AABR07060980.1 (null) - Rat Genome Database

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Gene: AABR07060980.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07060980.1
Name:
RGD ID: 15009933
Description:
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl497,585,462 - 97,586,146 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl4102,147,211 - 102,147,775 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 4 15
Low 1 4 4 2 9
Below cutoff 1 5 3 3 2 2 1 7 3 1 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000083239   ⟹   ENSRNOP00000071814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl497,585,462 - 97,586,146 (+)Ensembl
Rnor_6.0 Ensembl4102,147,211 - 102,147,775 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000071814.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000071814   ⟸   ENSRNOT00000083239
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K1F0-F1-model_v2 AlphaFold A0A0G2K1F0 1-121 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000056052 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083239.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
PANTHER IG KAPPA CHAIN V-V REGIONS-RELATED UniProtKB/TrEMBL
  IMMUNOGLOBULIN LIGHT CHAIN UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen AABR07060980.1 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000056052 RatGTEx
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0G2K1F0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07060980.1        Symbol and Name status set to provisional 45752 PROVISIONAL