ACI/Eur (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
ACI/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN-Lx (ICL)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Imperial College London (Dr Timothy Aitman) |
| Platform: |
SOLID |
| Secondary Analysis: |
BWA, GATK, Samtools |
| Breeder: |
Academy of Sciences of the Czech Republic (Dr.Michal Pravenec) |
| Grant Information: |
MC-A654-5QB00 |
|
|
BN-Lx (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Academy of Sciences of the Czech Republic (Dr.Michal Pravenec) |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN/NHsdMcwi (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN/SsN (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
Buf/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
COP/Crl (MCW & UW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob)
Univiersity of Wisconsin (Jim Shull) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v2.3-5 |
| Breeder: |
Charles River |
| Grant Information: |
NIH (CA77876) |
|
|
F344/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
FHH/EurMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
FHH/EurMcwi (MDC)
|
|
| Sequenced By: |
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
FHL/EurMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
GH/OmrMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v2.3-5 |
|
|
LE/Stm (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Dr. Tadao Serikawa, Kyoto Japan. |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
M520/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
MR/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SHR/Olalpcv (ICL)
|
|
| Sequenced By: |
Imperial College London (Dr Timothy Aitman)
University of British Columbia (Dr. Steven Jones) |
| Platform: |
Illumina Hi-seq 2000 and GAII |
| Secondary Analysis: |
BWA, GATK |
| Breeder: |
Institute of Physiology, Academy of Sciences of the Czech Republic, Prague |
| Grant Information: |
LSHG-CT-2005-019015, HEALTH-F4-2010-241504 |
|
|
SHR/Olalpcv (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Imperial College London (Dr Timothy Aitman) |
| Platform: |
Illumina |
| Secondary Analysis: |
GATK |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SHRSP/Gcrc (MDC)
|
|
| Sequenced By: |
Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
University of Glasgow, Anna Dominiczak |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SR/JrHsd (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
| Breeder: |
Harlan |
|
|
SS/JrHsdMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
| Grant Information: |
R01 HL089930 |
|
|
SS/JrHsdMcwi (MDC)
|
|
| Sequenced By: |
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
WKY/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
WN/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
QTLs in Region (RGSC Genome Assembly v3.4)
