Atp13a2 (ATPase type 13A2) - Rat Genome Database

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Gene: Atp13a2 (ATPase type 13A2) Mus musculus
Analyze
Symbol: Atp13a2
Name: ATPase type 13A2
RGD ID: 1551948
MGI Page MGI
Description: Predicted to enable ATPase-coupled monoatomic cation transmembrane transporter activity; phospholipid binding activity; and polyamine transmembrane transporter activity. Involved in several processes, including autophagosome-lysosome fusion; intracellular zinc ion homeostasis; and positive regulation of exosomal secretion. Located in neuron projection; neuronal cell body; and vesicle membrane. Is expressed in several structures, including alimentary system; central nervous system; eye; genitourinary system; and immune system. Used to study Kufor-Rakeb syndrome. Human ortholog(s) of this gene implicated in Kufor-Rakeb syndrome; Parkinson's disease; and hereditary spastic paraplegia 78. Orthologous to human ATP13A2 (ATPase cation transporting 13A2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110012E06Rik; AA589443; cation-transporting ATPase 13A2; polyamine-transporting ATPase 13A2; probable cation-transporting ATPase 13A2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394140,711,812 - 140,734,641 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4140,714,184 - 140,734,641 (+)EnsemblGRCm39 Ensembl
GRCm384140,986,216 - 141,007,330 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4140,986,873 - 141,007,330 (+)EnsemblGRCm38mm10GRCm38
MGSCv374140,542,788 - 140,563,616 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,259,004 - 140,279,406 (+)NCBIMGSCv36mm8
Celera4142,787,644 - 142,807,639 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map473.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genes associated with Parkinson's disease: regulation of autophagy and beyond. Beilina A and Cookson MR, J Neurochem. 2015 Jul 30. doi: 10.1111/jnc.13266.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15381061   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17614941   PMID:21267068   PMID:21308776   PMID:21677750   PMID:21873635   PMID:22186024   PMID:22198378   PMID:22442086   PMID:23393156   PMID:24194600   PMID:24334770   PMID:25392495  
PMID:25855184   PMID:26848562   PMID:27278822   PMID:27619535   PMID:27770614   PMID:28595912   PMID:29407413   PMID:29859891   PMID:30538141   PMID:32554809   PMID:34536552   PMID:35887392  
PMID:37243374  


Genomics

Comparative Map Data
Atp13a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394140,711,812 - 140,734,641 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4140,714,184 - 140,734,641 (+)EnsemblGRCm39 Ensembl
GRCm384140,986,216 - 141,007,330 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4140,986,873 - 141,007,330 (+)EnsemblGRCm38mm10GRCm38
MGSCv374140,542,788 - 140,563,616 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,259,004 - 140,279,406 (+)NCBIMGSCv36mm8
Celera4142,787,644 - 142,807,639 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map473.29NCBI
ATP13A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,985,958 - 17,011,928 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,985,958 - 17,011,928 (-)EnsemblGRCh38hg38GRCh38
GRCh37117,312,453 - 17,338,423 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36117,185,040 - 17,210,854 (-)NCBINCBI36Build 36hg18NCBI36
Build 34117,057,758 - 17,083,573NCBI
Celera115,634,791 - 15,660,760 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef115,556,532 - 15,582,505 (-)NCBIHuRef
CHM1_1117,420,791 - 17,446,761 (-)NCBICHM1_1
T2T-CHM13v2.0116,796,381 - 16,822,349 (-)NCBIT2T-CHM13v2.0
Atp13a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85158,575,727 - 158,595,157 (+)NCBIGRCr8
mRatBN7.25153,292,722 - 153,312,143 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,292,751 - 153,312,139 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5155,981,005 - 156,000,631 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05157,754,276 - 157,773,902 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05157,743,460 - 157,763,086 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,512,208 - 159,531,631 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,512,285 - 159,531,637 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,224,470 - 163,243,886 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45159,847,016 - 159,866,362 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15159,857,176 - 159,876,542 (+)NCBI
Celera5151,657,698 - 151,677,052 (+)NCBICelera
Cytogenetic Map5q36NCBI
Atp13a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555271,806,009 - 1,823,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555271,805,854 - 1,823,623 (+)NCBIChiLan1.0ChiLan1.0
ATP13A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21210,118,487 - 210,144,515 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11209,237,298 - 209,263,315 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,929,613 - 15,955,631 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,975,538 - 17,006,022 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,986,385 - 17,006,033 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl116,975,544 - 17,006,022 (-)Ensemblpanpan1.1panPan2
ATP13A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,196,355 - 81,215,736 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,196,463 - 81,215,689 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha277,733,475 - 77,752,482 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,842,888 - 81,861,861 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl281,842,987 - 81,861,861 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,595,908 - 78,614,871 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0279,612,457 - 79,631,767 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0280,680,908 - 80,699,865 (+)NCBIUU_Cfam_GSD_1.0
Atp13a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505838,143,432 - 38,156,097 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,968,506 - 3,980,815 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364743,968,216 - 3,980,821 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP13A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,618,319 - 75,638,591 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1675,618,317 - 75,638,591 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2669,931,621 - 69,951,929 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP13A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120115,578,185 - 115,605,416 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20115,578,261 - 115,605,647 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666033515,071 - 542,556 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp13a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,614,827 - 2,631,793 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247642,614,541 - 2,631,972 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp13a2
402 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1885
Count of miRNA genes:684
Interacting mature miRNAs:843
Transcripts:ENSMUST00000037055, ENSMUST00000125797, ENSMUST00000127833, ENSMUST00000135117, ENSMUST00000137630, ENSMUST00000151517, ENSMUST00000156995, ENSMUST00000168047, ENSMUST00000170797
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131650724140879275Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1357534Cinda3_mcytokine induced activation 3 (mouse)Not determined4137617848142289472Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse

Markers in Region
RH124964  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384141,007,063 - 141,007,143UniSTSGRCm38
MGSCv374140,562,978 - 140,563,058UniSTSGRCm37
Cytogenetic Map4D3UniSTS
Atp13a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D3UniSTS
cM Map4 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK003623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000037055   ⟹   ENSMUSP00000039648
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4140,714,184 - 140,734,641 (+)Ensembl
GRCm38.p6 Ensembl4140,986,873 - 141,007,330 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4140,714,301 - 140,725,478 (+)Ensembl
GRCm38.p6 Ensembl4140,986,990 - 140,998,167 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127833   ⟹   ENSMUSP00000132183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4140,714,184 - 140,734,641 (+)Ensembl
GRCm38.p6 Ensembl4140,986,873 - 141,007,330 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4140,723,523 - 140,728,184 (+)Ensembl
GRCm38.p6 Ensembl4140,996,212 - 141,000,873 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4140,731,728 - 140,734,034 (+)Ensembl
GRCm38.p6 Ensembl4141,004,417 - 141,006,723 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4140,714,211 - 140,734,641 (+)Ensembl
GRCm38.p6 Ensembl4140,986,900 - 141,007,330 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4140,722,913 - 140,729,245 (+)Ensembl
GRCm38.p6 Ensembl4140,995,602 - 141,001,934 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168047   ⟹   ENSMUSP00000126461
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4140,714,184 - 140,732,398 (+)Ensembl
GRCm38.p6 Ensembl4140,986,873 - 141,005,087 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4140,728,022 - 140,729,401 (+)Ensembl
GRCm38.p6 Ensembl4141,000,711 - 141,002,090 (+)Ensembl
RefSeq Acc Id: NM_001164366   ⟹   NP_001157838
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394140,714,232 - 140,734,641 (+)NCBI
GRCm384140,986,921 - 141,007,330 (+)NCBI
MGSCv374140,542,788 - 140,563,616 (+)RGD
Celera4142,787,644 - 142,807,639 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001379619   ⟹   NP_001366548
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394140,714,232 - 140,734,641 (+)NCBI
GRCm384140,986,921 - 141,007,330 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379620   ⟹   NP_001366549
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394140,714,232 - 140,734,641 (+)NCBI
GRCm384140,986,921 - 141,007,330 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379621   ⟹   NP_001366550
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394140,714,232 - 140,734,641 (+)NCBI
GRCm384140,986,921 - 141,007,330 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379622   ⟹   NP_001366551
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394140,714,232 - 140,734,641 (+)NCBI
GRCm384140,986,921 - 141,007,330 (+)NCBI
Sequence:
RefSeq Acc Id: NM_029097   ⟹   NP_083373
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394140,714,232 - 140,734,641 (+)NCBI
GRCm384140,986,921 - 141,007,330 (+)NCBI
MGSCv374140,542,788 - 140,563,616 (+)RGD
Celera4142,787,644 - 142,807,639 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006539236   ⟹   XP_006539299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394140,714,172 - 140,734,641 (+)NCBI
GRCm384140,986,861 - 141,007,330 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006539237   ⟹   XP_006539300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394140,714,172 - 140,734,641 (+)NCBI
GRCm384140,986,861 - 141,007,330 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164509   ⟹   XP_036020402
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394140,711,812 - 140,734,641 (+)NCBI
Sequence:
RefSeq Acc Id: NP_083373   ⟸   NM_029097
- Peptide Label: isoform 1
- UniProtKB: A2AA78 (UniProtKB/Swiss-Prot),   Q8CG98 (UniProtKB/Swiss-Prot),   Q9CTG6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001157838   ⟸   NM_001164366
- Peptide Label: isoform 2
- UniProtKB: E9Q2A4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539299   ⟸   XM_006539236
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006539300   ⟸   XM_006539237
- Peptide Label: isoform X2
- UniProtKB: E9PYX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001366551   ⟸   NM_001379622
- Peptide Label: isoform 6
- UniProtKB: E9PYX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001366548   ⟸   NM_001379619
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001366549   ⟸   NM_001379620
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001366550   ⟸   NM_001379621
- Peptide Label: isoform 5
- UniProtKB: E9PYX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000132183   ⟸   ENSMUST00000127833
RefSeq Acc Id: ENSMUSP00000039648   ⟸   ENSMUST00000037055
RefSeq Acc Id: ENSMUSP00000126461   ⟸   ENSMUST00000168047
RefSeq Acc Id: XP_036020402   ⟸   XM_036164509
- Peptide Label: isoform X3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CTG6-F1-model_v2 AlphaFold Q9CTG6 1-1169 view protein structure

Promoters
RGD ID:6834916
Promoter ID:MM_KWN:40437
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:NM_001164366,   NM_029097,   OTTMUST00000023463,   UC008VNM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364140,542,629 - 140,543,129 (+)MPROMDB
RGD ID:6834917
Promoter ID:MM_KWN:40439
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Spleen
Transcripts:OTTMUST00000023467
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364140,551,704 - 140,552,204 (+)MPROMDB
RGD ID:6848785
Promoter ID:MM_TRO:7150
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:MTR013802.4.2558.3
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364140,557,521 - 140,558,021 (+)MPROMDB
RGD ID:6848784
Promoter ID:MM_TRO:7151
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Lung
Transcripts:MTR013802.4.2558.4,   MTR013802.4.2558.5
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364140,558,111 - 140,558,722 (+)MPROMDB
RGD ID:6834918
Promoter ID:MM_KWN:40440
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Lung
Transcripts:OTTMUST00000023468
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364140,559,561 - 140,560,417 (+)MPROMDB
RGD ID:6848783
Promoter ID:MM_TRO:7152
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour
Transcripts:MTR013802.4.2558.6
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364140,560,791 - 140,561,291 (+)MPROMDB
RGD ID:6834920
Promoter ID:MM_KWN:40441
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung
Transcripts:OTTMUST00000023465
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364140,561,166 - 140,562,562 (+)MPROMDB
RGD ID:6885280
Promoter ID:EPDNEW_M6091
Type:initiation region
Name:Atp13a2_1
Description:Mus musculus ATPase type 13A2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384140,986,921 - 140,986,981EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922022 AgrOrtholog
Ensembl Genes ENSMUSG00000036622 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000037055 ENTREZGENE
  ENSMUST00000037055.14 UniProtKB/Swiss-Prot
  ENSMUST00000127833 ENTREZGENE
  ENSMUST00000127833.3 UniProtKB/TrEMBL
  ENSMUST00000168047 ENTREZGENE
  ENSMUST00000168047.8 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATPase_P-typ_cation-transptr_N UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-type_TPase_V UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P5A-ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P5B-type_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74772 UniProtKB/Swiss-Prot
MGD MGI:1922022 ENTREZGENE
NCBI Gene 74772 ENTREZGENE
PANTHER CATION-TRANSPORTING ATPASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYAMINE-TRANSPORTING ATPASE 13A2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cation_ATPase_N UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P5-ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp13a2 PhenoGen
PRINTS CATATPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HATPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81653 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81665 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AA78 ENTREZGENE
  AT132_MOUSE UniProtKB/Swiss-Prot
  E9PYX5 ENTREZGENE, UniProtKB/TrEMBL
  E9Q2A4 ENTREZGENE, UniProtKB/TrEMBL
  Q8CG98 ENTREZGENE
  Q8CIJ9_MOUSE UniProtKB/TrEMBL
  Q9CTG6 ENTREZGENE
UniProt Secondary A2AA78 UniProtKB/Swiss-Prot
  Q8CG98 UniProtKB/Swiss-Prot