AABR07006049.1 (null) - Rat Genome Database

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Pathways
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Gene: AABR07006049.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07006049.1
Name:
RGD ID: 15005087
Description:
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1197,254,956 - 197,356,066 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1215,057,617 - 215,423,099 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:26
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000042047, ENSRNOT00000068147
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system integumental system musculoskeletal system reproductive system respiratory system appendage
High
Medium
Low 6
Below cutoff 1 2 4 2 2 1 4 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000027259   ⟹   ENSRNOP00000027259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,329,668 - 215,423,099 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000042047   ⟹   ENSRNOP00000042552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1197,254,956 - 197,320,235 (-)Ensembl
Rnor_6.0 Ensembl1215,329,806 - 215,330,492 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000064050   ⟹   ENSRNOP00000063635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,329,668 - 215,350,161 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000068147   ⟹   ENSRNOP00000060547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1197,307,096 - 197,356,066 (-)Ensembl
Rnor_6.0 Ensembl1215,057,677 - 215,330,492 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081144   ⟹   ENSRNOP00000073310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,057,617 - 215,350,161 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000042552.5
  ENSRNOP00000060547.4
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000042552   ⟸   ENSRNOT00000042047
RefSeq Acc Id: ENSRNOP00000073310   ⟸   ENSRNOT00000081144
RefSeq Acc Id: ENSRNOP00000060547   ⟸   ENSRNOT00000068147
RefSeq Acc Id: ENSRNOP00000027259   ⟸   ENSRNOT00000027259
RefSeq Acc Id: ENSRNOP00000063635   ⟸   ENSRNOT00000064050

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K565-F1-model_v2 AlphaFold A0A0G2K565 1-372 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000046649 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042047.5 UniProtKB/TrEMBL
  ENSRNOT00000068147.4 UniProtKB/TrEMBL
PhenoGen AABR07006049.1 PhenoGen
RatGTEx ENSRNOG00000046649 RatGTEx
UniProt F1LXZ0_RAT UniProtKB/TrEMBL
  F1M4R9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07006049.1        Symbol and Name status set to provisional 45752 PROVISIONAL