Trpa1 (transient receptor potential cation channel, subfamily A, member 1) - Rat Genome Database

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Gene: Trpa1 (transient receptor potential cation channel, subfamily A, member 1) Mus musculus
Analyze
Symbol: Trpa1
Name: transient receptor potential cation channel, subfamily A, member 1
RGD ID: 1553598
MGI Page MGI
Description: Enables calcium channel activity. Involved in several processes, including cell surface receptor signaling pathway; detection of mechanical stimulus involved in sensory perception; and intracellular calcium ion homeostasis. Acts upstream of or within several processes, including detection of stimulus involved in sensory perception of pain; response to hydrogen peroxide; and thermoception. Located in stereocilium bundle. Is expressed in cochlea; dorsal root ganglion; glossopharyngeal ganglion; and lumbar dorsal root ganglion. Human ortholog(s) of this gene implicated in familial episodic pain syndrome 1. Orthologous to human TRPA1 (transient receptor potential cation channel subfamily A member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ANKT; Anktm1; ankyrin-like with transmembrane domains protein 1; transient receptor potential cation channel subfamily A member 1; TRPA1b; wasabi receptor
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,942,868 - 14,989,086 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,942,872 - 14,989,086 (-)EnsemblGRCm39 Ensembl
GRCm38114,872,644 - 14,918,862 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,872,648 - 14,918,862 (-)EnsemblGRCm38mm10GRCm38
MGSCv37114,862,729 - 14,908,943 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,857,862 - 14,904,076 (-)NCBIMGSCv36mm8
Celera114,822,489 - 14,871,741 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dibutyrin  (ISO)
1,2-dichloroethane  (EXP)
1,2-naphthoquinone  (ISO)
1,4-dithiothreitol  (ISO)
1-naphthol  (ISO)
1-nitronaphthalene  (ISO)
1-Oleoyl-2-acetyl-sn-glycerol  (EXP)
2,3-Dicresol  (ISO)
2,4-di-tert-butylphenol  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-xylenol  (ISO)
2,5-xylenol  (ISO)
2,6-Dimethylphenol  (ISO)
2-ethylhexan-1-ol  (ISO)
2-Ethylphenol  (ISO)
2-Methoxy-4-methylphenol  (ISO)
3,4-xylenol  (ISO)
3,5-xylenol  (ISO)
3-Ethylphenol  (ISO)
3-phenylprop-2-enal  (EXP,ISO)
4-ethylphenol  (ISO)
4-hydroxynon-2-enal  (EXP,ISO)
8-Br-cAMP  (ISO)
acetophenone  (ISO)
aconitine  (ISO)
acrolein  (EXP,ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Agathic acid  (ISO)
allethrin  (ISO)
allicin  (EXP,ISO)
allyl isothiocyanate  (EXP,ISO)
amiloride  (EXP)
arachidonic acid  (EXP)
atenolol  (EXP)
atropine  (EXP)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
buta-1,3-diene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
Cannabichromene  (ISO)
cannabidiol  (ISO)
cannabidiolic acid  (ISO)
Cannabidivarin  (ISO)
Cannabinol  (ISO)
capsaicin  (ISO)
carbon dioxide  (ISO)
carvacrol  (ISO)
CGP 52608  (ISO)
cisplatin  (EXP)
citronellal  (ISO)
coniferyl aldehyde  (ISO)
crotonaldehyde  (EXP,ISO)
cyclophosphamide  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
deoxynivalenol  (EXP)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
edelfosine  (ISO)
entinostat  (ISO)
eugenol  (ISO)
fenvalerate  (ISO)
fluorescein 5-isothiocyanate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
gadolinium atom  (EXP)
gentamycin  (EXP)
glutathione  (ISO)
hydrogen sulfide  (EXP,ISO)
hydroquinone  (ISO)
indometacin  (EXP)
isocyanates  (EXP)
isopentenyl diphosphate  (EXP)
L-1,4-dithiothreitol  (ISO)
Lasiocarpine  (ISO)
lidocaine  (EXP,ISO)
linalool  (EXP)
lipopolysaccharide  (ISO)
mechlorethamine  (ISO)
menadione  (ISO)
methylglyoxal  (ISO)
N(gamma)-nitro-L-arginine methyl ester  (EXP)
N-acetyl-1,4-benzoquinone imine  (EXP,ISO)
N-acetyl-L-cysteine  (ISO)
naphthalene  (EXP)
nonivamide  (ISO)
ozone  (EXP,ISO)
p-menthan-3-ol  (ISO)
p-methoxybenzaldehyde  (ISO)
paracetamol  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
picrocrocin  (ISO)
pyrethrins  (ISO)
resiniferatoxin  (ISO)
ruthenium red  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
safranal  (EXP,ISO)
SB 431542  (ISO)
serotonin  (ISO)
styrene  (EXP)
tributyrin  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
tropan-3alpha-yl 3-hydroxy-2-phenylpropanoate  (EXP)
U-73122  (EXP)
valproic acid  (ISO)
WIN 55212-2  (EXP,ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. TRPA1 receptor modulation attenuates bladder overactivity induced by spinal cord injury. Andrade EL, etal., Am J Physiol Renal Physiol. 2011 May;300(5):F1223-34. doi: 10.1152/ajprenal.00535.2010. Epub 2011 Mar 2.
2. TRPA1 contributes to cold hypersensitivity. del Camino D, etal., J Neurosci. 2010 Nov 10;30(45):15165-74. doi: 10.1523/JNEUROSCI.2580-10.2010.
3. HC-030031, a TRPA1 selective antagonist, attenuates inflammatory- and neuropathy-induced mechanical hypersensitivity. Eid SR, etal., Mol Pain. 2008 Oct 27;4:48. doi: 10.1186/1744-8069-4-48.
4. Intact Adelta-fibers up-regulate transient receptor potential A1 and contribute to cold hypersensitivity in neuropathic rats. Ji G, etal., Neuroscience. 2008 Jun 26;154(3):1054-66. doi: 10.1016/j.neuroscience.2008.04.039. Epub 2008 May 2.
5. Inhibiting TRPA1 ion channel reduces loss of cutaneous nerve fiber function in diabetic animals: sustained activation of the TRPA1 channel contributes to the pathogenesis of peripheral diabetic neuropathy. Koivisto A, etal., Pharmacol Res. 2012 Jan;65(1):149-58. doi: 10.1016/j.phrs.2011.10.006. Epub 2011 Nov 23.
6. Effects of novel TRPA1 receptor agonist ASP7663 in models of drug-induced constipation and visceral pain. Kojima R, etal., Eur J Pharmacol. 2014 Jan 15;723:288-93. doi: 10.1016/j.ejphar.2013.11.020. Epub 2013 Nov 28.
7. MGDs mouse GO annotations MGD data from the GO Consortium
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Behavioral characterization of a CRISPR-generated TRPA1 knockout rat in models of pain, itch, and asthma. Reese RM, etal., Sci Rep. 2020 Jan 22;10(1):979. doi: 10.1038/s41598-020-57936-5.
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Role of TRPV1 and TRPA1 in visceral hypersensitivity to colorectal distension during experimental colitis in rats. Vermeulen W, etal., Eur J Pharmacol. 2013 Jan 5;698(1-3):404-12. doi: 10.1016/j.ejphar.2012.10.014. Epub 2012 Oct 23.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12654248   PMID:12815418   PMID:15046718   PMID:15194861   PMID:15483558   PMID:15843607  
PMID:16141072   PMID:16141073   PMID:16446141   PMID:16460286   PMID:16564016   PMID:16602821   PMID:16630838   PMID:16914684   PMID:16949152   PMID:17237762   PMID:17553423   PMID:17584831  
PMID:17588549   PMID:17942735   PMID:17970723   PMID:18234879   PMID:18272293   PMID:18297068   PMID:18364033   PMID:18398506   PMID:18495815   PMID:18498732   PMID:18498735   PMID:18499726  
PMID:18515013   PMID:18550530   PMID:18568022   PMID:18568077   PMID:18574153   PMID:18625802   PMID:18652806   PMID:18667618   PMID:18671867   PMID:18687886   PMID:18769139   PMID:18815250  
PMID:18988737   PMID:19033673   PMID:19036859   PMID:19059884   PMID:19065290   PMID:19144922   PMID:19211797   PMID:19279249   PMID:19322198   PMID:19369549   PMID:19383149   PMID:19419422  
PMID:19458046   PMID:19632231   PMID:19749751   PMID:19812688   PMID:19834762   PMID:19853036   PMID:19875705   PMID:19893614   PMID:19945392   PMID:20042899   PMID:20133428   PMID:20176620  
PMID:20442136   PMID:20519530   PMID:20539005   PMID:20826794   PMID:20881114   PMID:20884333   PMID:21076394   PMID:21112285   PMID:21185837   PMID:21205926   PMID:21212128   PMID:21267068  
PMID:21315593   PMID:21315802   PMID:21337373   PMID:21360511   PMID:21364461   PMID:21460831   PMID:21549810   PMID:21555074   PMID:21558163   PMID:21576376   PMID:21653898   PMID:21689654  
PMID:21763243   PMID:21763756   PMID:21868092   PMID:21873995   PMID:21879401   PMID:21908607   PMID:22109525   PMID:22133806   PMID:22158513   PMID:22207754   PMID:22300105   PMID:22300342  
PMID:22493235   PMID:22532928   PMID:22553041   PMID:22641084   PMID:22721614   PMID:22740698   PMID:22785020   PMID:22787056   PMID:22850668   PMID:22865090   PMID:22905134   PMID:22927999  
PMID:22935519   PMID:22971321   PMID:23071662   PMID:23133534   PMID:23262517   PMID:23271050   PMID:23448290   PMID:23477783   PMID:23497345   PMID:23508958   PMID:23558009   PMID:23671638  
PMID:23711479   PMID:23719797   PMID:23720338   PMID:23761909   PMID:23918657   PMID:24008932   PMID:24071625   PMID:24140646   PMID:24162021   PMID:24167592   PMID:24172941   PMID:24245768  
PMID:24357536   PMID:24442491   PMID:24445575   PMID:24516396   PMID:24671991   PMID:24698267   PMID:24704367   PMID:24743146   PMID:24780252   PMID:24812665   PMID:24814535   PMID:24846744  
PMID:24944203   PMID:25057188   PMID:25068659   PMID:25101983   PMID:25109670   PMID:25181545   PMID:25194674   PMID:25228635   PMID:25265225   PMID:25271163   PMID:25281928   PMID:25325736  
PMID:25355205   PMID:25369838   PMID:25484020   PMID:25501034   PMID:25564678   PMID:25605129   PMID:25640077   PMID:25658427   PMID:25733887   PMID:25765567   PMID:25787141   PMID:25830814  
PMID:25834056   PMID:25839032   PMID:25843641   PMID:25875358   PMID:25903127   PMID:25955385   PMID:26074006   PMID:26207981   PMID:26472811   PMID:26504357   PMID:26521042   PMID:26521748  
PMID:26746673   PMID:26754745   PMID:26760212   PMID:26763435   PMID:26922677   PMID:26963818   PMID:26978657   PMID:26984186   PMID:27121378   PMID:27126687   PMID:27144598   PMID:27170124  
PMID:27189253   PMID:27194300   PMID:27255083   PMID:27313495   PMID:27325418   PMID:27356469   PMID:27436359   PMID:27449282   PMID:27455110   PMID:27566399   PMID:27568827   PMID:27592100  
PMID:27628562   PMID:27735854   PMID:27746315   PMID:27758889   PMID:27799370   PMID:27823962   PMID:27840000   PMID:28039411   PMID:28130183   PMID:28176353   PMID:28303259   PMID:28396565  
PMID:28408328   PMID:28410268   PMID:28498403   PMID:28644897   PMID:28658621   PMID:28713241   PMID:28792844   PMID:28890086   PMID:28986540   PMID:28990934   PMID:29025860   PMID:29057902  
PMID:29081531   PMID:29084244   PMID:29094727   PMID:29117570   PMID:29128286   PMID:29138055   PMID:29141003   PMID:29192128   PMID:29192190   PMID:29249972   PMID:29270106   PMID:29282753  
PMID:29497363   PMID:29505031   PMID:29539642   PMID:29550417   PMID:29682158   PMID:29719223   PMID:29734380   PMID:29738273   PMID:29759134   PMID:29795268   PMID:29920354   PMID:29968518  
PMID:29976627   PMID:29985973   PMID:30033153   PMID:30037926   PMID:30082422   PMID:30104600   PMID:30148678   PMID:30181551   PMID:30239332   PMID:30240621   PMID:30289972   PMID:30353098  
PMID:30636360   PMID:30637823   PMID:30699406   PMID:30735434   PMID:30738091   PMID:30787340   PMID:30807826   PMID:30914247   PMID:30974795   PMID:30990108   PMID:31012378   PMID:31045572  
PMID:31111624   PMID:31161862   PMID:31184584   PMID:31197234   PMID:31279969   PMID:31281589   PMID:31285762   PMID:31333464   PMID:31339777   PMID:31447178   PMID:31487269   PMID:31488616  
PMID:31536477   PMID:31588000   PMID:31624176   PMID:31664854   PMID:31790822   PMID:31878344   PMID:31883821   PMID:31911949   PMID:31914619   PMID:32045597   PMID:32089077   PMID:32095993  
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PMID:32526913   PMID:32570040   PMID:32679097   PMID:32687056   PMID:32698003   PMID:32729832   PMID:32801314   PMID:32859683   PMID:32862473   PMID:32863706   PMID:32880221   PMID:32965166  
PMID:33010342   PMID:33035578   PMID:33067780   PMID:33097573   PMID:33192579   PMID:33220232   PMID:33281629   PMID:33317522   PMID:33374841   PMID:33379368   PMID:33450207   PMID:33635784  
PMID:33669091   PMID:33771873   PMID:33771895   PMID:33789102   PMID:33806000   PMID:33812858   PMID:33819369   PMID:33819485   PMID:33824316   PMID:33857021   PMID:33873095   PMID:33884443  
PMID:33902628   PMID:33976193   PMID:34116733   PMID:34143493   PMID:34338291   PMID:34439832   PMID:34473953   PMID:34569661   PMID:34639197   PMID:34690820   PMID:34711761   PMID:34768199  
PMID:34817438   PMID:34830154   PMID:34932943   PMID:34959735   PMID:35095413   PMID:35115501   PMID:35140203   PMID:35158017   PMID:35263589   PMID:35333571   PMID:35508327   PMID:35697861  
PMID:35705684   PMID:35720191   PMID:35875660   PMID:35904071   PMID:35921423   PMID:36030028   PMID:36049541   PMID:36103570   PMID:36223942   PMID:36302111   PMID:36323317   PMID:36477832  
PMID:36561364   PMID:36583647   PMID:36634816   PMID:36650454   PMID:36698198   PMID:36768836   PMID:36807332   PMID:36898840   PMID:36937045   PMID:36940752   PMID:37033371   PMID:37101198  
PMID:37296632   PMID:37391431   PMID:37478173   PMID:37585189   PMID:37628800   PMID:37643860   PMID:37690945   PMID:37797886   PMID:37798747   PMID:37821377   PMID:37943660   PMID:37989590  
PMID:38072665   PMID:38325845   PMID:38339042  


Genomics

Comparative Map Data
Trpa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,942,868 - 14,989,086 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,942,872 - 14,989,086 (-)EnsemblGRCm39 Ensembl
GRCm38114,872,644 - 14,918,862 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,872,648 - 14,918,862 (-)EnsemblGRCm38mm10GRCm38
MGSCv37114,862,729 - 14,908,943 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,857,862 - 14,904,076 (-)NCBIMGSCv36mm8
Celera114,822,489 - 14,871,741 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.5NCBI
TRPA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38872,021,250 - 72,090,010 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl872,019,917 - 72,075,584 (-)EnsemblGRCh38hg38GRCh38
GRCh37872,933,485 - 72,987,819 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36873,096,040 - 73,150,373 (-)NCBINCBI36Build 36hg18NCBI36
Build 34873,096,039 - 73,150,373NCBI
Celera868,932,963 - 68,987,289 (-)NCBICelera
Cytogenetic Map8q21.11NCBI
HuRef868,428,222 - 68,482,529 (-)NCBIHuRef
CHM1_1872,986,840 - 73,041,189 (-)NCBICHM1_1
T2T-CHM13v2.0872,456,370 - 72,525,074 (-)NCBIT2T-CHM13v2.0
Trpa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr859,163,060 - 9,217,325 (+)NCBIGRCr8
mRatBN7.254,379,862 - 4,434,133 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl54,379,999 - 4,433,570 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx56,513,645 - 6,566,735 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.058,152,548 - 8,205,642 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.057,846,752 - 7,899,532 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.053,783,247 - 3,836,485 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl53,783,247 - 3,836,485 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.053,764,339 - 3,818,781 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.453,531,163 - 3,584,401 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.153,531,162 - 3,584,401 (+)NCBI
Celera53,971,809 - 4,024,939 (+)NCBICelera
Cytogenetic Map5q11NCBI
Trpa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554447,876,429 - 7,921,372 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554447,876,284 - 7,922,010 (+)NCBIChiLan1.0ChiLan1.0
TRPA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2787,759,979 - 87,813,795 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1863,389,306 - 63,443,548 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0868,551,685 - 68,605,336 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1870,208,697 - 70,262,802 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl870,210,352 - 70,262,627 (-)Ensemblpanpan1.1panPan2
TRPA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12920,951,736 - 21,000,956 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2920,951,716 - 21,001,208 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2921,214,374 - 21,266,355 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02921,050,161 - 21,102,458 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2921,050,159 - 21,111,731 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12921,102,449 - 21,154,677 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02921,151,285 - 21,203,541 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02921,431,610 - 21,483,919 (-)NCBIUU_Cfam_GSD_1.0
Trpa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530358,307,190 - 58,354,763 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366481,094,460 - 1,141,394 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366481,094,460 - 1,141,394 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl463,508,104 - 63,558,484 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1463,493,374 - 63,558,486 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2469,132,584 - 69,265,553 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1867,698,067 - 67,754,407 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl867,698,786 - 67,751,885 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603973,636,128 - 73,694,618 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474418,997,462 - 19,042,227 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474418,997,273 - 19,042,838 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

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Variants in Trpa1
1697 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:201
Interacting mature miRNAs:212
Transcripts:ENSMUST00000041447
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
38501065Nociq4_mnociceptive sensitivity QTL 4 (mouse)11202506915142285Mouse
4141646Fecq3_mfecundity QTL 3 (mouse)Not determined11291692026517685Mouse

Markers in Region
Trpa1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,872,795 - 14,872,869UniSTSGRCm38
MGSCv37114,862,876 - 14,862,950UniSTSGRCm37
Celera114,822,636 - 14,822,710UniSTS
Cytogenetic Map1A3UniSTS
cM Map14.5UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000041447   ⟹   ENSMUSP00000043594
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,942,872 - 14,989,086 (-)Ensembl
GRCm38.p6 Ensembl114,872,648 - 14,918,862 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235071   ⟹   ENSMUSP00000157371
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,943,730 - 14,989,059 (-)Ensembl
GRCm38.p6 Ensembl114,873,506 - 14,918,835 (-)Ensembl
RefSeq Acc Id: NM_001348288   ⟹   NP_001335217
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,942,868 - 14,989,086 (-)NCBI
GRCm38114,872,644 - 14,918,862 (-)NCBI
Sequence:
RefSeq Acc Id: NM_177781   ⟹   NP_808449
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,942,868 - 14,989,086 (-)NCBI
GRCm38114,872,644 - 14,918,862 (-)NCBI
MGSCv37114,862,729 - 14,908,943 (-)RGD
Celera114,822,489 - 14,871,741 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_808449   ⟸   NM_177781
- Peptide Label: isoform 1
- UniProtKB: Q0VBN5 (UniProtKB/Swiss-Prot),   Q8BLA8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001335217   ⟸   NM_001348288
- Peptide Label: isoform 2
- UniProtKB: V5TCP9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000043594   ⟸   ENSMUST00000041447
RefSeq Acc Id: ENSMUSP00000157371   ⟸   ENSMUST00000235071
Protein Domains
Ion transport

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BLA8-F1-model_v2 AlphaFold Q8BLA8 1-1125 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3522699 AgrOrtholog
Ensembl Genes ENSMUSG00000032769 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041447 ENTREZGENE
  ENSMUST00000041447.5 UniProtKB/Swiss-Prot
  ENSMUST00000235071 ENTREZGENE
  ENSMUST00000235071.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:277328 UniProtKB/Swiss-Prot
MGD MGI:3522699 ENTREZGENE
NCBI Gene 277328 ENTREZGENE
PANTHER TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS UniProtKB/Swiss-Prot
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS UniProtKB/Swiss-Prot
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS UniProtKB/TrEMBL
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trpa1 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q0VBN5 ENTREZGENE
  Q8BLA8 ENTREZGENE, UniProtKB/Swiss-Prot
  V5TCP9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q0VBN5 UniProtKB/Swiss-Prot