Ubqln4 (ubiquilin 4) - Rat Genome Database

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Gene: Ubqln4 (ubiquilin 4) Mus musculus
Analyze
Symbol: Ubqln4
Name: ubiquilin 4
RGD ID: 1550028
MGI Page MGI
Description: Predicted to enable K48-linked polyubiquitin modification-dependent protein binding activity and identical protein binding activity. Predicted to be involved in several processes, including negative regulation of autophagosome maturation; negative regulation of double-strand break repair via homologous recombination; and regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within DNA repair and autophagy. Located in cytosol and endoplasmic reticulum membrane. Is expressed in several structures, including genitourinary system; heart; liver; lung; and spleen. Orthologous to human UBQLN4 (ubiquilin 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A1u; A1Up; AI663987; ataxin-1 interacting ubiquitin-like protein; ataxin-1 ubiquitin-like interacting protein; ataxin-1 ubiquitin-like-interacting protein A1U; CIP75; connexin43-interacting protein of 75 kDa; UB; UBIN; ubiquilin-4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,460,984 - 88,477,032 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,461,065 - 88,477,032 (+)EnsemblGRCm39 Ensembl
GRCm38388,553,677 - 88,569,725 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,553,758 - 88,569,725 (+)EnsemblGRCm38mm10GRCm38
MGSCv37388,357,638 - 88,373,647 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,639,643 - 88,655,652 (+)NCBIMGSCv36mm8
Celera388,593,533 - 88,609,536 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.87NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11162551   PMID:11217851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18079109   PMID:18799693   PMID:20362541   PMID:20940304   PMID:21677750   PMID:21873635   PMID:26222436   PMID:27113755   PMID:27325702   PMID:27477512  
PMID:32325033   PMID:34709266   PMID:35247097  


Genomics

Comparative Map Data
Ubqln4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,460,984 - 88,477,032 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,461,065 - 88,477,032 (+)EnsemblGRCm39 Ensembl
GRCm38388,553,677 - 88,569,725 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,553,758 - 88,569,725 (+)EnsemblGRCm38mm10GRCm38
MGSCv37388,357,638 - 88,373,647 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,639,643 - 88,655,652 (+)NCBIMGSCv36mm8
Celera388,593,533 - 88,609,536 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.87NCBI
UBQLN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,031,247 - 156,053,798 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,035,299 - 156,053,798 (-)EnsemblGRCh38hg38GRCh38
GRCh371156,005,090 - 156,023,589 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,271,716 - 154,290,140 (-)NCBINCBI36Build 36hg18NCBI36
Build 341152,818,165 - 152,836,589NCBI
Celera1129,078,055 - 129,096,477 (-)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,367,831 - 127,386,064 (-)NCBIHuRef
CHM1_11157,401,172 - 157,419,603 (-)NCBICHM1_1
T2T-CHM13v2.01155,169,709 - 155,192,264 (-)NCBIT2T-CHM13v2.0
Ubqln4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,310,524 - 176,325,724 (+)NCBIGRCr8
mRatBN7.22174,012,726 - 174,028,062 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,012,777 - 174,028,059 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,156,886 - 181,172,060 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,179,251 - 179,194,425 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,779,342 - 173,794,732 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,915,701 - 187,931,035 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,915,751 - 187,931,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,318,101 - 207,333,435 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,669,525 - 180,684,724 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,619,753 - 180,633,903 (+)NCBI
Celera2167,957,113 - 167,972,312 (+)NCBICelera
Cytogenetic Map2q34NCBI
Ubqln4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,220,548 - 2,236,646 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,218,794 - 2,236,665 (-)NCBIChiLan1.0ChiLan1.0
UBQLN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,792,457 - 93,814,703 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,524,402 - 93,545,849 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,374,635 - 131,395,986 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,209,490 - 135,225,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,209,490 - 135,225,666 (-)Ensemblpanpan1.1panPan2
UBQLN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,764,209 - 41,778,457 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,764,253 - 41,777,002 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,253,685 - 41,267,979 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,630,903 - 41,645,198 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,630,863 - 41,645,198 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,411,750 - 41,426,044 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,465,103 - 41,479,633 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,749,531 - 41,763,822 (+)NCBIUU_Cfam_GSD_1.0
Ubqln4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,269,482 - 26,285,374 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,301,389 - 5,315,756 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,299,864 - 5,316,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBQLN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,976,451 - 93,994,828 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,976,386 - 93,994,830 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,719,204 - 102,737,608 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBQLN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,811,275 - 7,829,782 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660387,107,553 - 7,127,896 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubqln4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,383,897 - 1,398,484 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,382,302 - 1,398,474 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ubqln4
493 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:518
Count of miRNA genes:384
Interacting mature miRNAs:424
Transcripts:ENSMUST00000008748
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
10043981Cia5a_mcollagen induced arthritis QTL 5a (mouse)Not determined38717045489140094Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse

Markers in Region
RH136196  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38388,569,366 - 88,569,564UniSTSGRCm38
MGSCv37388,373,288 - 88,373,486UniSTSGRCm37
Celera388,609,177 - 88,609,375UniSTS
Cytogenetic Map3F1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001411427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_033526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB040050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC145168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000008748   ⟹   ENSMUSP00000008748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,461,065 - 88,477,032 (+)Ensembl
GRCm38.p6 Ensembl388,553,758 - 88,569,725 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,464,010 - 88,471,821 (+)Ensembl
GRCm38.p6 Ensembl388,556,703 - 88,564,514 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192962   ⟹   ENSMUSP00000142145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,461,103 - 88,464,145 (+)Ensembl
GRCm38.p6 Ensembl388,553,796 - 88,556,838 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,461,071 - 88,470,867 (+)Ensembl
GRCm38.p6 Ensembl388,553,764 - 88,563,560 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,471,214 - 88,472,581 (+)Ensembl
GRCm38.p6 Ensembl388,563,907 - 88,565,274 (+)Ensembl
RefSeq Acc Id: NM_001411427   ⟹   NP_001398356
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,461,071 - 88,477,032 (+)NCBI
RefSeq Acc Id: NM_001411428   ⟹   NP_001398357
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,461,071 - 88,477,032 (+)NCBI
RefSeq Acc Id: NM_001411430   ⟹   NP_001398359
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,461,071 - 88,477,032 (+)NCBI
RefSeq Acc Id: NM_001411431   ⟹   NP_001398360
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,461,071 - 88,477,032 (+)NCBI
RefSeq Acc Id: NM_033526   ⟹   NP_277068
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,461,071 - 88,477,032 (+)NCBI
GRCm38388,553,716 - 88,569,725 (+)NCBI
MGSCv37388,357,638 - 88,373,647 (+)RGD
Celera388,593,533 - 88,609,536 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004941417
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,460,984 - 88,477,032 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_277068   ⟸   NM_033526
- Peptide Label: isoform 1
- UniProtKB: Q8BP88 (UniProtKB/Swiss-Prot),   Q99NB8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000008748   ⟸   ENSMUST00000008748
RefSeq Acc Id: ENSMUSP00000142145   ⟸   ENSMUST00000192962
RefSeq Acc Id: NP_001398357   ⟸   NM_001411428
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001398356   ⟸   NM_001411427
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001398360   ⟸   NM_001411431
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001398359   ⟸   NM_001411430
- Peptide Label: isoform 3
Protein Domains
STI1   UBA   Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99NB8-F1-model_v2 AlphaFold Q99NB8 1-596 view protein structure

Promoters
RGD ID:6834597
Promoter ID:MM_KWN:34866
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:NM_033526,   UC008PVQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,357,061 - 88,357,827 (+)MPROMDB
RGD ID:6881160
Promoter ID:EPDNEW_M4031
Type:initiation region
Name:Ubqln4_1
Description:Mus musculus ubiquilin 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38388,553,775 - 88,553,835EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2150152 AgrOrtholog
Ensembl Genes ENSMUSG00000008604 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000008748 ENTREZGENE
  ENSMUST00000008748.8 UniProtKB/Swiss-Prot
  ENSMUST00000192962.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.100 UniProtKB/Swiss-Prot
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/Swiss-Prot
InterPro STI1_HS-bd UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
  UBA-like_sf UniProtKB/Swiss-Prot
  Ubiquilin UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report mmu:94232 UniProtKB/Swiss-Prot
MGD MGI:2150152 ENTREZGENE
NCBI Gene 94232 ENTREZGENE
PANTHER UBIQUILIN UniProtKB/Swiss-Prot
  UBIQUILIN-4 UniProtKB/Swiss-Prot
Pfam UBA UniProtKB/Swiss-Prot
  ubiquitin UniProtKB/Swiss-Prot
PhenoGen Ubqln4 PhenoGen
PROSITE UBA UniProtKB/Swiss-Prot
  UBIQUITIN_2 UniProtKB/Swiss-Prot
SMART STI1 UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
  UBQ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46934 UniProtKB/Swiss-Prot
  SSF54236 UniProtKB/Swiss-Prot
UniProt A0A0A6YXU5_MOUSE UniProtKB/TrEMBL
  Q8BP88 ENTREZGENE
  Q99NB8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8BP88 UniProtKB/Swiss-Prot