Tufm (Tu translation elongation factor, mitochondrial) - Rat Genome Database

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Gene: Tufm (Tu translation elongation factor, mitochondrial) Mus musculus
Analyze
Symbol: Tufm
Name: Tu translation elongation factor, mitochondrial
RGD ID: 1552222
MGI Page MGI
Description: Predicted to enable translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translation. Located in mitochondrial inner membrane and myelin sheath. Is expressed in embryo. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 4. Orthologous to human TUFM (Tu translation elongation factor, mitochondrial).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2300002G02Rik; C76308; C76389; EF-TuMT; EFTU; elongation factor Tu, mitochondrial
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm11282   Gm9755  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,086,445 - 126,089,903 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,086,533 - 126,089,903 (+)EnsemblGRCm39 Ensembl
GRCm387126,487,271 - 126,490,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,487,361 - 126,490,731 (+)EnsemblGRCm38mm10GRCm38
MGSCv377133,630,869 - 133,634,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,278,580 - 126,281,878 (+)NCBIMGSCv36mm8
Celera7126,339,931 - 126,343,307 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
(Z)-3-butylidenephthalide  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
all-trans-retinoic acid  (EXP)
artesunate  (ISO)
aspartame  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
buspirone  (ISO)
butan-1-ol  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
clofibrate  (ISO)
clofibric acid  (ISO)
cyclosporin A  (EXP,ISO)
Diisodecyl phthalate  (EXP)
disodium selenite  (ISO)
dopamine  (ISO)
doxorubicin  (EXP,ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
etoposide  (EXP)
fenvalerate  (ISO)
flutamide  (ISO)
gentamycin  (ISO)
glyphosate  (EXP)
gold atom  (EXP)
gold(0)  (EXP)
hexadecanoic acid  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
lovastatin  (EXP)
methamphetamine  (ISO)
microcystin-LR  (ISO)
monosodium L-glutamate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
Nonylphenol  (ISO)
oleic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraoxon  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
Propiverine  (ISO)
quercetin  (ISO)
resveratrol  (EXP,ISO)
rotenone  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
temozolomide  (ISO)
triptonide  (EXP)
valproic acid  (EXP,ISO)
warfarin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10834841   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12865426   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16959763   PMID:17634366   PMID:18614015   PMID:18799693   PMID:21267068   PMID:21565611   PMID:21589869   PMID:21677750   PMID:21873635   PMID:22749352   PMID:24457600  
PMID:26025364   PMID:26792178   PMID:27889896   PMID:28378742   PMID:29676259   PMID:30068389   PMID:30196744   PMID:30550785   PMID:31472450   PMID:32325033   PMID:33398033   PMID:33774866  
PMID:34474245   PMID:36114006   PMID:36293380   PMID:36470869   PMID:37839992  


Genomics

Comparative Map Data
Tufm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,086,445 - 126,089,903 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,086,533 - 126,089,903 (+)EnsemblGRCm39 Ensembl
GRCm387126,487,271 - 126,490,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,487,361 - 126,490,731 (+)EnsemblGRCm38mm10GRCm38
MGSCv377133,630,869 - 133,634,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,278,580 - 126,281,878 (+)NCBIMGSCv36mm8
Celera7126,339,931 - 126,343,307 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.08NCBI
TUFM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381628,842,411 - 28,846,348 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1628,842,411 - 28,846,348 (-)EnsemblGRCh38hg38GRCh38
GRCh371628,853,732 - 28,857,669 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361628,761,613 - 28,765,144 (-)NCBINCBI36Build 36hg18NCBI36
Build 341628,761,613 - 28,765,144NCBI
Celera1627,808,340 - 27,812,337 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1626,721,293 - 26,725,288 (-)NCBIHuRef
CHM1_11629,865,576 - 29,869,573 (-)NCBICHM1_1
T2T-CHM13v2.01629,122,980 - 29,140,210 (-)NCBIT2T-CHM13v2.0
Tufm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,504,373 - 190,507,980 (+)NCBIGRCr8
mRatBN7.21181,073,788 - 181,077,395 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,073,788 - 181,077,395 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,404,383 - 189,407,991 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01196,590,469 - 196,594,077 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01189,278,338 - 189,281,945 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01197,903,582 - 197,907,189 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1197,903,582 - 197,907,189 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01204,882,342 - 204,885,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,631,333 - 185,634,940 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,780,653 - 185,784,699 (+)NCBI
Celera1178,732,489 - 178,736,096 (+)NCBICelera
Cytogenetic Map1q36NCBI
Tufm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554936,619,205 - 6,623,780 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554936,619,205 - 6,623,780 (+)NCBIChiLan1.0ChiLan1.0
TUFM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21831,899,627 - 31,917,744 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11636,731,726 - 36,735,282 (+)NCBINHGRI_mPanPan1
PanPan1.11629,229,905 - 29,233,508 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1629,227,852 - 29,233,513 (-)Ensemblpanpan1.1panPan2
TUFM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,357,223 - 18,360,929 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,357,244 - 18,361,557 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,935,471 - 19,939,110 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,493,014 - 18,496,651 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,493,018 - 18,496,775 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,292,398 - 18,296,035 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,207,329 - 18,210,966 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,523,444 - 18,527,083 (-)NCBIUU_Cfam_GSD_1.0
Tufm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,761,676 - 123,765,829 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,859,552 - 11,865,747 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650111,859,558 - 11,863,689 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUFM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,521,128 - 18,524,959 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,521,119 - 18,524,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,706,416 - 18,709,827 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TUFM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,221,203 - 26,225,080 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl526,221,337 - 26,225,083 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660683,348,805 - 3,353,298 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tufm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478212,914,359 - 12,918,194 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478212,914,362 - 12,918,194 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tufm
89 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:351
Count of miRNA genes:156
Interacting mature miRNAs:174
Transcripts:ENSMUST00000098048, ENSMUST00000106392
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
1357613Bsbob2_mBSB obesity 2 (mouse)Not determined7122250663128819324Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
38501066Tip2_mtuberculosis immunophenotype 2, spleen CFU (mouse)7124299223126899172Mouse
4141945Il4ppq_mIL-4 producing potential QTL (mouse)Not determined7124513662128819324Mouse

Markers in Region
RH126559  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38867,514,060 - 67,514,292UniSTSGRCm38
GRCm387126,490,434 - 126,490,667UniSTSGRCm38
MGSCv377133,633,948 - 133,634,181UniSTSGRCm37
MGSCv37870,037,959 - 70,038,191UniSTSGRCm37
Celera870,067,517 - 70,067,749UniSTS
Celera7126,343,010 - 126,343,243UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map8B3.3UniSTS
RH127594  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38867,514,269 - 67,514,481UniSTSGRCm38
GRCm387126,489,836 - 126,490,457UniSTSGRCm38
MGSCv377133,633,350 - 133,633,971UniSTSGRCm37
MGSCv37870,038,168 - 70,038,380UniSTSGRCm37
Celera870,067,726 - 70,067,938UniSTS
Celera7126,342,412 - 126,343,033UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map8B3.3UniSTS
C76308  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,490,204 - 126,490,282UniSTSGRCm38
MGSCv377133,633,718 - 133,633,796UniSTSGRCm37
Celera7126,342,780 - 126,342,858UniSTS
Cytogenetic Map7F3UniSTS
Whitehead/MRC_RH71292.32UniSTS
C76389  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,490,283 - 126,490,501UniSTSGRCm38
MGSCv377133,633,797 - 133,634,015UniSTSGRCm37
Celera7126,342,859 - 126,343,077UniSTS
Cytogenetic Map7F3UniSTS
Whitehead/MRC_RH71289.57UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU699735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY246546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000098048   ⟹   ENSMUSP00000095656
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,086,533 - 126,089,899 (+)Ensembl
GRCm38.p6 Ensembl7126,487,361 - 126,490,727 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106392   ⟹   ENSMUSP00000102000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,086,550 - 126,089,903 (+)Ensembl
GRCm38.p6 Ensembl7126,487,378 - 126,490,731 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205346
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,086,801 - 126,088,118 (+)Ensembl
GRCm38.p6 Ensembl7126,487,629 - 126,488,946 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,087,786 - 126,088,305 (+)Ensembl
GRCm38.p6 Ensembl7126,488,614 - 126,489,133 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206055   ⟹   ENSMUSP00000145664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,087,858 - 126,088,547 (+)Ensembl
GRCm38.p6 Ensembl7126,488,686 - 126,489,375 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206572   ⟹   ENSMUSP00000145924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,088,543 - 126,089,401 (+)Ensembl
GRCm38.p6 Ensembl7126,489,371 - 126,490,229 (+)Ensembl
RefSeq Acc Id: NM_001163713   ⟹   NP_001157185
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,086,527 - 126,089,903 (+)NCBI
GRCm387126,487,355 - 126,490,731 (+)NCBI
MGSCv377133,630,869 - 133,634,245 (+)RGD
Celera7126,339,931 - 126,343,307 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_172745   ⟹   NP_766333
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,086,527 - 126,089,903 (+)NCBI
GRCm387126,487,355 - 126,490,731 (+)NCBI
MGSCv377133,630,869 - 133,634,245 (+)RGD
Celera7126,339,931 - 126,343,307 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006507719   ⟹   XP_006507782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,086,445 - 126,089,903 (+)NCBI
GRCm387126,487,271 - 126,490,731 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153012   ⟹   XP_036008905
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,086,510 - 126,089,903 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_766333   ⟸   NM_172745
- Peptide Label: isoform 1
- UniProtKB: Q497E7 (UniProtKB/Swiss-Prot),   Q6P919 (UniProtKB/Swiss-Prot),   Q8BFR5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001157185   ⟸   NM_001163713
- Peptide Label: isoform 2
- UniProtKB: Q8BFR5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006507782   ⟸   XM_006507719
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000145664   ⟸   ENSMUST00000206055
RefSeq Acc Id: ENSMUSP00000145924   ⟸   ENSMUST00000206572
RefSeq Acc Id: ENSMUSP00000102000   ⟸   ENSMUST00000106392
RefSeq Acc Id: ENSMUSP00000095656   ⟸   ENSMUST00000098048
RefSeq Acc Id: XP_036008905   ⟸   XM_036153012
- Peptide Label: isoform X2
Protein Domains
tr-type G   Translation elongation factor EFTu-like   Translation elongation factor EFTu/EF1A C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BFR5-F1-model_v2 AlphaFold Q8BFR5 1-452 view protein structure

Promoters
RGD ID:8665539
Promoter ID:EPDNEW_M10801
Type:initiation region
Name:Tufm_1
Description:Mus musculus Tu translation elongation factor, mitochondrial, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387126,487,374 - 126,487,434EPDNEW
RGD ID:6842281
Promoter ID:MM_KWN:52671
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001163713,   NM_172745,   UC009JRO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,630,469 - 133,630,969 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923686 AgrOrtholog
Ensembl Genes ENSMUSG00000073838 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098048 ENTREZGENE
  ENSMUST00000098048.6 UniProtKB/Swiss-Prot
  ENSMUST00000106392 ENTREZGENE
  ENSMUST00000106392.10 UniProtKB/Swiss-Prot
  ENSMUST00000206055.2 UniProtKB/TrEMBL
  ENSMUST00000206572.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translation factors UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EF-Tu_GTP-bd UniProtKB/Swiss-Prot
  EFTu-like_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EFTU_2 UniProtKB/Swiss-Prot
  G_TR_CS UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_GTP-bd_dom UniProtKB/Swiss-Prot
  Transl_B-barrel_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_elong_EFTu/EF1A_bac/org UniProtKB/Swiss-Prot
  Transl_elong_EFTu/EF1A_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:233870 UniProtKB/Swiss-Prot
MGD MGI:1923686 ENTREZGENE
NCBI Gene 233870 ENTREZGENE
PANTHER ELONGATION FACTOR TU, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ELONGATION FACTOR TU-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GTP_EFTU UniProtKB/Swiss-Prot
  GTP_EFTU_D2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GTP_EFTU_D3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tufm PhenoGen
PRINTS ELONGATNFCT UniProtKB/Swiss-Prot
PROSITE G_TR_1 UniProtKB/Swiss-Prot
  G_TR_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50447 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50465 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RNQ6_MOUSE UniProtKB/TrEMBL
  A0A0U1RPC4_MOUSE UniProtKB/TrEMBL
  EFTU_MOUSE UniProtKB/Swiss-Prot
  Q497E7 ENTREZGENE
  Q6P919 ENTREZGENE
  Q8BFR5 ENTREZGENE
UniProt Secondary Q497E7 UniProtKB/Swiss-Prot
  Q6P919 UniProtKB/Swiss-Prot