099988
- Peptide Label:	isoform X8
- UniProtKB:	A0A0G2QBZ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000060417 ⟸ ENSRNOT00000066874

RefSeq Acc Id:

ENSRNOP00000069628 ⟸ ENSRNOT00000089777

RefSeq Acc Id:

ENSRNOP00000070925 ⟸ ENSRNOT00000080538

RefSeq Acc Id:

ENSRNOP00000003145 ⟸ ENSRNOT00000003145

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZN42-F1-model_v2	AlphaFold	D3ZN42	1-254	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560129	AgrOrtholog
BioCyc Gene	G2FUF-978	BioCyc
Ensembl Genes	ENSRNOG00000002285	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000050146	Ensembl
Ensembl Transcript	ENSRNOT00000066874.4	UniProtKB/TrEMBL
	ENSRNOT00000089777	ENTREZGENE
	ENSRNOT00000089777.2	UniProtKB/TrEMBL
InterPro	FAM122	UniProtKB/TrEMBL
NCBI Gene	501647	ENTREZGENE
PANTHER	PABIR FAMILY MEMBER 2	UniProtKB/TrEMBL
	PTHR22227	UniProtKB/TrEMBL
PhenoGen	Pabir2	PhenoGen
RatGTEx	ENSRNOG00000002285	RatGTEx
	ENSRNOG00000050146	RatGTEx
UniProt	A0A0G2JVV0	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2QBZ6	ENTREZGENE, UniProtKB/TrEMBL
	A6KUJ4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Pabir2	PABIR family member 2	LOC100909732	protein FAM122B-like	Data merged from RGD:6501955	737654	PROVISIONAL
2020-10-27	Pabir2	PABIR family member 2	Fam122b	family with sequence similarity 122B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100909732	protein FAM122B-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-07	Fam122b	family with sequence similarity 122B	RGD1560129_predicted	similar to RIKEN cDNA 4632404H22 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560129_predicted	similar to RIKEN cDNA 4632404H22 (predicted)	LOC501647	similar to RIKEN cDNA 4632404H22	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC501647	similar to RIKEN cDNA 4632404H22			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar