H2BC8 (H2B clustered histone 8) - Rat Genome Database

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Gene: H2BC8 (H2B clustered histone 8) Sus scrofa
Analyze
Symbol: H2BC8 (Ensembl: H2BC7)
Name: H2B clustered histone 8 (Ensembl:H2B clustered histone 7)
RGD ID: 13920341
Description: ENCODES a protein that exhibits DNA binding (inferred); identical protein binding (inferred); protein heterodimerization activity (inferred); INVOLVED IN antibacterial humoral response (inferred); antimicrobial humoral immune response mediated by antimicrobial peptide (inferred); defense response to Gram-positive bacterium (inferred); FOUND IN chromosome (inferred); cytosol (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H2B type 1; LOC100156937
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,897,823 - 20,898,203 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,862,784 - 20,863,395 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2722,089,249 - 22,089,867 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in H2BC8
62 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000028428   ⟹   ENSSSCP00000021067
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl720,897,823 - 20,898,203 (+)Ensembl
RefSeq Acc Id: XM_001927717   ⟹   XP_001927752
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1720,862,784 - 20,863,395 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_001927752   ⟸   XM_001927717
- UniProtKB: I3LAJ9 (UniProtKB/TrEMBL),   A0A4X1VJL1 (UniProtKB/TrEMBL),   A0A480K1G1 (UniProtKB/TrEMBL),   A0A8D0X504 (UniProtKB/TrEMBL),   A0A8D1SZF9 (UniProtKB/TrEMBL),   A0A8D1RZK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000021067   ⟸   ENSSSCT00000028428
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000049262 Ensembl
  ENSSSCG00000055820 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00000056711 UniProtKB/TrEMBL
  ENSSSCG00005035159 UniProtKB/TrEMBL
  ENSSSCG00005042344 UniProtKB/TrEMBL
  ENSSSCG00005042506 UniProtKB/TrEMBL
  ENSSSCG00015055395 UniProtKB/TrEMBL
  ENSSSCG00015055568 UniProtKB/TrEMBL
  ENSSSCG00015060417 UniProtKB/TrEMBL
  ENSSSCG00025020158 UniProtKB/TrEMBL
  ENSSSCG00025038538 UniProtKB/TrEMBL
  ENSSSCG00030047979 UniProtKB/TrEMBL
  ENSSSCG00035077083 UniProtKB/TrEMBL
  ENSSSCG00040048073 UniProtKB/TrEMBL
  ENSSSCG00045001994 UniProtKB/TrEMBL
  ENSSSCG00045002352 UniProtKB/TrEMBL
  ENSSSCG00050046933 UniProtKB/TrEMBL
  ENSSSCG00050047909 UniProtKB/TrEMBL
  ENSSSCG00055026062 UniProtKB/TrEMBL
  ENSSSCG00055026237 UniProtKB/TrEMBL
  ENSSSCG00060011260 UniProtKB/TrEMBL
  ENSSSCG00060013614 UniProtKB/TrEMBL
  ENSSSCG00070024938 UniProtKB/TrEMBL
  ENSSSCG00070024959 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028428.4 UniProtKB/TrEMBL
  ENSSSCT00000105027.1 UniProtKB/TrEMBL
  ENSSSCT00005056128.1 UniProtKB/TrEMBL
  ENSSSCT00005067881.1 UniProtKB/TrEMBL
  ENSSSCT00005068162.1 UniProtKB/TrEMBL
  ENSSSCT00015073805.1 UniProtKB/TrEMBL
  ENSSSCT00015074039.1 UniProtKB/TrEMBL
  ENSSSCT00015080750.1 UniProtKB/TrEMBL
  ENSSSCT00025027480.1 UniProtKB/TrEMBL
  ENSSSCT00025052379.1 UniProtKB/TrEMBL
  ENSSSCT00030066996.1 UniProtKB/TrEMBL
  ENSSSCT00035104991.1 UniProtKB/TrEMBL
  ENSSSCT00040064750.1 UniProtKB/TrEMBL
  ENSSSCT00045003094.1 UniProtKB/TrEMBL
  ENSSSCT00045003671.1 UniProtKB/TrEMBL
  ENSSSCT00050063898.1 UniProtKB/TrEMBL
  ENSSSCT00050065271.1 UniProtKB/TrEMBL
  ENSSSCT00055051466.1 UniProtKB/TrEMBL
  ENSSSCT00055051968.1 UniProtKB/TrEMBL
  ENSSSCT00060014684.1 UniProtKB/TrEMBL
  ENSSSCT00060017934.1 UniProtKB/TrEMBL
  ENSSSCT00070049816.1 UniProtKB/TrEMBL
  ENSSSCT00070049861.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
KEGG Report ssc:100156932 UniProtKB/TrEMBL
  ssc:100156937 UniProtKB/TrEMBL
NCBI Gene LOC100156937 ENTREZGENE
PANTHER HISTONE H2B TYPE 1-J UniProtKB/TrEMBL
  PTHR23428 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2B UniProtKB/TrEMBL
PROSITE HISTONE_H2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A480K1G1 ENTREZGENE
  A0A4X1VJL1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0X504 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RZK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SZF9 ENTREZGENE, UniProtKB/TrEMBL
  I3LAJ9 ENTREZGENE
UniProt Secondary A0A480K1G1 UniProtKB/TrEMBL
  I3LAJ9 UniProtKB/TrEMBL
VGNC ID VGNC:109817 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 H2BC8  H2B clustered histone 8  LOC100156937  histone H2B type 1  Symbol and/or name change 19259463 PROVISIONAL