LOC100515857 (C-C motif chemokine 3) - Rat Genome Database

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Gene: LOC100515857 (C-C motif chemokine 3) Sus scrofa
Analyze
Symbol: LOC100515857
Name: C-C motif chemokine 3
RGD ID: 13943568
Description: ENCODES a protein that exhibits chemokine activity (inferred); cytokine activity (inferred); peptidase inhibitor activity (inferred); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); ASSOCIATED WITH chromosome 17q12 deletion syndrome (ortholog); Lung Neoplasms (ortholog); Neoplastic Cell Transformation (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11239,521,649 - 39,575,970 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,091,117 - 41,145,423 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100515857
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11239,521,649 - 39,575,970 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,091,117 - 41,145,423 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCL18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381736,064,272 - 36,072,032 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1736,064,272 - 36,072,032 (+)EnsemblGRCh38hg38GRCh38
GRCh371734,391,632 - 34,399,392 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361731,415,756 - 31,422,954 (+)NCBINCBI36Build 36hg18NCBI36
Build 341731,415,755 - 31,422,953NCBI
Celera1731,301,196 - 31,308,394 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,576,192 - 30,583,390 (+)NCBIHuRef
CHM1_11734,455,854 - 34,463,052 (+)NCBICHM1_1
T2T-CHM13v2.01737,012,176 - 37,019,935 (+)NCBIT2T-CHM13v2.0
CCL18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,404,748 - 28,418,008 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,283,698 - 30,296,959 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,723,413 - 20,730,633 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,019,868 - 21,027,070 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1721,019,868 - 21,027,070 (-)Ensemblpanpan1.1panPan2
CCL18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11629,538,329 - 29,546,283 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1629,538,740 - 29,546,291 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666075428,874 - 436,424 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC100515857
3322 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003131711   ⟹   XP_003131759
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11239,521,649 - 39,575,970 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003131759 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00005005923.1
  ENSSSCP00030031415.1
  ENSSSCP00035044257.1
  ENSSSCP00045015836.1
  ENSSSCP00050044877.1
  ENSSSCP00055033138.1
  ENSSSCP00070010172.1
Reference Protein Sequences
RefSeq Acc Id: XP_003131759   ⟸   XM_003131711
- UniProtKB: A0A4X1T5L8 (UniProtKB/TrEMBL),   A0A8D1HG15 (UniProtKB/TrEMBL),   A0A8D1P0R6 (UniProtKB/TrEMBL),   A0A8D0IAQ1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Chemokine interleukin-8-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00005006688 UniProtKB/TrEMBL
  ENSSSCG00030049268 UniProtKB/TrEMBL
  ENSSSCG00035076032 UniProtKB/TrEMBL
  ENSSSCG00045013439 UniProtKB/TrEMBL
  ENSSSCG00050075080 UniProtKB/TrEMBL
  ENSSSCG00055021130 UniProtKB/TrEMBL
  ENSSSCG00070006477 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00005010084.1 UniProtKB/TrEMBL
  ENSSSCT00030068778.1 UniProtKB/TrEMBL
  ENSSSCT00035103442.1 UniProtKB/TrEMBL
  ENSSSCT00045022954.1 UniProtKB/TrEMBL
  ENSSSCT00050102866.1 UniProtKB/TrEMBL
  ENSSSCT00055041618.1 UniProtKB/TrEMBL
  ENSSSCT00070012368.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
  4.10.75.10 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_CC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Elafin-like_sf UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
  WAP_dom UniProtKB/TrEMBL
KEGG Report ssc:100515857 UniProtKB/TrEMBL
NCBI Gene LOC100515857 ENTREZGENE
PANTHER C-C MOTIF CHEMOKINE 3 UniProtKB/TrEMBL
  PTHR12015 UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
  WAP UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CC UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt A0A4X1T5L8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IAQ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HG15 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1P0R6 ENTREZGENE, UniProtKB/TrEMBL