CDC42EP4 (CDC42 effector protein 4) - Rat Genome Database

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Gene: CDC42EP4 (CDC42 effector protein 4) Sus scrofa
Analyze
Symbol: CDC42EP4
Name: CDC42 effector protein 4
RGD ID: 14259032
Description: INVOLVED IN cellular response to type II interferon (ortholog); Rho protein signal transduction (ortholog); FOUND IN actin cytoskeleton (inferred); adherens junction (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,638,085 - 7,660,186 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1127,637,797 - 7,660,189 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2127,918,360 - 7,940,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CDC42EP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,638,085 - 7,660,186 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1127,637,797 - 7,660,189 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2127,918,360 - 7,940,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDC42EP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381773,283,624 - 73,312,001 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1773,283,624 - 73,312,005 (-)EnsemblGRCh38hg38GRCh38
GRCh371771,279,763 - 71,308,140 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361768,791,358 - 68,819,738 (-)NCBINCBI36Build 36hg18NCBI36
Build 341768,791,358 - 68,819,738NCBI
Celera1767,862,911 - 67,891,275 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1766,689,114 - 66,717,308 (-)NCBIHuRef
CHM1_11771,343,840 - 71,373,048 (-)NCBICHM1_1
T2T-CHM13v2.01774,173,348 - 74,201,822 (-)NCBIT2T-CHM13v2.0
Cdc42ep4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911113,617,676 - 113,643,369 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11113,617,676 - 113,642,707 (-)EnsemblGRCm39 Ensembl
GRCm3811113,726,850 - 113,752,543 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11113,726,850 - 113,751,881 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711113,588,164 - 113,613,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611113,542,940 - 113,567,408 (-)NCBIMGSCv36mm8
Celera11125,491,736 - 125,518,895 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1179.22NCBI
Cdc42ep4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81099,271,750 - 99,298,551 (-)NCBIGRCr8
mRatBN7.21098,772,613 - 98,797,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1098,772,495 - 98,797,695 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10103,830,115 - 103,854,700 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010103,293,171 - 103,317,759 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01098,692,638 - 98,717,232 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010102,244,680 - 102,269,272 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10102,244,681 - 102,269,272 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010101,923,476 - 101,947,679 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410103,365,895 - 103,390,663 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110103,380,264 - 103,405,048 (-)NCBI
Celera1097,379,485 - 97,404,067 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Cdc42ep4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955553313,376 - 314,422 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955553311,725 - 335,125 (-)NCBIChiLan1.0ChiLan1.0
CDC42EP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21989,301,929 - 89,329,228 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11794,126,841 - 94,154,118 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01767,212,571 - 67,239,844 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11772,666,941 - 72,797,808 (-)NCBIpanpan1.1PanPan1.1panPan2
CDC42EP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,888,183 - 6,909,986 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl96,907,205 - 6,964,626 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha97,507,773 - 7,529,595 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.097,559,010 - 7,580,823 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl97,578,145 - 7,579,175 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.197,599,505 - 7,621,303 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.097,702,392 - 7,724,167 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.097,763,144 - 7,784,960 (+)NCBIUU_Cfam_GSD_1.0
Cdc42ep4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056027,445,938 - 7,465,090 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655961,017 - 962,084 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936655943,754 - 963,018 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC42EP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11648,331,092 - 48,358,301 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1648,355,463 - 48,356,533 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607719,151,097 - 19,179,345 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc42ep4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248013,372,778 - 3,394,855 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDC42EP4
882 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000018774   ⟹   ENSSSCP00000018272
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl127,638,085 - 7,660,186 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000058168   ⟹   ENSSSCP00000052917
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl127,638,985 - 7,660,186 (+)Ensembl
RefSeq Acc Id: XM_003131243   ⟹   XP_003131291
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1127,637,797 - 7,660,188 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003357994   ⟹   XP_003358042
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1127,638,978 - 7,660,189 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003131291   ⟸   XM_003131243
- UniProtKB: F1RV35 (UniProtKB/TrEMBL),   A0A4X1SKS7 (UniProtKB/TrEMBL),   A0A8D1CAB0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003358042   ⟸   XM_003357994
- UniProtKB: F1RV35 (UniProtKB/TrEMBL),   A0A4X1SKS7 (UniProtKB/TrEMBL),   A0A8D1CAB0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000052917   ⟸   ENSSSCT00000058168
Ensembl Acc Id: ENSSSCP00000018272   ⟸   ENSSSCT00000018774
Protein Domains
CRIB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017245 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025063482 UniProtKB/TrEMBL
  ENSSSCG00030047017 UniProtKB/TrEMBL
  ENSSSCG00035010302 UniProtKB/TrEMBL
  ENSSSCG00040018583 UniProtKB/TrEMBL
  ENSSSCG00045020765 UniProtKB/TrEMBL
  ENSSSCG00050057095 UniProtKB/TrEMBL
  ENSSSCG00055012177 UniProtKB/TrEMBL
  ENSSSCG00060075299 UniProtKB/TrEMBL
  ENSSSCG00065074509 UniProtKB/TrEMBL
  ENSSSCG00070001955 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018774 ENTREZGENE
  ENSSSCT00000018774.4 UniProtKB/TrEMBL
  ENSSSCT00000058168 ENTREZGENE
  ENSSSCT00000058168.3 UniProtKB/TrEMBL
  ENSSSCT00025086928.1 UniProtKB/TrEMBL
  ENSSSCT00025086982.1 UniProtKB/TrEMBL
  ENSSSCT00030065572.1 UniProtKB/TrEMBL
  ENSSSCT00030065581.1 UniProtKB/TrEMBL
  ENSSSCT00035012882.1 UniProtKB/TrEMBL
  ENSSSCT00035012885.1 UniProtKB/TrEMBL
  ENSSSCT00040025098.1 UniProtKB/TrEMBL
  ENSSSCT00040025110.1 UniProtKB/TrEMBL
  ENSSSCT00045035391.1 UniProtKB/TrEMBL
  ENSSSCT00045035411.1 UniProtKB/TrEMBL
  ENSSSCT00050077822.1 UniProtKB/TrEMBL
  ENSSSCT00050077829.1 UniProtKB/TrEMBL
  ENSSSCT00055023822.1 UniProtKB/TrEMBL
  ENSSSCT00055023842.1 UniProtKB/TrEMBL
  ENSSSCT00060103037.1 UniProtKB/TrEMBL
  ENSSSCT00060103056.1 UniProtKB/TrEMBL
  ENSSSCT00065102629.1 UniProtKB/TrEMBL
  ENSSSCT00065102638.1 UniProtKB/TrEMBL
  ENSSSCT00070003640.1 UniProtKB/TrEMBL
  ENSSSCT00070003648.1 UniProtKB/TrEMBL
InterPro Cdc42_effect UniProtKB/TrEMBL
  Cdc42_Effector_BORG/CEP UniProtKB/TrEMBL
  CRIB_dom UniProtKB/TrEMBL
KEGG Report ssc:100517117 UniProtKB/TrEMBL
NCBI Gene CDC42EP4 ENTREZGENE
PANTHER CDC42 EFFECTOR PROTEIN 4 UniProtKB/TrEMBL
  CDC42 EFFECTOR PROTEIN BORG UniProtKB/TrEMBL
Pfam BORG_CEP UniProtKB/TrEMBL
  PBD UniProtKB/TrEMBL
PROSITE CRIB UniProtKB/TrEMBL
SMART PBD UniProtKB/TrEMBL
UniProt A0A4X1SKS7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CAB0 ENTREZGENE, UniProtKB/TrEMBL
  F1RV35 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86458 ENTREZGENE