AABR07033579.3 (null) - Rat Genome Database

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Gene: AABR07033579.3 (null) Rattus norvegicus
Analyze
Symbol: AABR07033579.3
Name:
RGD ID: 15014431
Description: Predicted to be involved in keratinization. Predicted to be located in intermediate filament.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1128,294,843 - 28,295,058 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1128,945,575 - 28,960,996 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

integumental system musculoskeletal system respiratory system appendage
High
Medium
Low 2 2 2
Below cutoff 1 2 2 1

Sequence

Nucleotide Sequences

RefSeq Acc Id: ENSRNOT00000061600   ⟹   ENSRNOP00000058317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1128,945,575 - 28,960,996 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090364   ⟹   ENSRNOP00000069750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1128,294,843 - 28,295,058 (+)Ensembl
Rnor_6.0 Ensembl1128,945,587 - 28,946,522 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000069750.2
RefSeq Acc Id: ENSRNOP00000058317   ⟸   ENSRNOT00000061600
RefSeq Acc Id: ENSRNOP00000069750   ⟸   ENSRNOT00000090364

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZK88-F1-model_v2 AlphaFold D3ZK88 1-82 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000061897 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000090364.2 UniProtKB/TrEMBL
InterPro KAP6 UniProtKB/TrEMBL
  KRTAP_type6/8/16/19/20/21 UniProtKB/TrEMBL
PANTHER KERATIN-ASSOCIATED PROTEIN 6-1 UniProtKB/TrEMBL
  PTHR31678 UniProtKB/TrEMBL
Pfam KRTAP UniProtKB/TrEMBL
PhenoGen AABR07033579.3 PhenoGen
RatGTEx ENSRNOG00000061897 RatGTEx
UniProt A0A0G2JW56_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07033579.3        Symbol and Name status set to provisional 45752 PROVISIONAL