CXCL16 (C-X-C motif chemokine ligand 16) - Rat Genome Database

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Gene: CXCL16 (C-X-C motif chemokine ligand 16) Sus scrofa
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Symbol: CXCL16
Name: C-X-C motif chemokine ligand 16
RGD ID: 14277602
Description: ENCODES a protein that exhibits chemokine receptor binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); response to cytokine (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); systemic scleroderma (ortholog); FOUND IN extracellular space (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C-X-C motif chemokine 16; scavenger receptor for phosphatidylserine and oxidized low density lipoprotein; SR-PSOX; Transmembrane chemokine CXCL16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11252,145,100 - 52,150,267 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,264,331 - 54,269,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
extracellular space  (IBA,IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:11060282   PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
CXCL16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11252,145,100 - 52,150,267 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,264,331 - 54,269,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CXCL16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,733,533 - 4,739,928 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,733,533 - 4,739,928 (-)EnsemblGRCh38hg38GRCh38
GRCh37174,636,828 - 4,643,223 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,583,577 - 4,589,972 (-)NCBINCBI36Build 36hg18NCBI36
Build 34174,583,583 - 4,589,863NCBI
Celera174,652,030 - 4,658,426 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,525,914 - 4,531,582 (-)NCBIHuRef
CHM1_1174,645,559 - 4,651,953 (-)NCBICHM1_1
T2T-CHM13v2.0174,623,202 - 4,629,598 (-)NCBIT2T-CHM13v2.0
Cxcl16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,345,215 - 70,350,810 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,344,809 - 70,350,810 (-)EnsemblGRCm39 Ensembl
GRCm381170,454,389 - 70,459,984 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,453,983 - 70,459,984 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,267,736 - 70,273,486 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,270,429 - 70,276,179 (-)NCBIMGSCv36mm8
Celera1178,000,199 - 78,005,953 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
Cxcl16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,665,355 - 55,669,950 (-)NCBIGRCr8
mRatBN7.21055,166,721 - 55,171,316 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,166,723 - 55,171,592 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,845,644 - 59,850,516 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,334,153 - 59,339,026 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,833,353 - 54,838,107 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,060,005 - 57,064,600 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,060,007 - 57,064,600 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,817,242 - 56,821,837 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,296,126 - 57,300,721 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1054,313,016 - 54,317,611 (-)NCBICelera
Cytogenetic Map10q24NCBI
Cxcl16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546710,132,461 - 10,136,649 (-)NCBIChiLan1.0ChiLan1.0
CXCL16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,351,100 - 12,357,230 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,319,363 - 14,325,829 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,789,280 - 4,795,656 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,778,717 - 4,785,639 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,778,717 - 4,785,639 (-)Ensemblpanpan1.1panPan2
CXCL16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,816,889 - 31,820,975 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,816,667 - 31,820,840 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,955,979 - 31,960,601 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,921,756 - 31,926,380 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1531,888,075 - 31,892,688 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,847,757 - 31,852,370 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,023,989 - 32,028,615 (+)NCBIUU_Cfam_GSD_1.0
Cxcl16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560252,738,369 - 52,743,825 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366773,157,144 - 3,163,210 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366773,157,173 - 3,162,599 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXCL16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,214,823 - 4,220,339 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,211,621 - 4,219,789 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,420,672 - 17,426,403 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cxcl16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247868,589,687 - 8,594,059 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CXCL16
114 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


RefSeq Acc Id: NM_213811   ⟹   NP_998976
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,146,193 - 52,150,020 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005669174   ⟹   XP_005669231
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,145,585 - 52,150,267 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013981276   ⟹   XP_013836730
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,145,100 - 52,150,267 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013836730   ⟸   XM_013981276
- Peptide Label: isoform X1
- UniProtKB: A0A8D0ZDM9 (UniProtKB/TrEMBL),   A0A8D0U0M9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005669231   ⟸   XM_005669174
- Peptide Label: isoform X2
- UniProtKB: A0A8D0K073 (UniProtKB/TrEMBL),   K7GNB5 (UniProtKB/TrEMBL),   K7GPV8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_998976   ⟸   NM_213811
- Peptide Label: precursor
- UniProtKB: Q9GKE2 (UniProtKB/Swiss-Prot),   A0A0B8RTT4 (UniProtKB/TrEMBL),   A0A8D1CR44 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
C-X-C motif chemokine


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017920 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005031770 UniProtKB/TrEMBL
  ENSSSCG00015030203 UniProtKB/TrEMBL
  ENSSSCG00025008424 UniProtKB/Swiss-Prot
  ENSSSCG00035027027 UniProtKB/TrEMBL
  ENSSSCG00045028497 UniProtKB/Swiss-Prot
  ENSSSCG00055025229 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000032974 ENTREZGENE
  ENSSSCT00000032974.4 UniProtKB/TrEMBL
  ENSSSCT00005050738.1 UniProtKB/TrEMBL
  ENSSSCT00015040041.1 UniProtKB/TrEMBL
  ENSSSCT00025011216.1 UniProtKB/Swiss-Prot
  ENSSSCT00035035683.1 UniProtKB/TrEMBL
  ENSSSCT00035035692.1 UniProtKB/TrEMBL
  ENSSSCT00045048794.1 UniProtKB/Swiss-Prot
  ENSSSCT00055050019.1 UniProtKB/Swiss-Prot
InterPro CXCL16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CXCL16_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:396735 UniProtKB/Swiss-Prot
NCBI Gene CXCL16 ENTREZGENE
PANTHER C-X-C MOTIF CHEMOKINE 16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14385 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CXCL16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0B8RTT4 ENTREZGENE
  A0A8D0K073 ENTREZGENE
  A0A8D0U0M9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZDM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CR44 ENTREZGENE, UniProtKB/TrEMBL
  CXL16_PIG UniProtKB/Swiss-Prot
  K7GNB5 ENTREZGENE
  K7GPV8 ENTREZGENE, UniProtKB/TrEMBL
  Q9GKE2 ENTREZGENE
UniProt Secondary A0A8D0K073 UniProtKB/TrEMBL
  K7GNB5 UniProtKB/TrEMBL
VGNC ID VGNC:97955 ENTREZGENE