Gdf3 (growth differentiation factor 3) - Rat Genome Database

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Gene: Gdf3 (growth differentiation factor 3) Mus musculus
Analyze
Symbol: Gdf3
Name: growth differentiation factor 3
RGD ID: 1557417
MGI Page MGI
Description: Predicted to enable cytokine activity and protein kinase binding activity. Involved in positive regulation of fat cell differentiation. Acts upstream of or within several processes, including anterior/posterior axis specification; negative regulation of myoblast differentiation; and response to dietary excess. Predicted to be located in cytoplasm. Predicted to be active in extracellular space. Is expressed in several structures, including epiblast; genitourinary system; gut; hemolymphoid system gland; and skeleton. Human ortholog(s) of this gene implicated in Klippel-Feil syndrome 3 and isolated microphthalmia 7. Orthologous to human GDF3 (growth differentiation factor 3).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: C78318; ecat; ecat9; Gdf-3; growth/differentiation factor 3; MGC123990; MGC123991; Vg; VG-1-related protein 2; Vgr; Vgr-2; Vgr2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,582,362 - 122,587,046 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6122,582,362 - 122,587,046 (-)EnsemblGRCm39 Ensembl
GRCm386122,605,403 - 122,610,087 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,605,403 - 122,610,087 (-)EnsemblGRCm38mm10GRCm38
MGSCv376122,555,421 - 122,560,089 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366122,571,022 - 122,575,690 (-)NCBIMGSCv36mm8
Celera6124,400,537 - 124,405,205 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1480182   PMID:8429021   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11518254   PMID:12477932   PMID:12787504   PMID:12904583   PMID:14610273  
PMID:15342483   PMID:15358131   PMID:15619674   PMID:16141072   PMID:16141073   PMID:16339188   PMID:16368929   PMID:16580991   PMID:16602821   PMID:17936261   PMID:18287559   PMID:18480259  
PMID:18799693   PMID:19008465   PMID:20359476   PMID:20950440   PMID:21047506   PMID:21267068   PMID:21589869   PMID:21731673   PMID:21873635   PMID:22223106   PMID:22560297   PMID:23473982  
PMID:23844157   PMID:24859004   PMID:24952961   PMID:27836432   PMID:28953873   PMID:29945891   PMID:30842446   PMID:31947892   PMID:33830083   PMID:35729116   PMID:36484260  


Genomics

Comparative Map Data
Gdf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,582,362 - 122,587,046 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6122,582,362 - 122,587,046 (-)EnsemblGRCm39 Ensembl
GRCm386122,605,403 - 122,610,087 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,605,403 - 122,610,087 (-)EnsemblGRCm38mm10GRCm38
MGSCv376122,555,421 - 122,560,089 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366122,571,022 - 122,575,690 (-)NCBIMGSCv36mm8
Celera6124,400,537 - 124,405,205 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.7NCBI
GDF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,689,784 - 7,695,775 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,689,784 - 7,695,775 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,842,380 - 7,848,371 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,733,648 - 7,739,627 (-)NCBINCBI36Build 36hg18NCBI36
Build 34127,733,647 - 7,739,627NCBI
Celera129,419,392 - 9,425,368 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef127,656,489 - 7,662,465 (-)NCBIHuRef
CHM1_1127,839,618 - 7,847,334 (-)NCBICHM1_1
T2T-CHM13v2.0127,704,552 - 7,710,540 (-)NCBIT2T-CHM13v2.0
Gdf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84157,503,547 - 157,507,923 (-)NCBIGRCr8
mRatBN7.24155,831,572 - 155,835,953 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4155,830,909 - 155,835,937 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4162,096,256 - 162,100,528 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04157,879,466 - 157,883,738 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04156,524,567 - 156,528,834 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04155,417,667 - 155,422,014 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4155,417,004 - 155,421,998 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04222,441,866 - 222,445,551 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,064,054 - 159,067,854 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4144,650,730 - 144,655,147 (-)NCBICelera
Cytogenetic Map4q42NCBI
Gdf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554136,493,734 - 6,516,315 (-)NCBIChiLan1.0ChiLan1.0
GDF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21013,248,001 - 13,262,305 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11213,244,760 - 13,259,063 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,813,288 - 7,819,418 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,972,941 - 7,979,654 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,972,907 - 7,979,815 (-)Ensemblpanpan1.1panPan2
GDF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,125,845 - 37,129,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,125,928 - 37,129,484 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,486,781 - 9,490,505 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02737,475,220 - 37,478,894 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2737,475,303 - 37,478,814 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12737,356,251 - 37,359,922 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02737,391,174 - 37,394,862 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,972,861 - 8,976,557 (+)NCBIUU_Cfam_GSD_1.0
Gdf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494598,790,269 - 98,799,229 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049378477,456 - 16,783 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049378478,179 - 16,783 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GDF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl562,835,880 - 62,841,884 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1562,835,926 - 62,841,827 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,666,056 - 65,672,100 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GDF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,727,818 - 7,733,514 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,727,913 - 7,733,075 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666063470,438 - 475,790 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gdf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248604,968,624 - 4,970,362 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gdf3
194 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:247
Count of miRNA genes:199
Interacting mature miRNAs:218
Transcripts:ENSMUST00000032211
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115694477132578150Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116641858128495988Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
C78318  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386122,606,455 - 122,606,547UniSTSGRCm38
MGSCv376122,556,473 - 122,556,565UniSTSGRCm37
Celera6124,401,589 - 124,401,681UniSTS
Cytogenetic Map6F1UniSTS
cM Map660.6UniSTS
Whitehead/MRC_RH61233.54UniSTS
Gdf3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386122,606,601 - 122,606,702UniSTSGRCm38
MGSCv376122,556,619 - 122,556,720UniSTSGRCm37
Celera6124,401,735 - 124,401,836UniSTS
Cytogenetic Map6F1UniSTS
cM Map660.6UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000032211   ⟹   ENSMUSP00000032211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6122,582,362 - 122,587,046 (-)Ensembl
GRCm38.p6 Ensembl6122,605,403 - 122,610,087 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6122,584,986 - 122,586,783 (-)Ensembl
GRCm38.p6 Ensembl6122,608,027 - 122,609,824 (-)Ensembl
RefSeq Acc Id: NM_008108   ⟹   NP_032134
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396122,582,362 - 122,587,046 (-)NCBI
GRCm386122,605,403 - 122,610,087 (-)NCBI
MGSCv376122,555,421 - 122,560,089 (-)RGD
Celera6124,400,537 - 124,405,205 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505540   ⟹   XP_006505603
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396122,583,195 - 122,586,618 (-)NCBI
GRCm386122,606,236 - 122,609,659 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_032134   ⟸   NM_008108
- Peptide Label: preproprotein
- UniProtKB: Q3TUX1 (UniProtKB/Swiss-Prot),   Q07104 (UniProtKB/Swiss-Prot),   Q3ZB19 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505603   ⟸   XM_006505540
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000032211   ⟸   ENSMUST00000032211
Protein Domains
TGF-beta family profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q07104-F1-model_v2 AlphaFold Q07104 1-366 view protein structure

Promoters
RGD ID:6839337
Promoter ID:MM_KWN:47483
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000050988
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366122,559,411 - 122,559,911 (-)MPROMDB
RGD ID:6890914
Promoter ID:EPDNEW_M8908
Type:initiation region
Name:Gdf3_1
Description:Mus musculus growth differentiation factor 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386122,609,974 - 122,610,034EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95686 AgrOrtholog
Ensembl Genes ENSMUSG00000030117 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000032211 ENTREZGENE
  ENSMUST00000032211.5 UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.120.970 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGF-b_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGF-b_propeptide UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGF-beta-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGFb_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14562 UniProtKB/Swiss-Prot
MGD MGI:95686 ENTREZGENE
NCBI Gene 14562 ENTREZGENE
PANTHER GROWTH/DIFFERENTIATION FACTOR 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11848 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TGF_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGFb_propeptide UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gdf3 PhenoGen
PRINTS INHIBINA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TGF_BETA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGF_BETA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TGFB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt GDF3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TUX1 ENTREZGENE
  Q3ZB19 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q3TUX1 UniProtKB/Swiss-Prot