Cop1 (COP1, E3 ubiquitin ligase) - Rat Genome Database

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Gene: Cop1 (COP1, E3 ubiquitin ligase) Mus musculus
Analyze
Symbol: Cop1
Name: COP1, E3 ubiquitin ligase
RGD ID: 1550065
MGI Page MGI
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; proteasome-mediated ubiquitin-dependent protein catabolic process; and response to ionizing radiation. Predicted to be located in Golgi membrane. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex. Is expressed in several structures, including central nervous system; genitourinary system; limb; and liver. Orthologous to human COP1 (COP1 E3 ubiquitin ligase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI316802; C80879; Co; constitutive photomorphogenesis protein 1 homolog; constitutive photomorphogenic protein 1; E3 ubiquitin-protein ligase COP1; E3 ubiquitin-protein ligase RFWD2; mCOP1; Rfwd; Rfwd2; ring finger and WD repeat domain 2; RING finger and WD repeat domain protein 2; RING-type E3 ubiquitin transferase RFWD2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm12647   Gm13396   Gm14894   Gm15065   Gm18658   Gm18664   Gm18665   Gm18672   Gm18676   Gm18688   Gm18696   Gm18703   Gm18712   Gm18713   Gm18714   Gm18715   Gm6206  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,059,734 - 159,182,442 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,059,890 - 159,175,210 (+)EnsemblGRCm39 Ensembl
GRCm381159,232,156 - 159,354,872 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,232,320 - 159,347,640 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,162,457 - 161,277,711 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,069,003 - 161,184,257 (+)NCBIMGSCv36mm8
Celera1161,631,243 - 161,748,921 (+)NCBICelera
Cytogenetic Map1H1NCBI
cM Map169.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Modes of p53 regulation. Kruse JP and Gu W, Cell. 2009 May 15;137(4):609-22. doi: 10.1016/j.cell.2009.04.050.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10395541   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466024   PMID:12477932   PMID:12520002   PMID:14610273  
PMID:15489334   PMID:16141072   PMID:16141073   PMID:16794074   PMID:17805301   PMID:17967808   PMID:18287559   PMID:19805145   PMID:20410507   PMID:21267068   PMID:21297076   PMID:21403399  
PMID:21572435   PMID:21873635   PMID:23269672   PMID:23439647   PMID:23833191   PMID:23884858   PMID:26627735   PMID:27335464   PMID:28174279   PMID:28351980   PMID:29296815   PMID:30322923  
PMID:30692133   PMID:31092598   PMID:31125554   PMID:31155351   PMID:32795415   PMID:32968282   PMID:33911083   PMID:34582788   PMID:36191790   PMID:37895214  


Genomics

Comparative Map Data
Cop1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,059,734 - 159,182,442 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,059,890 - 159,175,210 (+)EnsemblGRCm39 Ensembl
GRCm381159,232,156 - 159,354,872 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,232,320 - 159,347,640 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,162,457 - 161,277,711 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,069,003 - 161,184,257 (+)NCBIMGSCv36mm8
Celera1161,631,243 - 161,748,921 (+)NCBICelera
Cytogenetic Map1H1NCBI
cM Map169.03NCBI
COP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381175,944,831 - 176,207,286 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1175,944,831 - 176,207,286 (-)EnsemblGRCh38hg38GRCh38
GRCh371175,913,967 - 176,176,422 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361174,180,590 - 174,442,993 (-)NCBINCBI36Build 36hg18NCBI36
Build 341172,645,624 - 172,908,027NCBI
Celera1149,024,694 - 149,287,018 (-)NCBICelera
Cytogenetic Map1q25.1-q25.2NCBI
HuRef1147,140,664 - 147,403,100 (-)NCBIHuRef
CHM1_11177,337,538 - 177,600,480 (-)NCBICHM1_1
T2T-CHM13v2.01175,300,159 - 175,562,553 (-)NCBIT2T-CHM13v2.0
Cop1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81373,954,058 - 74,095,283 (+)NCBIGRCr8
mRatBN7.21371,467,164 - 71,561,826 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1371,429,961 - 71,538,890 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1374,044,221 - 74,138,940 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01375,344,334 - 75,439,013 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01372,603,700 - 72,698,383 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01376,942,883 - 77,076,015 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1376,942,928 - 77,075,723 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01381,853,391 - 81,986,197 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41374,552,876 - 74,590,608 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11374,979,314 - 74,981,857 (-)NCBI
Celera1371,277,941 - 71,371,841 (+)NCBICelera
Cytogenetic Map13q22NCBI
Cop1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540615,662,546 - 15,859,306 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540615,662,546 - 15,859,306 (-)NCBIChiLan1.0ChiLan1.0
COP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2173,506,205 - 73,784,010 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1173,186,486 - 73,457,341 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01151,459,354 - 151,727,131 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11155,155,860 - 155,425,664 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1155,156,185 - 155,425,156 (-)Ensemblpanpan1.1panPan2
COP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1723,320,483 - 23,565,093 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl723,277,209 - 23,563,397 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha722,845,782 - 23,088,376 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0723,068,997 - 23,312,240 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl723,069,323 - 23,326,866 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1722,980,843 - 23,224,152 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0723,074,250 - 23,317,391 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0723,217,346 - 23,460,833 (+)NCBIUU_Cfam_GSD_1.0
Cop1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934494,415,666 - 94,590,738 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648112,262,409 - 12,437,571 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648112,262,415 - 12,437,627 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9117,915,443 - 118,114,259 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19117,913,504 - 118,114,268 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29129,664,173 - 129,764,054 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12553,057,479 - 53,316,662 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2553,057,784 - 53,314,398 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605554,611,740 - 54,870,873 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cop1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247715,922,067 - 6,133,597 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247715,922,086 - 6,132,537 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cop1
3913 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1271
Count of miRNA genes:599
Interacting mature miRNAs:698
Transcripts:ENSMUST00000076894
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
13452393Ity3b_mimmunity to S. typhimurium 3b (mouse)1156497439172097436Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
12903996Cfq5_mconditioned fear QTL 5 (mouse)1150606337159307464Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
4141075Bmd1a_mbone mineral density 1a (mouse)Not determined1155837814162145325Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
1300611Tlln_mtail length (mouse)Not determined1155837814159390372Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
13452397Leusq4_mleucocytosis susceptibility QTL 4 (mouse)1156602037170803640Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
13452394Leusq1_mleucocytosis susceptibility QTL 1 (mouse)1156602037168186402Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301232Hcs7_mhepatocarcinogenesis susceptibility 7 (mouse)Not determined1156602037168186402Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse

Markers in Region
RH136121  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,345,981 - 159,346,185UniSTSGRCm38
MGSCv371161,276,112 - 161,276,316UniSTSGRCm37
Celera1161,747,322 - 161,747,526UniSTS
Cytogenetic Map1C3UniSTS
05.MMHAP25FLB2.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,230,583 - 159,230,749UniSTSGRCm38
MGSCv371161,160,714 - 161,160,880UniSTSGRCm37
Celera1161,629,506 - 161,629,672UniSTS
Cytogenetic Map1C3UniSTS
Whitehead_YAC1 UniSTS
C87010  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,234,406 - 159,234,631UniSTSGRCm38
MGSCv371161,164,537 - 161,164,762UniSTSGRCm37
Celera1161,633,323 - 161,633,548UniSTS
Cytogenetic Map1C3UniSTS
cM Map186.6UniSTS
Whitehead/MRC_RH12032.21UniSTS
UniSTS:274185  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,293,869 - 159,294,118UniSTSGRCm38
GRCm381735,510,452 - 35,510,701UniSTSGRCm38
MGSCv371161,224,000 - 161,224,249UniSTSGRCm37
MGSCv371735,647,397 - 35,647,646UniSTSGRCm37
Celera1739,025,399 - 39,025,648UniSTS
Celera1161,694,425 - 161,694,674UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B1UniSTS
cM Map1719.23UniSTS
RH126982  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,345,186 - 159,345,428UniSTSGRCm38
MGSCv371161,275,317 - 161,275,559UniSTSGRCm37
Celera1161,746,527 - 161,746,769UniSTS
Cytogenetic Map1C3UniSTS
Whitehead/MRC_RH12024.33UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,510,452 - 35,510,700UniSTSGRCm38
GRCm381159,293,869 - 159,294,117UniSTSGRCm38
MGSCv371735,647,397 - 35,647,645UniSTSGRCm37
MGSCv371161,224,000 - 161,224,248UniSTSGRCm37
Celera1739,025,399 - 39,025,647UniSTS
Celera1161,694,425 - 161,694,673UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001360878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC084287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF151110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC158002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ070274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000076894   ⟹   ENSMUSP00000076160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,059,896 - 159,175,210 (+)Ensembl
GRCm38.p6 Ensembl1159,232,326 - 159,347,640 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192044   ⟹   ENSMUSP00000141490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,134,218 - 159,152,597 (+)Ensembl
GRCm38.p6 Ensembl1159,306,648 - 159,325,027 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192215   ⟹   ENSMUSP00000141285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,060,218 - 159,116,589 (+)Ensembl
GRCm38.p6 Ensembl1159,232,648 - 159,289,019 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192597
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,148,564 - 159,153,524 (+)Ensembl
GRCm38.p6 Ensembl1159,320,994 - 159,325,954 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192762   ⟹   ENSMUSP00000142031
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,076,818 - 159,134,168 (+)Ensembl
GRCm38.p6 Ensembl1159,249,248 - 159,306,598 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,169,926 - 159,172,670 (+)Ensembl
GRCm38.p6 Ensembl1159,342,356 - 159,345,100 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,134,207 - 159,136,655 (+)Ensembl
GRCm38.p6 Ensembl1159,306,637 - 159,309,085 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194049
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,067,131 - 159,094,556 (+)Ensembl
GRCm38.p6 Ensembl1159,239,561 - 159,266,986 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194713
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,094,304 - 159,101,302 (+)Ensembl
GRCm38.p6 Ensembl1159,266,734 - 159,273,732 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,136,005 - 159,152,676 (+)Ensembl
GRCm38.p6 Ensembl1159,308,435 - 159,325,106 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195044   ⟹   ENSMUSP00000141200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,086,238 - 159,136,059 (+)Ensembl
GRCm38.p6 Ensembl1159,258,668 - 159,308,489 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195554   ⟹   ENSMUSP00000141561
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,060,260 - 159,077,712 (+)Ensembl
GRCm38.p6 Ensembl1159,232,690 - 159,250,142 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195800   ⟹   ENSMUSP00000141941
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,059,890 - 159,077,689 (+)Ensembl
GRCm38.p6 Ensembl1159,232,320 - 159,250,119 (+)Ensembl
RefSeq Acc Id: NM_001360878   ⟹   NP_001347807
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,059,770 - 159,182,442 (+)NCBI
GRCm381159,232,200 - 159,354,872 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011931   ⟹   NP_036061
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,059,770 - 159,182,442 (+)NCBI
GRCm381159,232,200 - 159,354,872 (+)NCBI
MGSCv371161,162,457 - 161,277,711 (+)RGD
Celera1161,631,243 - 161,748,921 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496860   ⟹   XP_006496923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,059,890 - 159,182,442 (+)NCBI
GRCm381159,232,156 - 159,354,872 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254393   ⟹   XP_030110253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,059,737 - 159,182,442 (+)NCBI
GRCm381159,232,156 - 159,354,872 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254396   ⟹   XP_030110256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,059,738 - 159,182,442 (+)NCBI
GRCm381159,232,156 - 159,354,872 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254397   ⟹   XP_030110257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,060,213 - 159,182,442 (+)NCBI
GRCm381159,232,643 - 159,354,872 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942526
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,059,734 - 159,182,442 (+)NCBI
Sequence:
RefSeq Acc Id: NP_036061   ⟸   NM_011931
- Peptide Label: isoform 1
- UniProtKB: Q9R1A8 (UniProtKB/Swiss-Prot),   B2RXW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496923   ⟸   XM_006496860
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030110256   ⟸   XM_030254396
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030110253   ⟸   XM_030254393
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001347807   ⟸   NM_001360878
- Peptide Label: isoform 2
- UniProtKB: B2RXW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110257   ⟸   XM_030254397
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000076160   ⟸   ENSMUST00000076894
RefSeq Acc Id: ENSMUSP00000142031   ⟸   ENSMUST00000192762
RefSeq Acc Id: ENSMUSP00000141490   ⟸   ENSMUST00000192044
RefSeq Acc Id: ENSMUSP00000141285   ⟸   ENSMUST00000192215
RefSeq Acc Id: ENSMUSP00000141561   ⟸   ENSMUST00000195554
RefSeq Acc Id: ENSMUSP00000141941   ⟸   ENSMUST00000195800
RefSeq Acc Id: ENSMUSP00000141200   ⟸   ENSMUST00000195044
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R1A8-F1-model_v2 AlphaFold Q9R1A8 1-733 view protein structure

Promoters
RGD ID:6875394
Promoter ID:EPDNEW_M1148
Type:initiation region
Name:Cop1_1
Description:Mus musculus COP1, E3 ubiquitin ligase , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381159,232,311 - 159,232,371EPDNEW
RGD ID:6818385
Promoter ID:MM_KWN:2575
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_011931
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361161,161,951 - 161,162,451 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1347046 AgrOrtholog
Ensembl Genes ENSMUSG00000040782 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000076894 ENTREZGENE
  ENSMUST00000076894.11 UniProtKB/Swiss-Prot
  ENSMUST00000192044.2 UniProtKB/TrEMBL
  ENSMUST00000192215.6 UniProtKB/TrEMBL
  ENSMUST00000192762.6 UniProtKB/TrEMBL
  ENSMUST00000195044.2 UniProtKB/TrEMBL
  ENSMUST00000195554.6 UniProtKB/TrEMBL
  ENSMUST00000195800.6 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro COP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26374 UniProtKB/Swiss-Prot
MGD MGI:1347046 ENTREZGENE
NCBI Gene 26374 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE COP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR44080 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C3HC4_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cop1 PhenoGen
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YVP2_MOUSE UniProtKB/TrEMBL
  A0A0A6YVV7_MOUSE UniProtKB/TrEMBL
  A0A0A6YWC5_MOUSE UniProtKB/TrEMBL
  A0A0A6YWI1_MOUSE UniProtKB/TrEMBL
  A0A0A6YXD2_MOUSE UniProtKB/TrEMBL
  A0A0A6YXK6_MOUSE UniProtKB/TrEMBL
  B2RXW4 ENTREZGENE, UniProtKB/TrEMBL
  COP1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-12-12 Cop1  COP1, E3 ubiquitin ligase  Rfwd2  ring finger and WD repeat domain 2  Symbol and/or name change 5135510 APPROVED