Tmtc2 (transmembrane and tetratricopeptide repeat containing 2) - Rat Genome Database

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Gene: Tmtc2 (transmembrane and tetratricopeptide repeat containing 2) Mus musculus
Analyze
Symbol: Tmtc2
Name: transmembrane and tetratricopeptide repeat containing 2
RGD ID: 1552066
MGI Page MGI
Description: Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be involved in calcium ion homeostasis and protein O-linked mannosylation. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including cranial ganglion; gut; limb segment; musculoskeletal system; and sensory organ. Orthologous to human TMTC2 (transmembrane O-mannosyltransferase targeting cadherins 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 8430438D04Rik; D330034A10Rik; MGC116613; transmembrane and TPR repeat-containing protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910105,023,524 - 105,410,340 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10105,023,524 - 105,410,312 (-)EnsemblGRCm39 Ensembl
GRCm3810105,187,663 - 105,574,479 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10105,187,663 - 105,574,451 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710104,624,719 - 105,011,535 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610104,591,773 - 104,978,561 (-)NCBIMGSCv36mm8
Celera10107,116,217 - 107,505,137 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1054.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methoxyethanol  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-methylcholanthrene  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP,ISO)
amiodarone  (EXP)
amphetamine  (ISO)
aristolochic acid A  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (ISO)
atrazine  (ISO)
Benoxacor  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chloroprene  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
cidofovir anhydrous  (ISO)
cisplatin  (EXP,ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDT  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (EXP,ISO)
dichloroacetic acid  (EXP)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
hydrogen peroxide  (ISO)
ifosfamide  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Association of TMTC2 With Human Nonsyndromic Sensorineural Hearing Loss. Runge CL, etal., JAMA Otolaryngol Head Neck Surg. 2016 Jun 16. doi: 10.1001/jamaoto.2016.1444.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635  


Genomics

Comparative Map Data
Tmtc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910105,023,524 - 105,410,340 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10105,023,524 - 105,410,312 (-)EnsemblGRCm39 Ensembl
GRCm3810105,187,663 - 105,574,479 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10105,187,663 - 105,574,451 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710104,624,719 - 105,011,535 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610104,591,773 - 104,978,561 (-)NCBIMGSCv36mm8
Celera10107,116,217 - 107,505,137 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1054.72NCBI
TMTC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381282,686,906 - 83,134,866 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1282,686,880 - 83,134,870 (+)EnsemblGRCh38hg38GRCh38
GRCh371283,080,685 - 83,528,645 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361281,605,065 - 82,052,196 (+)NCBINCBI36Build 36hg18NCBI36
Celera1282,748,495 - 83,195,421 (+)NCBICelera
Cytogenetic Map12q21.31NCBI
HuRef1280,139,235 - 80,586,094 (+)NCBIHuRef
CHM1_11283,046,833 - 83,493,575 (+)NCBICHM1_1
T2T-CHM13v2.01282,666,441 - 83,114,534 (+)NCBIT2T-CHM13v2.0
Tmtc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8742,280,746 - 42,695,651 (-)NCBIGRCr8
mRatBN7.2740,392,377 - 40,806,685 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl740,394,220 - 40,807,298 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx742,297,607 - 42,708,576 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0744,500,689 - 44,911,641 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0744,275,578 - 44,686,535 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0747,179,596 - 47,586,777 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl747,181,981 - 47,586,137 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0747,197,110 - 47,603,261 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4743,667,983 - 44,133,854 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1743,688,792 - 44,154,492 (-)NCBI
Celera737,294,447 - 37,702,308 (-)NCBICelera
Cytogenetic Map7q21NCBI
Tmtc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540520,969,952 - 21,359,783 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540520,969,836 - 21,357,939 (+)NCBIChiLan1.0ChiLan1.0
TMTC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21090,738,676 - 91,185,559 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11290,735,094 - 91,186,578 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01280,209,070 - 80,660,058 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11283,316,647 - 83,761,761 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1283,317,358 - 83,759,281 (+)Ensemblpanpan1.1panPan2
TMTC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11524,629,610 - 25,017,936 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1524,629,157 - 25,016,555 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1525,060,632 - 25,448,131 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01525,377,180 - 25,529,388 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1525,008,752 - 25,526,997 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11524,585,728 - 24,973,537 (+)NCBIUMICH_Zoey_3.1
Tmtc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494535,255,207 - 35,632,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936507603,868 - 980,230 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936507603,222 - 980,229 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMTC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl598,697,035 - 99,229,550 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1598,695,404 - 99,085,243 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25103,474,951 - 103,667,323 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMTC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11178,130,490 - 78,569,546 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1178,296,438 - 78,569,740 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037166,791,023 - 167,244,956 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmtc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248371,998,083 - 2,398,451 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248371,998,443 - 2,398,290 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmtc2
14669 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1467
Count of miRNA genes:676
Interacting mature miRNAs:851
Transcripts:ENSMUST00000061506, ENSMUST00000130665, ENSMUST00000133441, ENSMUST00000139741, ENSMUST00000143691, ENSMUST00000147997
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
13208554Lgth11_mbody length 11 (mouse)1090835862120835905Mouse
12910821Ogrq4_moverall growth rate QTL 4 (mouse)1092169056107319989Mouse
4142074Tmevp2_mTheiler's murine encephalomyelitis virus persistence 2 (mouse)Not determined92729941111568319Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
11059552Lmr32c_mleishmaniasis resistance 32c (mouse)1099309418116220862Mouse
11059544Lmr32_mleishmaniasis resistance 32 (mouse)1099309418116220862Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
26884388Skwq7_mskull length QTL 7, 10 week (mouse)10101735861113735905Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102735861123235905Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
4141269Ipng2_mimprinted postnatal growth 2 (mouse)Not determined105088254118497353Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse

Markers in Region
RH133880  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810105,187,841 - 105,188,043UniSTSGRCm38
MGSCv3710104,624,897 - 104,625,099UniSTSGRCm37
Celera10107,116,395 - 107,116,597UniSTS
Cytogenetic Map10D1UniSTS
MHAa97a11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810105,288,420 - 105,288,614UniSTSGRCm38
MGSCv3710104,725,476 - 104,725,670UniSTSGRCm37
Celera10107,220,619 - 107,220,813UniSTS
Cytogenetic Map10D1UniSTS
Whitehead_YAC10 UniSTS
D10Mit133  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810105,252,393 - 105,252,530UniSTSGRCm38
MGSCv3710104,689,449 - 104,689,586UniSTSGRCm37
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Whitehead Genetic1057.9UniSTS
Whitehead/MRC_RH101158.52UniSTS
D10Mit135  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810105,542,935 - 105,543,081UniSTSGRCm38
MGSCv3710104,979,991 - 104,980,137UniSTSGRCm37
Celera10107,473,309 - 107,473,455UniSTS
Cytogenetic Map10D1UniSTS
cM Map1062.0UniSTS
Whitehead Genetic1062.3UniSTS
Whitehead/MRC_RH101158.52UniSTS
Whitehead_YAC10 UniSTS
AU047328  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810105,517,710 - 105,517,935UniSTSGRCm38
MGSCv3710104,954,766 - 104,954,991UniSTSGRCm37
Cytogenetic Map10D1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_177368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_380404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
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  BB652678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
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RefSeq Acc Id: ENSMUST00000061506   ⟹   ENSMUSP00000061919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10105,023,524 - 105,410,296 (-)Ensembl
GRCm38.p6 Ensembl10105,187,663 - 105,574,435 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10105,023,524 - 105,070,810 (-)Ensembl
GRCm38.p6 Ensembl10105,187,663 - 105,234,949 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133441
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10105,025,523 - 105,035,565 (-)Ensembl
GRCm38.p6 Ensembl10105,189,662 - 105,199,704 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10105,249,304 - 105,371,849 (-)Ensembl
GRCm38.p6 Ensembl10105,413,443 - 105,535,988 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10105,105,748 - 105,410,312 (-)Ensembl
GRCm38.p6 Ensembl10105,269,887 - 105,574,451 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147997
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10105,025,364 - 105,070,795 (-)Ensembl
GRCm38.p6 Ensembl10105,189,503 - 105,234,934 (-)Ensembl
RefSeq Acc Id: NM_177368   ⟹   NP_796342
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910105,023,524 - 105,410,340 (-)NCBI
GRCm3810105,187,663 - 105,574,479 (-)NCBI
MGSCv3710104,624,719 - 105,011,535 (-)RGD
Celera10107,116,217 - 107,505,137 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004936193
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910105,023,524 - 105,410,334 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936194
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910105,023,524 - 105,410,329 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936195
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910105,023,524 - 105,410,325 (-)NCBI
Sequence:
RefSeq Acc Id: XR_380404
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910105,023,976 - 105,410,334 (-)NCBI
GRCm3810105,187,663 - 105,574,473 (-)NCBI
Sequence:
RefSeq Acc Id: NP_796342   ⟸   NM_177368
- Peptide Label: precursor
- UniProtKB: Q5U620 (UniProtKB/Swiss-Prot),   B2RRD8 (UniProtKB/Swiss-Prot),   Q8C787 (UniProtKB/Swiss-Prot),   Q56A06 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000061919   ⟸   ENSMUST00000061506

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q56A06-F1-model_v2 AlphaFold Q56A06 1-836 view protein structure

Promoters
RGD ID:6820041
Promoter ID:MM_KWN:5548
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000061634,   UC007GYN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610105,010,851 - 105,011,367 (-)MPROMDB
RGD ID:8673196
Promoter ID:EPDNEW_M14629
Type:multiple initiation site
Name:Tmtc2_1
Description:Mus musculus transmembrane and tetratricopeptide repeat containing2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810105,574,396 - 105,574,456EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914057 AgrOrtholog
Ensembl Genes ENSMUSG00000036019 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000061506 ENTREZGENE
  ENSMUST00000061506.9 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot
InterPro DUF1736 UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
  TPR_1 UniProtKB/Swiss-Prot
  TPR_repeat UniProtKB/Swiss-Prot
KEGG Report mmu:278279 UniProtKB/Swiss-Prot
MGD MGI:1914057 ENTREZGENE
NCBI Gene 278279 ENTREZGENE
PANTHER PROTEIN O-MANNOSYL-TRANSFERASE TMTC2 UniProtKB/Swiss-Prot
  PROTEIN O-MANNOSYL-TRANSFERASE TMTC2 UniProtKB/Swiss-Prot
Pfam DUF1736 UniProtKB/Swiss-Prot
  TPR_1 UniProtKB/Swiss-Prot
  TPR_12 UniProtKB/Swiss-Prot
  TPR_16 UniProtKB/Swiss-Prot
  TPR_8 UniProtKB/Swiss-Prot
PhenoGen Tmtc2 PhenoGen
PROSITE TPR UniProtKB/Swiss-Prot
  TPR_REGION UniProtKB/Swiss-Prot
SMART TPR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot
UniProt B2RRD8 ENTREZGENE
  Q56A06 ENTREZGENE
  Q5U620 ENTREZGENE
  Q8C787 ENTREZGENE
  Q9CX93_MOUSE UniProtKB/TrEMBL
  TMTC2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B2RRD8 UniProtKB/Swiss-Prot
  Q5U620 UniProtKB/Swiss-Prot
  Q8C787 UniProtKB/Swiss-Prot