Rps26-ps12 (ribosomal protein S26, pseudogene 12) - Rat Genome Database

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Gene: Rps26-ps12 (ribosomal protein S26, pseudogene 12) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps26-ps12 (Ensembl: RGD1559808)
Name: ribosomal protein S26, pseudogene 12 (Ensembl:similar to 40S ribosomal protein S26)
RGD ID: 1559808
Description: Predicted to be involved in translation; INTERACTS WITH indole-3-methanol.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S26-like; LOC316158; RGD1559808; ribosomal protein S26 like 1; ribosomal protein S26 like 3; Rps26l1; Rps26l3; similar to 40S ribosomal protein S26; small ribosomal subunit protein eS26-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr896,254,832 - 6,256,111 (-)NCBIGRCr8
mRatBN7.296,019,031 - 6,020,447 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl652,996,214 - 52,996,878 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.093,238,038 - 3,238,497 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl93,238,077 - 3,238,424 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0937,318,209 - 37,318,632 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.492,011,520 - 2,011,867 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps26-ps12
18 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1
Low 10 14 14 14 2 16 1 15 2
Below cutoff 1 21 19 14 6 14 26 19 19 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063267794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000088083   ⟹   ENSRNOP00000073505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl652,996,214 - 52,996,878 (-)Ensembl
Rnor_6.0 Ensembl93,238,077 - 3,238,424 (+)Ensembl
RefSeq Acc Id: XM_063267794   ⟹   XP_063123864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,254,832 - 6,256,111 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063123864 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073505.2
RefSeq Acc Id: ENSRNOP00000073505   ⟸   ENSRNOT00000088083
RefSeq Acc Id: XP_063123864   ⟸   XM_063267794

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K5P4-F1-model_v2 AlphaFold A0A0G2K5P4 1-115 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696423
Promoter ID:EPDNEW_R6945
Type:single initiation site
Name:RGD1559808_1
Description:similar to 40S ribosomal protein S26
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.093,238,060 - 3,238,120EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559808 AgrOrtholog
BioCyc Gene G2FUF-28407 BioCyc
Ensembl Genes ENSRNOG00000051710 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000088083.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1740.20 UniProtKB/TrEMBL
InterPro Ribosomal_eS26_CS UniProtKB/TrEMBL
  Ribosomal_S26e UniProtKB/TrEMBL
  Ribosomal_S26e_sf UniProtKB/TrEMBL
NCBI Gene 316158 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S26 UniProtKB/TrEMBL
  PTHR12538 UniProtKB/TrEMBL
Pfam Ribosomal_S26e UniProtKB/TrEMBL
PhenoGen Rps26-ps12 PhenoGen
PROSITE RIBOSOMAL_S26E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000051710 RatGTEx
UniProt A0A0G2K5P4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-28 Rps26-ps12  ribosomal protein S26, pseudogene 12  Rps26l3  ribosomal protein S26 like 3  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2023-10-19 Rps26l3  ribosomal protein S26 like 3  Rps26l1  ribosomal protein S26 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rps26l1  ribosomal protein S26 like 1  RGD1559808  similar to 40S ribosomal protein S26  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1559808  similar to 40S ribosomal protein S26   RGD1559808_predicted  similar to 40S ribosomal protein S26 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559808_predicted  similar to 40S ribosomal protein S26 (predicted)  LOC316158  similar to 40S ribosomal protein S26  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC316158  similar to 40S ribosomal protein S26      Symbol and Name status set to provisional 70820 PROVISIONAL