Jpt2l1 (Jupiter microtubule associated homolog 2 like 1) - Rat Genome Database

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Gene: Jpt2l1 (Jupiter microtubule associated homolog 2 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Jpt2l1 (Ensembl: RGD1559903)
Name: Jupiter microtubule associated homolog 2 like 1 (Ensembl:similar to RIKEN cDNA 1700049L16)
RGD ID: 1559903
Description: Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human JPT2 (Jupiter microtubule associated homolog 2).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC502418; Jupiter microtubule associated homolog 2-like; LOC502418; RGD1559903; similar to RIKEN cDNA 1700049L16; uncharacterized protein LOC502418
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82016,624,551 - 16,625,348 (+)NCBIGRCr8
mRatBN7.22016,625,354 - 16,626,151 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2016,625,318 - 16,626,364 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2017,338,847 - 17,339,644 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02016,693,860 - 16,694,657 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02017,166,475 - 17,167,272 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02017,750,744 - 17,751,541 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2017,750,744 - 17,751,541 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02019,931,569 - 19,932,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42017,281,051 - 17,281,848 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2018,034,936 - 18,035,733 (+)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Jpt2l1
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:37
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000000745
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20669170617489458Rat
1581577Pur15Proteinuria QTL 154.380.0002urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804241017617956Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat

Markers in Region
BF406112  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22016,625,793 - 16,625,966 (+)MAPPERmRatBN7.2
Rnor_6.02017,751,184 - 17,751,356NCBIRnor6.0
Rnor_5.02019,932,009 - 19,932,181UniSTSRnor5.0
RGSC_v3.42017,281,491 - 17,281,663UniSTSRGSC3.4
Celera2018,035,376 - 18,035,548UniSTS
RH 3.4 Map20210.27UniSTS
Cytogenetic Map20p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 1 1
Below cutoff 2 10 4 7 4 2 2 4 2 3 3 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000000745   ⟹   ENSRNOP00000000745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2016,625,318 - 16,626,364 (+)Ensembl
Rnor_6.0 Ensembl2017,750,744 - 17,751,541 (+)Ensembl
RefSeq Acc Id: NM_001109337   ⟹   NP_001102807
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82016,624,551 - 16,625,348 (+)NCBI
mRatBN7.22016,625,354 - 16,626,151 (+)NCBI
Rnor_6.02017,750,744 - 17,751,541 (+)NCBI
Rnor_5.02019,931,569 - 19,932,366 (+)NCBI
RGSC_v3.42017,281,051 - 17,281,848 (+)RGD
Celera2018,034,936 - 18,035,733 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102807 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL97246 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000745
  ENSRNOP00000000745.2
Reference Protein Sequences
RefSeq Acc Id: NP_001102807   ⟸   NM_001109337
- UniProtKB: D3ZDL0 (UniProtKB/TrEMBL),   A6JKN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000000745   ⟸   ENSRNOT00000000745

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZDL0-F1-model_v2 AlphaFold D3ZDL0 1-175 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701548
Promoter ID:EPDNEW_R12072
Type:multiple initiation site
Name:RGD1559903_1
Description:similar to RIKEN cDNA 1700049L16
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02017,750,733 - 17,750,793EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559903 AgrOrtholog
BioCyc Gene G2FUF-4071 BioCyc
Ensembl Genes ENSRNOG00000000607 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000745 ENTREZGENE
  ENSRNOT00000000745.4 UniProtKB/TrEMBL
InterPro JUPITER/HN1/HN1L UniProtKB/TrEMBL
KEGG Report rno:502418 UniProtKB/TrEMBL
NCBI Gene 502418 ENTREZGENE
PANTHER JUPITER MICROTUBULE ASSOCIATED HOMOLOG 2 UniProtKB/TrEMBL
  PTHR34930 UniProtKB/TrEMBL
PhenoGen Jpt2l1 PhenoGen
RatGTEx ENSRNOG00000000607 RatGTEx
UniProt A6JKN0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZDL0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Jpt2l1  Jupiter microtubule associated homolog 2 like 1  RGD1559903  similar to RIKEN cDNA 1700049L16  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1559903  similar to RIKEN cDNA 1700049L16   RGD1559903_predicted  similar to RIKEN cDNA 1700049L16 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559903_predicted  similar to RIKEN cDNA 1700049L16 (predicted)  LOC502418  similar to RIKEN cDNA 1700049L16  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502418  similar to RIKEN cDNA 1700049L16      Symbol and Name status set to provisional 70820 PROVISIONAL