AABR07018323.1 (null) - Rat Genome Database

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Gene: AABR07018323.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07018323.1
Name:
RGD ID: 15004308
Description: Predicted to enable TRAIL binding activity.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1551,433,859 - 51,463,718 (+)EnsemblRnor6.0rn6Rnor6.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 16 4 4 4 6 12 24
Low 3 22 47 37 13 37 4 5 59 23 17 11 4
Below cutoff 5 6 6 4 6 9 4

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066128   ⟹   ENSRNOP00000063335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1544,840,386 - 44,867,467 (+)Ensembl
Rnor_6.0 Ensembl1551,452,727 - 51,463,718 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077758   ⟹   ENSRNOP00000071012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1544,840,591 - 44,866,421 (+)Ensembl
Rnor_6.0 Ensembl1551,434,096 - 51,463,158 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093234   ⟹   ENSRNOP00000076261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1544,842,732 - 44,866,421 (+)Ensembl
Rnor_6.0 Ensembl1551,433,859 - 51,439,633 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000063335.5
  ENSRNOP00000076261.2
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000071012   ⟸   ENSRNOT00000077758
RefSeq Acc Id: ENSRNOP00000063335   ⟸   ENSRNOT00000066128
RefSeq Acc Id: ENSRNOP00000076261   ⟸   ENSRNOT00000093234
Protein Domains
Death   TNFR-Cys

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000038483 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066128.5 UniProtKB/TrEMBL
  ENSRNOT00000093234.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro DEATH-like_dom_sf UniProtKB/TrEMBL
  Death_domain UniProtKB/TrEMBL
  TNFR/NGFR_Cys_rich_reg UniProtKB/TrEMBL
  TNFR_10 UniProtKB/TrEMBL
  TNFRSF10_N UniProtKB/TrEMBL
  TNFRSF10A/B_death UniProtKB/TrEMBL
KEGG Report rno:364420 UniProtKB/TrEMBL
PANTHER TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10A UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10B UniProtKB/TrEMBL
Pfam Death UniProtKB/TrEMBL
  TNFR_c6 UniProtKB/TrEMBL
PhenoGen AABR07018323.1 PhenoGen
PRINTS TNFACTORR10 UniProtKB/TrEMBL
PROSITE DEATH_DOMAIN UniProtKB/TrEMBL
  TNFR_NGFR_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000038483 RatGTEx
SMART DEATH UniProtKB/TrEMBL
  TNFR UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
  TNF receptor-like UniProtKB/TrEMBL
UniProt A0A1W2Q6I0_RAT UniProtKB/TrEMBL
  D3ZYZ1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07018323.1        Symbol and Name status set to provisional 45752 PROVISIONAL