H2BC8 (H2B clustered histone 8) - Rat Genome Database

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Gene: H2BC8 (H2B clustered histone 8) Sus scrofa
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Symbol: H2BC8 (Ensembl: H2BC7)
Name: H2B clustered histone 8 (Ensembl:H2B clustered histone 7)
RGD ID: 13920341
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); FOUND IN chromosome (inferred); nucleoplasm (inferred); nucleosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H2B type 1; LOC100156937
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,897,823 - 20,898,203 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,862,784 - 20,863,395 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2722,089,249 - 22,089,867 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
nucleoplasm  (IEA)
nucleosome  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in H2BC8
62 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSSCT00000028428   ⟹   ENSSSCP00000021067
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl720,897,823 - 20,898,203 (+)Ensembl
RefSeq Acc Id: XM_001927717   ⟹   XP_001927752
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1720,862,784 - 20,863,395 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001927752   ⟸   XM_001927717
- UniProtKB: I3LAJ9 (UniProtKB/TrEMBL),   A0A4X1VJL1 (UniProtKB/TrEMBL),   A0A480K1G1 (UniProtKB/TrEMBL),   A0A8D0X504 (UniProtKB/TrEMBL),   A0A8D1SZF9 (UniProtKB/TrEMBL),   A0A8D1RZK9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000021067   ⟸   ENSSSCT00000028428
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000049262 Ensembl
  ENSSSCG00000055820 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00000056711 UniProtKB/TrEMBL
  ENSSSCG00005035159 UniProtKB/TrEMBL
  ENSSSCG00005042344 UniProtKB/TrEMBL
  ENSSSCG00005042506 UniProtKB/TrEMBL
  ENSSSCG00015055395 UniProtKB/TrEMBL
  ENSSSCG00015055568 UniProtKB/TrEMBL
  ENSSSCG00015060417 UniProtKB/TrEMBL
  ENSSSCG00025020158 UniProtKB/TrEMBL
  ENSSSCG00025038538 UniProtKB/TrEMBL
  ENSSSCG00030047979 UniProtKB/TrEMBL
  ENSSSCG00035077083 UniProtKB/TrEMBL
  ENSSSCG00040048073 UniProtKB/TrEMBL
  ENSSSCG00045001994 UniProtKB/TrEMBL
  ENSSSCG00045002352 UniProtKB/TrEMBL
  ENSSSCG00050046933 UniProtKB/TrEMBL
  ENSSSCG00050047909 UniProtKB/TrEMBL
  ENSSSCG00055026062 UniProtKB/TrEMBL
  ENSSSCG00055026237 UniProtKB/TrEMBL
  ENSSSCG00060011260 UniProtKB/TrEMBL
  ENSSSCG00060013614 UniProtKB/TrEMBL
  ENSSSCG00070024938 UniProtKB/TrEMBL
  ENSSSCG00070024959 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028428.4 UniProtKB/TrEMBL
  ENSSSCT00000105027.1 UniProtKB/TrEMBL
  ENSSSCT00005056128.1 UniProtKB/TrEMBL
  ENSSSCT00005067881.1 UniProtKB/TrEMBL
  ENSSSCT00005068162.1 UniProtKB/TrEMBL
  ENSSSCT00015073805.1 UniProtKB/TrEMBL
  ENSSSCT00015074039.1 UniProtKB/TrEMBL
  ENSSSCT00015080750.1 UniProtKB/TrEMBL
  ENSSSCT00025027480.1 UniProtKB/TrEMBL
  ENSSSCT00025052379.1 UniProtKB/TrEMBL
  ENSSSCT00030066996.1 UniProtKB/TrEMBL
  ENSSSCT00035104991.1 UniProtKB/TrEMBL
  ENSSSCT00040064750.1 UniProtKB/TrEMBL
  ENSSSCT00045003094.1 UniProtKB/TrEMBL
  ENSSSCT00045003671.1 UniProtKB/TrEMBL
  ENSSSCT00050063898.1 UniProtKB/TrEMBL
  ENSSSCT00050065271.1 UniProtKB/TrEMBL
  ENSSSCT00055051466.1 UniProtKB/TrEMBL
  ENSSSCT00055051968.1 UniProtKB/TrEMBL
  ENSSSCT00060014684.1 UniProtKB/TrEMBL
  ENSSSCT00060017934.1 UniProtKB/TrEMBL
  ENSSSCT00070049816.1 UniProtKB/TrEMBL
  ENSSSCT00070049861.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
KEGG Report ssc:100156932 UniProtKB/TrEMBL
  ssc:100156937 UniProtKB/TrEMBL
NCBI Gene LOC100156937 ENTREZGENE
PANTHER HISTONE H2B TYPE 1-J UniProtKB/TrEMBL
  PTHR23428 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2B UniProtKB/TrEMBL
PROSITE HISTONE_H2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A480K1G1 ENTREZGENE
  A0A4X1VJL1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0X504 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RZK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SZF9 ENTREZGENE, UniProtKB/TrEMBL
  I3LAJ9 ENTREZGENE
UniProt Secondary A0A480K1G1 UniProtKB/TrEMBL
  I3LAJ9 UniProtKB/TrEMBL
VGNC ID VGNC:109817 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 H2BC8  H2B clustered histone 8  LOC100156937  histone H2B type 1  Symbol and/or name change 19259463 PROVISIONAL