Git2 (GIT ArfGAP 2) - Rat Genome Database

Name: Git2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Git2 (GIT ArfGAP 2) Rattus norvegicus

Analyze

Symbol:

Git2

Name:

GIT ArfGAP 2

RGD ID:

1359708

Description:

Predicted to enable GTPase activator activity and small GTPase binding activity. Predicted to be involved in several processes, including modulation of chemical synaptic transmission; regulation of signal transduction; and synaptic vesicle recycling. Predicted to act upstream of or within behavioral response to pain. Predicted to be located in nucleoplasm and presynapse. Predicted to be active in calyx of Held. Orthologous to human GIT2 (GIT ArfGAP 2); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,4,6-trinitrotoluene; 2,6-dinitrotoluene; atrazine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ARF GAP GIT2; ARF GTPase-activating protein GIT2; CAT-2; CAT2; cool-interacting tyrosine-phosphorylated protein 2; G protein-coupled receptor kinase interacting ArfGAP 2; G protein-coupled receptor kinase-interactor 2; GRK-interacting protein 2; MGC94099; similar to Git2 protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GIT2 (GIT ArfGAP 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Git2 (GIT ArfGAP 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Git2 (GIT ArfGAP 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GIT2 (GIT ArfGAP 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GIT2 (GIT ArfGAP 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Git2 (GIT ArfGAP 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GIT2 (GIT ArfGAP 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GIT2 (GIT ArfGAP 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Git2 (GIT ArfGAP 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GIT2 (GIT ArfGAP 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Git2 (GIT ArfGAP 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	git2a (G protein-coupled receptor kinase interacting ArfGAP 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	git2b (G protein-coupled receptor kinase interacting ArfGAP 2b)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	git-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Git	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	git2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	47,490,350 - 47,531,232 (+)	NCBI		GRCr8
mRatBN7.2	12	41,829,717 - 41,872,621 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	41,829,730 - 41,871,097 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	42,997,345 - 43,038,116 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	43,610,923 - 43,651,694 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	42,671,415 - 42,712,186 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	47,590,110 - 47,630,991 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	47,590,154 - 47,631,119 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	49,383,645 - 49,424,284 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	43,117,706 - 43,158,710 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	42,981,093 - 43,022,097 (+)	NCBI
Celera	12	43,445,286 - 43,486,291 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

inflammatory bowel disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(2,4,5-trichlorophenoxy)acetic acid (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,6-trinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsenous acid (ISO)

atrazine (EXP,ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

camptothecin (ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP,ISO)

coumarin (ISO)

diarsenic trioxide (ISO)

diclofenac (ISO)

dorsomorphin (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

glyphosate (EXP)

imidacloprid (EXP)

lead(0) (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

Soman (EXP)

tamoxifen (ISO)

thiabendazole (EXP)

thimerosal (ISO)

torcetrapib (ISO)

trichostatin A (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

behavioral response to pain (ISO)

brain development (IBA,IEA)

presynaptic modulation of chemical synaptic transmission (ISO)

regulation of ARF protein signal transduction (IBA,IEA)

regulation of G protein-coupled receptor signaling pathway (IBA,IEA)

regulation of synaptic vesicle exocytosis (ISO)

synaptic vesicle recycling (IBA,IEA)

Cellular Component

calyx of Held (ISO)

nucleoplasm (IEA,ISO)

presynapse (ISO)

synapse (IBA,IEA)

Molecular Function

GTPase activator activity (IBA,IEA)

metal ion binding (IEA)

protein binding (ISO)

protein-containing complex binding (ISO)

small GTPase binding (IBA,IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

endocytosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	A tyrosine-phosphorylated protein that binds to an important regulatory region on the cool family of p21-activated kinase-binding proteins.	Bagrodia S, etal., J Biol Chem 1999 Aug 6;274(32):22393-400.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:10942595	PMID:17310244	PMID:19912111	PMID:21423176	PMID:22606319	PMID:23870131	PMID:26637799

Genomics

Comparative Map Data

Git2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	47,490,350 - 47,531,232 (+)	NCBI		GRCr8
mRatBN7.2	12	41,829,717 - 41,872,621 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	41,829,730 - 41,871,097 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	42,997,345 - 43,038,116 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	43,610,923 - 43,651,694 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	42,671,415 - 42,712,186 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	47,590,110 - 47,630,991 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	47,590,154 - 47,631,119 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	49,383,645 - 49,424,284 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	43,117,706 - 43,158,710 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	42,981,093 - 43,022,097 (+)	NCBI
Celera	12	43,445,286 - 43,486,291 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

GIT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	109,929,804 - 110,000,164 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	109,929,804 - 109,996,389 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	110,367,609 - 110,434,173 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	108,851,992 - 108,918,483 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	108,848,588 - 108,896,820	NCBI
Celera	12	109,991,955 - 110,058,428 (-)	NCBI		Celera
Cytogenetic Map	12	q24.11	NCBI
HuRef	12	107,383,692 - 107,449,937 (-)	NCBI		HuRef
CHM1_1	12	110,335,391 - 110,401,989 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	109,905,496 - 109,975,853 (-)	NCBI		T2T-CHM13v2.0

Git2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	114,865,469 - 114,912,647 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	114,865,468 - 114,913,578 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	114,727,408 - 114,774,588 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	114,727,407 - 114,775,517 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	115,177,417 - 115,223,501 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	114,988,410 - 115,034,490 (-)	NCBI		MGSCv36	mm8
Celera	5	111,825,622 - 111,871,698 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	55.99	NCBI

Git2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	8,613,490 - 8,670,205 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	8,611,218 - 8,669,527 (+)	NCBI	ChiLan1.0	ChiLan1.0

GIT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	117,996,751 - 118,063,703 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	117,993,154 - 118,060,124 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	107,505,791 - 107,572,641 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	110,901,293 - 110,967,489 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	110,901,303 - 110,967,489 (-)	Ensembl	panpan1.1		panPan2

GIT2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	17,170,651 - 17,217,634 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	17,170,680 - 17,214,631 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	18,584,319 - 18,631,531 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	17,515,164 - 17,562,316 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	17,515,162 - 17,562,313 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	18,794,107 - 18,841,098 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	17,504,924 - 17,552,144 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	17,522,393 - 17,569,401 (+)	NCBI		UU_Cfam_GSD_1.0

Git2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	143,901,711 - 143,948,385 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936769	1,527,151 - 1,574,892 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936769	1,529,983 - 1,574,805 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GIT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	40,995,988 - 41,051,902 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	40,995,986 - 41,051,896 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	43,511,566 - 43,567,474 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GIT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	105,171,441 - 105,235,661 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	105,169,099 - 105,235,290 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	139,885,173 - 139,947,837 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Git2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	10,518,671 - 10,580,179 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	10,518,651 - 10,580,179 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Git2
249 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	286
Count of miRNA genes:	187
Interacting mature miRNAs:	206
Transcripts:	ENSRNOT00000045946
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	19144362	46669029	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	19610870	42828880	Rat
61324	Eae5	Experimental allergic encephalomyelitis QTL 5	14		nervous system integrity trait (VT:0010566)	percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)	12	19610870	46669029	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	20328819	46669029	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	28064433	45899022	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	28064433	46669029	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	32103174	45899022	Rat

Markers in Region

RH132951

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	41,844,122 - 41,844,307 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	47,604,513 - 47,604,697	NCBI	Rnor6.0
Rnor_5.0	12	49,398,038 - 49,398,222	UniSTS	Rnor5.0
RGSC_v3.4	12	43,132,055 - 43,132,239	UniSTS	RGSC3.4
Celera	12	43,459,635 - 43,459,819	UniSTS
RH 3.4 Map	12	781.83	UniSTS
Cytogenetic Map	12	q16	UniSTS

BE120218

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	41,842,950 - 41,843,127 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	47,603,341 - 47,603,517	NCBI	Rnor6.0
Rnor_5.0	12	49,396,866 - 49,397,042	UniSTS	Rnor5.0
RGSC_v3.4	12	43,130,883 - 43,131,059	UniSTS	RGSC3.4
Celera	12	43,458,463 - 43,458,639	UniSTS
RH 3.4 Map	12	779.53	UniSTS
Cytogenetic Map	12	q16	UniSTS

AI511444

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	41,870,248 - 41,870,453 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	47,630,639 - 47,630,843	NCBI	Rnor6.0
Rnor_5.0	12	49,423,932 - 49,424,136	UniSTS	Rnor5.0
RGSC_v3.4	12	43,158,358 - 43,158,562	UniSTS	RGSC3.4
Celera	12	43,485,939 - 43,486,143	UniSTS
Cytogenetic Map	12	q16	UniSTS

RH139528

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	41,868,466 - 41,868,664 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	47,628,857 - 47,629,054	NCBI	Rnor6.0
Rnor_5.0	12	49,422,150 - 49,422,347	UniSTS	Rnor5.0
RGSC_v3.4	12	43,156,576 - 43,156,773	UniSTS	RGSC3.4
Celera	12	43,484,157 - 43,484,354	UniSTS
Cytogenetic Map	12	q16	UniSTS

RH140364

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	41,868,504 - 41,868,664 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	47,628,895 - 47,629,054	NCBI	Rnor6.0
Rnor_5.0	12	49,422,188 - 49,422,347	UniSTS	Rnor5.0
RGSC_v3.4	12	43,156,614 - 43,156,773	UniSTS	RGSC3.4
Celera	12	43,484,195 - 43,484,354	UniSTS
RH 3.4 Map	12	778.12	UniSTS
Cytogenetic Map	12	q16	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	56	40	19	40	6	7	74	35	41	11	6
Low			1	1		1	2	4					2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001005553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000045946 ⟹ ENSRNOP00000048331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	41,829,746 - 41,870,601 (+)	Ensembl
Rnor_6.0 Ensembl	12	47,590,154 - 47,631,119 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096072 ⟹ ENSRNOP00000086491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	41,829,773 - 41,870,600 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097577 ⟹ ENSRNOP00000081139

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	41,829,730 - 41,871,097 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000100352 ⟹ ENSRNOP00000093537

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	41,829,773 - 41,870,600 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105617 ⟹ ENSRNOP00000079644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	41,833,224 - 41,870,600 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108942 ⟹ ENSRNOP00000080405

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	41,829,746 - 41,870,600 (+)	Ensembl

RefSeq Acc Id:

NM_001005553 ⟹ NP_001005553

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,405 - 47,531,232 (+)	NCBI
mRatBN7.2	12	41,829,773 - 41,870,601 (+)	NCBI
Rnor_6.0	12	47,590,164 - 47,630,991 (+)	NCBI
Rnor_5.0	12	49,383,645 - 49,424,284 (+)	NCBI
RGSC_v3.4	12	43,117,706 - 43,158,710 (+)	RGD
Celera	12	43,445,286 - 43,486,291 (+)	RGD

Sequence:

show sequence

CGCCGCCAGCGCCGCCCGGGGACCCGTTAGAGCGGAAGCGCAGCCGCCGCCTCTGCCGTCGCGG
GGTTCCCGGCAGGTGAGGTGGGAGCCATGTCGAAGCGTCTCCGGAGCAACGACGTGTGCGCCGA
CTGCAGCGGGCCTGATCCTTCCTGGGCATCAGTGAACAGGGGGACTCTCATATGTGATGAGTGC
TGCAGTGTTCATCGGAGCCTAGGGCGCCACATCTCCCAAGTCAGGCATCTTAAACACACACCAT
GGCCTCCAACCCTGCTTCAGATGGTTGAGACCTTGTATAGCAATGGTGCTAATTCTATCTGGGA
GCATTCTTTGCTGGACCCTGCTTCTGTTATGAGTGGGAGACGGAAAGCCAATCCACAGGATAAA
GTCCACCCCAATAAAGCAGAATTCATCAGAGCCAAGTATCAGATGTTAGCATTTGTACACAGAT
TGCCCTGCCGTGACGACGACAGTGTGACTGCCAAAGATCTTAGTAAGCAACTCCATTCAAGTGT
GAGAACAGGGAATCTTGAGACCTGTCTGAGACTGTTGTCGTTAGGAGCCCAAGCCAACTTCTTC
CATCCTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCCTACAGGCTG
AATTGCTGGCAGTGTACGGAGCTGACCCAGGCACACACGATTCTAGTGGGAAGACTCCTGTTGA
CTATGCAAGGCAAGGAGGACACCGTGAGCTGGCCGAACGCCTCGTAGAAATACAGTACGAGCTG
ACGGACAGGCTGGCCTTCTACCTCTGCGGCCGGAAACCAGATCATAAAAACGGACAGCACTTTA
TAATCCCTCAGATGGCAGACAGCAGCCTGGATTTGTCTGAGTTGGCAAAAGCTGCCAAGAAGAA
ACTTCAGTCTCTAAGTAATCATTTGTTTGAAGAACTTGCCATGGATGTGTACGATGAAGTTGAC
AGACGAGAGACTGATGCAGTCTGGCTTGCCACGCAAAACCACAGCACCTTGGTAACTGAGACAA
CCGTCGTTCCCTTTCTTCCGGTCAACCCTGAGTACTCCTCGACACGAAACCAGGGCAGACAGAA
ATTAGCTCGGTTTAATGCCCATGAATTTGCTACACTGGTCATCGACATCCTCAGTGACGCCAAG
AGGAGACAGCAAGGCAGTCCTCTCTCCAGGTCAAAAGACAATGTGGAACTCATATTGAGAACAG
TCAGTAACCAGCACAGCACTGAGAGCCAGGACAATGACCAGCCAGACTATGACAGCGTGGCCTC
AGATGAAGACACAGACGTGGAGACCAGAGCAAGCAGGACAAACCGGCAGAAGAGCCTAGATTCA
GATTTGTCAGATGGACCAGTCACTGTGCAGGAGTTTATGGAGGTCAAACACGCCCTAGTGGCTT
CTGAGGCCAAGAGACAGCAGCTAATGAAGGTGAATAACAACCTGAGTGGCGAGCTGAGAATTAT
GCAGAAAAAGCTTCAAACTCTACAGAGTGAGAACTCAAGCCTCAGGAGACAGGCCACAGCCAGT
GCCTGTCAGGTCCAGACTGCCTCTGACCACAAAGACACTGTGAGCCACTCCTCCCTGAAGCGCC
GGCCATCAGCCCGGGGCAGTAGACCCATGTCCATGTATGAGACTGGATCAGGCCAGAAACCATA
CCTCCCAATGGGAGAAGCCAACCACCCTGAAGAAAGCCGGACAAGACTTCAGCCCTTCCCCACT
CATATTGGGAGGAGTGCACTTGTGACCTCCTCTTCGTCTCTGCCTTCCTTCCCCTCCACACTTT
CCTGGTCCAGGGACGAAAGCACCCGAAGGGCCTCCAGGTTGGAGAAGCAGAACAGCACCCCAGA
GAGCGATTATGACAACACTGCCTATGACCCTGAACCAGATGACACGGTGTCAGGCCGGAAGGGG
CGGCAGCGGAGTATGCTCTGGCAAGGTGATGGCCCACTGCCAGACACAGCAGAGCCCCACGCGG
TCCCCAGCCCCGCCCTCCCCAGCACAGAAGATGTCATCCGCAAGACTGAACAGATCACCAAAAA
CATCCAGGAGCTCCTCAGAGCAGCCCAGGAGAACAAGCATGACAGCTACATTCCCTGCTCAGAG
AGGATACACGCCGCTGTGACCGAGATGGCAGCCCTGTTCCCCAAAAAACCTAAGTCTGACACGG
TGAGGACTTCCCTCCGCCTACTAACGGCCAGTGCCTACCGGCTCCAGTCAGAGTGCAGAAAGGC
TCTCCCAGGAGACTCGAGCTTGCCCACGGATGTGCAGCTGGTCACACAGCAGGTCATCCAGTGT
GCCTATGACATTGCCAAGGCCGCCAAACAGCTGGTCACAATCACCACCAAAGAGAACAGCAGCT
GAGCTGCGGGTGCCGCCCTCCTGTTGTCTGGAAAGTCCGGCTGCAATGTAGACATGAACTTTGC
AGAGTTTTACAAAAATGTTTAATGATGACTTAAAACTTTTTAAGAGAAAACTCAGTATTATTTT
TGCATGTTTTCTAACAGATTTTTGACTGTAATTTAACCCCTGCCTTATTTGTGCCTGTTTGCAG
CTTAGTTCTGTCCTGTTGGATTGTCACCAAGTGCTTACTTAGGTCATGACCCCATGTGTTTAAA
AGTAATTGTTCAGAGTTTGTTACAACTTTCCCATCCTTTAAAATCTCTACCAATGCCTAAAACT
ATAATTGATATTTTTAGTAAAACATTTTCGTAAGAGATAAGAAAATTGGATTTTAAAACAGCAG
TAGCAGCAGCTCTTCCTTCCAAGCATTGGCAGTGAGAGAGCTTTCCGTCCTGGGGGCCTCAGCT
CGGGTGTCTTCAGGTGTGTATGGAGAGCAGGGCCTCGCCGCTCCCCAGGGACAGCGCATCTCTT
AGGAGTGACCAGGAACTGATCCTTTTCTAACTTTTGTATCATGTTAAGTGTTGTCTTATTTAAT
ATTTTTATCTTGATTTTCTATCTATAAAGATTTTACCATCAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

hide sequence

RefSeq Acc Id:

XM_006249442 ⟹ XP_006249504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,360 - 47,531,232 (+)	NCBI
mRatBN7.2	12	41,829,722 - 41,872,621 (+)	NCBI
Rnor_6.0	12	47,590,110 - 47,630,991 (+)	NCBI
Rnor_5.0	12	49,383,645 - 49,424,284 (+)	NCBI

Sequence:

show sequence

CGTCTCCCCGCGCGTGCGCAGTGCGCCGGGGCTGCGAGGCGCTGAGGGGAGAGGCGCCGCCAGC
GCCGCCCGGGGACCCGTTAGAGCGGAAGCGCAGCCGCCGCCTCTGCCGTCGCGGGGTTCCCGGC
AGGTGAGGTGGGAGCCATGTCGAAGCGTCTCCGGAGCAACGACGTGTGCGCCGACTGCAGCGGG
CCTGATCCTTCCTGGGCATCAGTGAACAGGGGGACTCTCATATGTGATGAGTGCTGCAGTGTTC
ATCGGAGCCTAGGGCGCCACATCTCCCAAGTCAGGCATCTTAAACACACACCATGGCCTCCAAC
CCTGCTTCAGATGGTTGAGACCTTGTATAGCAATGGTGCTAATTCTATCTGGGAGCATTCTTTG
CTGGACCCTGCTTCTGTTATGAGTGGGAGACGGAAAGCCAATCCACAGGATAAAGTCCACCCCA
ATAAAGCAGAATTCATCAGAGCCAAGTATCAGATGTTAGCATTTGTACACAGATTGCCCTGCCG
TGACGACGACAGTGTGACTGCCAAAGATCTTAGTAAGCAACTCCATTCAAGTGTGAGAACAGGG
AATCTTGAGACCTGTCTGAGACTGTTGTCGTTAGGAGCCCAAGCCAACTTCTTCCATCCTGAAA
AAGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCCTACAGGCTGAATTGCTGGC
AGTGTACGGAGCTGACCCAGGCACACACGATTCTAGTGGGAAGACTCCTGTTGACTATGCAAGG
CAAGGAGGACACCGTGAGCTGGCCGAACGCCTCGTAGAAATACAGTACGAGCTGACGGACAGGC
TGGCCTTCTACCTCTGCGGCCGGAAACCAGATCATAAAAACGGACAGCACTTTATAATCCCTCA
GATGGCAGACAGCCTGGATTTGTCTGAGTTGGCAAAAGCTGCCAAGAAGAAACTTCAGTCTCTA
AGTAATCATTTGTTTGAAGAACTTGCCATGGATGTGTACGATGAAGTTGACAGACGAGAGACTG
ATGCAGTCTGGCTTGCCACGCAAAACCACAGCACCTTGGTAACTGAGACAACCGTCGTTCCCTT
TCTTCCGGTCAACCCTGAGTACTCCTCGACACGAAACCAGGGCAGACAGAAATTAGCTCGGTTT
AATGCCCATGAATTTGCTACACTGGTCATCGACATCCTCAGTGACGCCAAGAGGAGACAGCAAG
GCAGTCCTCTCTCCAGGTCAAAAGACAATGTGGAACTCATATTGAGAACAGTCAGTAACCAGCA
CAGCACTGAGAGCCAGGACAATGACCAGCCAGACTATGACAGCGTGGCCTCAGATGAAGACACA
GACGTGGAGACCAGAGCAAGCAGGACAAACCGGCAGAAGAGCCTAGATTCAGATTTGTCAGATG
GACCAGTCACTGTGCAGGAGTTTATGGAGGTCAAACACGCCCTAGTGGCTTCTGAGGCCAAGAG
ACAGCAGCTAATGAAGGTGAATAACAACCTGAGTGGCGAGCTGAGAATTATGCAGAAAAAGCTT
CAAACTCTACAGAGTGAGAACTCAAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTCC
AGACTGCCTCTGACCACAAAGACACTGTGAGCCACTCCTCCCTGAAGCGCCGGCCATCAGCCCG
GGGCAGTAGACCCATGTCCATGTATGAGACTGGATCAGGCCAGAAACCATACCTCCCAATGGGA
GAAGCCAACCACCCTGAAGAAAGCCGGACAAGACTTCAGCCCTTCCCCACTCATATTGGGAGGA
GTGCACTTGTGACCTCCTCTTCGTCTCTGCCTTCCTTCCCCTCCACACTTTCCTGGTCCAGGGA
CGAAAGCACCCGAAGGGCCTCCAGGTTGGAGAAGCAGAACAGCACCCCAGAGAGCGATTATGAC
AACACTGCCTATGACCCTGAACCAGATGACACGGTGTCAGGCCGGAAGGGGCGGCAGCGGAGTA
TGCTCTGGCAAGGTGATGGCCCACTGCCAGACACAGCAGAGCCCCACGCGGTCCCCAGCCCCGC
CCTCCCCAGCACAGAAGATGTCATCCGCAAGACTGAACAGATCACCAAAAACATCCAGGAGCTC
CTCAGAGCAGCCCAGGAGAACAAGCATGACAGCTACATTCCCTGCTCAGAGAGGATACACGCCG
CTGTGACCGAGATGGCAGCCCTGTTCCCCAAAAAACCTAAGTCTGACACGGTGAGGACTTCCCT
CCGCCTACTAACGGCCAGTGCCTACCGGCTCCAGTCAGAGTGCAGAAAGGCTCTCCCAGGAGAC
TCGAGCTTGCCCACGGATGTGCAGCTGGTCACACAGCAGGTCATCCAGTGTGCCTATGACATTG
CCAAGGCCGCCAAACAGCTGGTCACAATCACCACCAAAGAGAACAGCAGCTGAGCTGCGGGTGC
CGCCCTCCTGTTGTCTGGAAAGTCCGGCTGCAATGTAGACATGAACTTTGCAGAGTTTTACAAA
AATGTTTAATGATGACTTAAAACTTTTTAAGAGAAAACTCAGTATTATTTTTGCATGTTTTCTA
ACAGATTTTTGACTGTAATTTAACCCCTGCCTTATTTGTGCCTGTTTGCAGCTTAGTTCTGTCC
TGTTGGATTGTCACCAAGTGCTTACTTAGGTCATGACCCCATGTGTTTAAAAGTAATTGTTCAG
AGTTTGTTACAACTTTCCCATCCTTTAAAATCTCTACCAATGCCTAAAACTATAATTGATATTT
TTAGTAAAACATTTTCGTAAGAGATAAGAAAATTGGATTTTAAAACAGCAGTAGCAGCAGCTCT
TCCTTCCAAGCATTGGCAGTGAGAGAGCTTTCCGTCCTGGGGGCCTCAGCTCGGGTGTCTTCAG
GTGTGTATGGAGAGCAGGGCCTCGCCGCTCCCCAGGGACAGCGCATCTCTTAGGAGTGACCAGG
AACTGATCCTTTTCTAACTTTTGTATCATGTTAAGTGTTGTCTTATTTAATATTTTTATCTTGA
TTTTCTATCTATAAAGATTTTACCATCA

hide sequence

RefSeq Acc Id:

XM_006249445 ⟹ XP_006249507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,360 - 47,531,232 (+)	NCBI
mRatBN7.2	12	41,829,722 - 41,872,621 (+)	NCBI
Rnor_6.0	12	47,590,111 - 47,630,991 (+)	NCBI
Rnor_5.0	12	49,383,645 - 49,424,284 (+)	NCBI

Sequence:

show sequence

GTCTCCCCGCGCGTGCGCAGTGCGCCGGGGCTGCGAGGCGCTGAGGGGAGAGGCGCCGCCAGCG
CCGCCCGGGGACCCGTTAGAGCGGAAGCGCAGCCGCCGCCTCTGCCGTCGCGGGGTTCCCGGCA
GGTGAGGTGGGAGCCATGTCGAAGCGTCTCCGGAGCAACGACGTGTGCGCCGACTGCAGCGGGC
CTGATCCTTCCTGGGCATCAGTGAACAGGGGGACTCTCATATGTGATGAGTGCTGCAGTGTTCA
TCGGAGCCTAGGGCGCCACATCTCCCAAGTCAGGCATCTTAAACACACACCATGGCCTCCAACC
CTGCTTCAGATGGTTGAGACCTTGTATAGCAATGGTGCTAATTCTATCTGGGAGCATTCTTTGC
TGGACCCTGCTTCTGTTATGAGTGGGAGACGGAAAGCCAATCCACAGGATAAAGTCCACCCCAA
TAAAGCAGAATTCATCAGAGCCAAGTATCAGATGTTAGCATTTGTACACAGATTGCCCTGCCGT
GACGACGACAGTGTGACTGCCAAAGATCTTAGTAAGCAACTCCATTCAAGTGTGAGAACAGGGA
ATCTTGAGACCTGTCTGAGACTGTTGTCGTTAGGAGCCCAAGCCAACTTCTTCCATCCTGAAAA
AGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCCTACAGGCTGAATTGCTGGCA
GTGTACGGAGCTGACCCAGGCACACACGATTCTAGTGGGAAGACTCCTGTTGACTATGCAAGGC
AAGGAGGACACCGTGAGCTGGCCGAACGCCTCGTAGAAATACAGTACGAGCTGACGGACAGGCT
GGCCTTCTACCTCTGCGGCCGGAAACCAGATCATAAAAACGGACAGCACTTTATAATCCCTCAG
ATGGCAGACAGCAGCCTGGATTTGTCTGAGTTGGCAAAAGCTGCCAAGAAGAAACTTCAGTCTC
TAAGTAATCATTTGTTTGAAGAACTTGCCATGGATGTGTACGATGAAGTTGACAGACGAGAGAC
TGATGCAGTCTGGCTTGCCACGCAAAACCACAGCACCTTGGTAACTGAGACAACCGTCGTTCCC
TTTCTTCCGGTCAACCCTGAGTACTCCTCGACACGAAACCAGGGCAGACAGAAATTAGCTCGGT
TTAATGCCCATGAATTTGCTACACTGGTCATCGACATCCTCAGTGACGCCAAGAGGAGACAGCA
AGGCAGTCCTCTCTCCAGGTCAAAAGACAATGTGGAACTCATATTGAGAACAGTCAGTAACCAG
CACAGCACTGAGAGCCAGGACAATGACCAGCCAGACTATGACAGCGTGGCCTCAGATGAAGACA
CAGACGTGGAGACCAGAGCAAGCAGGACAAACCGGCAGAAGAGCCTAGATTCAGATTTGTCAGA
TGGACCAGTCACTGTGCAGGAGTTTATGGAGGTCAAACACGCCCTAGTGGCTTCTGAGGCCAAG
AGACAGCAGCTAATGAAGGTGAATAACAACCTGAGTGGCGAGCTGAGAATTATGCAGAAAAAGC
TTCAAACTCTACAGAGTGAGAACTCAAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGT
CCAGACTGCCTCTGACCACAAAGACACTGTGAGCCACTCCTCCCTGAAGCGCCGGCCATCAGCC
CGGGGCAGTAGACCCATGTCCATGTATGAGACTGGATCAGGCCAGAAACCATACCTCCCAATGG
GAGAAGCCAACCACCCTGAAGAAAGCCGGACAAGACTTCAGCCCTTCCCCACTCATGCCTCCAG
GTTGGAGAAGCAGAACAGCACCCCAGAGAGCGATTATGACAACACTGCCTATGACCCTGAACCA
GATGACACGGTGTCAGGCCGGAAGGGGCGGCAGCGGAGTATGCTCTGGCAAGGTGATGGCCCAC
TGCCAGACACAGCAGAGCCCCACGCGGTCCCCAGCCCCGCCCTCCCCAGCACAGAAGATGTCAT
CCGCAAGACTGAACAGATCACCAAAAACATCCAGGAGCTCCTCAGAGCAGCCCAGGAGAACAAG
CATGACAGCTACATTCCCTGCTCAGAGAGGATACACGCCGCTGTGACCGAGATGGCAGCCCTGT
TCCCCAAAAAACCTAAGTCTGACACGGTGAGGACTTCCCTCCGCCTACTAACGGCCAGTGCCTA
CCGGCTCCAGTCAGAGTGCAGAAAGGCTCTCCCAGGAGACTCGAGCTTGCCCACGGATGTGCAG
CTGGTCACACAGCAGGTCATCCAGTGTGCCTATGACATTGCCAAGGCCGCCAAACAGCTGGTCA
CAATCACCACCAAAGAGAACAGCAGCTGAGCTGCGGGTGCCGCCCTCCTGTTGTCTGGAAAGTC
CGGCTGCAATGTAGACATGAACTTTGCAGAGTTTTACAAAAATGTTTAATGATGACTTAAAACT
TTTTAAGAGAAAACTCAGTATTATTTTTGCATGTTTTCTAACAGATTTTTGACTGTAATTTAAC
CCCTGCCTTATTTGTGCCTGTTTGCAGCTTAGTTCTGTCCTGTTGGATTGTCACCAAGTGCTTA
CTTAGGTCATGACCCCATGTGTTTAAAAGTAATTGTTCAGAGTTTGTTACAACTTTCCCATCCT
TTAAAATCTCTACCAATGCCTAAAACTATAATTGATATTTTTAGTAAAACATTTTCGTAAGAGA
TAAGAAAATTGGATTTTAAAACAGCAGTAGCAGCAGCTCTTCCTTCCAAGCATTGGCAGTGAGA
GAGCTTTCCGTCCTGGGGGCCTCAGCTCGGGTGTCTTCAGGTGTGTATGGAGAGCAGGGCCTCG
CCGCTCCCCAGGGACAGCGCATCTCTTAGGAGTGACCAGGAACTGATCCTTTTCTAACTTTTGT
ATCATGTTAAGTGTTGTCTTATTTAATATTTTTATCTTGATTTTCTATCTATAAAGATTTTACC
ATCA

hide sequence

RefSeq Acc Id:

XM_006249447 ⟹ XP_006249509

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,350 - 47,531,232 (+)	NCBI
mRatBN7.2	12	41,829,722 - 41,872,621 (+)	NCBI
Rnor_6.0	12	47,590,111 - 47,630,991 (+)	NCBI
Rnor_5.0	12	49,383,645 - 49,424,284 (+)	NCBI

Sequence:

show sequence

GTCTCCCCGCGCGTGCGCAGTGCGCCGGGGCTGCGAGGCGCTGAGGGGAGAGGCGCCGCCAGCG
CCGCCCGGGGACCCGTTAGAGCGGAAGCGCAGCCGCCGCCTCTGCCGTCGCGGGGTTCCCGGCA
GGTGAGGTGGGAGCCATGTCGAAGCGTCTCCGGAGCAACGACGTGTGCGCCGACTGCAGCGGGC
CTGATCCTTCCTGGGCATCAGTGAACAGGGGGACTCTCATATGTGATGAGTGCTGCAGTGTTCA
TCGGAGCCTAGGGCGCCACATCTCCCAAGTCAGGCATCTTAAACACACACCATGGCCTCCAACC
CTGCTTCAGATGGTTGAGACCTTGTATAGCAATGGTGCTAATTCTATCTGGGAGCATTCTTTGC
TGGACCCTGCTTCTGTTATGAGTGGGAGACGGAAAGCCAATCCACAGGATAAAGTCCACCCCAA
TAAAGCAGAATTCATCAGAGCCAAGTATCAGATGTTAGCATTTGTACACAGATTGCCCTGCCGT
GACGACGACAGTGTGACTGCCAAAGATCTTAGTAAGCAACTCCATTCAAGTGTGAGAACAGGGA
ATCTTGAGACCTGTCTGAGACTGTTGTCGTTAGGAGCCCAAGCCAACTTCTTCCATCCTGAAAA
AGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCCTACAGGCTGAATTGCTGGCA
GTGTACGGAGCTGACCCAGGCACACACGATTCTAGTGGGAAGACTCCTGTTGACTATGCAAGGC
AAGGAGGACACCGTGAGCTGGCCGAACGCCTCGTAGAAATACAGTACGAGCTGACGGACAGGCT
GGCCTTCTACCTCTGCGGCCGGAAACCAGATCATAAAAACGGACAGCACTTTATAATCCCTCAG
ATGGCAGACAGCCTGGATTTGTCTGAGTTGGCAAAAGCTGCCAAGAAGAAACTTCAGTCTCTAA
GTAATCATTTGTTTGAAGAACTTGCCATGGATGTGTACGATGAAGTTGACAGACGAGAGACTGA
TGCAGTCTGGCTTGCCACGCAAAACCACAGCACCTTGGTAACTGAGACAACCGTCGTTCCCTTT
CTTCCGGTCAACCCTGAGTACTCCTCGACACGAAACCAGGGCAGACAGAAATTAGCTCGGTTTA
ATGCCCATGAATTTGCTACACTGGTCATCGACATCCTCAGTGACGCCAAGAGGAGACAGCAAGG
CAGTCCTCTCTCCAGGTCAAAAGACAATGTGGAACTCATATTGAGAACAGTCAGTAACCAGCAC
AGCACTGAGAGCCAGGACAATGACCAGCCAGACTATGACAGCGTGGCCTCAGATGAAGACACAG
ACGTGGAGACCAGAGCAAGCAGGACAAACCGGCAGAAGCTTCAAACTCTACAGAGTGAGAACTC
AAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTCCAGACTGCCTCTGACCACAAAGAC
ACTGTGAGCCACTCCTCCCTGAAGCGCCGGCCATCAGCCCGGGGCAGTAGACCCATGTCCATGT
ATGAGACTGGATCAGGCCAGAAACCATACCTCCCAATGGGAGAAGCCAACCACCCTGAAGAAAG
CCGGACAAGACTTCAGCCCTTCCCCACTCATATTGGGAGGAGTGCACTTGTGACCTCCTCTTCG
TCTCTGCCTTCCTTCCCCTCCACACTTTCCTGGTCCAGGGACGAAAGCACCCGAAGGGCCTCCA
GGTTGGAGAAGCAGAACAGCACCCCAGAGAGCGATTATGACAACACTGCCTATGACCCTGAACC
AGATGACACGGTGTCAGGCCGGAAGGGGCGGCAGCGGAGTATGCTCTGGCAAGGTGATGGCCCA
CTGCCAGACACAGCAGAGCCCCACGCGGTCCCCAGCCCCGCCCTCCCCAGCACAGAAGATGTCA
TCCGCAAGACTGAACAGATCACCAAAAACATCCAGGAGCTCCTCAGAGCAGCCCAGGAGAACAA
GCATGACAGCTACATTCCCTGCTCAGAGAGGATACACGCCGCTGTGACCGAGATGGCAGCCCTG
TTCCCCAAAAAACCTAAGTCTGACACGGTGAGGACTTCCCTCCGCCTACTAACGGCCAGTGCCT
ACCGGCTCCAGTCAGAGTGCAGAAAGGCTCTCCCAGGAGACTCGAGCTTGCCCACGGATGTGCA
GCTGGTCACACAGCAGGTCATCCAGTGTGCCTATGACATTGCCAAGGCCGCCAAACAGCTGGTC
ACAATCACCACCAAAGAGAACAGCAGCTGAGCTGCGGGTGCCGCCCTCCTGTTGTCTGGAAAGT
CCGGCTGCAATGTAGACATGAACTTTGCAGAGTTTTACAAAAATGTTTAATGATGACTTAAAAC
TTTTTAAGAGAAAACTCAGTATTATTTTTGCATGTTTTCTAACAGATTTTTGACTGTAATTTAA
CCCCTGCCTTATTTGTGCCTGTTTGCAGCTTAGTTCTGTCCTGTTGGATTGTCACCAAGTGCTT
ACTTAGGTCATGACCCCATGTGTTTAAAAGTAATTGTTCAGAGTTTGTTACAACTTTCCCATCC
TTTAAAATCTCTACCAATGCCTAAAACTATAATTGATATTTTTAGTAAAACATTTTCGTAAGAG
ATAAGAAAATTGGATTTTAAAACAGCAGTAGCAGCAGCTCTTCCTTCCAAGCATTGGCAGTGAG
AGAGCTTTCCGTCCTGGGGGCCTCAGCTCGGGTGTCTTCAGGTGTGTATGGAGAGCAGGGCCTC
GCCGCTCCCCAGGGACAGCGCATCTCTTAGGAGTGACCAGGAACTGATCCTTTTCTAACTTTTG
TATCATGTTAAGTGTTGTCTTATTTAATATTTTTATCTTGATTTTCTATCTATAAAGATTTTAC
CATCA

hide sequence

RefSeq Acc Id:

XM_006249450 ⟹ XP_006249512

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,360 - 47,531,232 (+)	NCBI
mRatBN7.2	12	41,829,723 - 41,872,621 (+)	NCBI
Rnor_6.0	12	47,590,111 - 47,630,991 (+)	NCBI
Rnor_5.0	12	49,383,645 - 49,424,284 (+)	NCBI

Sequence:

show sequence

GTCTCCCCGCGCGTGCGCAGTGCGCCGGGGCTGCGAGGCGCTGAGGGGAGAGGCGCCGCCAGCG
CCGCCCGGGGACCCGTTAGAGCGGAAGCGCAGCCGCCGCCTCTGCCGTCGCGGGGTTCCCGGCA
GGTGAGGTGGGAGCCATGTCGAAGCGTCTCCGGAGCAACGACGTGTGCGCCGACTGCAGCGGGC
CTGATCCTTCCTGGGCATCAGTGAACAGGGGGACTCTCATATGTGATGAGTGCTGCAGTGTTCA
TCGGAGCCTAGGGCGCCACATCTCCCAAGTCAGGCATCTTAAACACACACCATGGCCTCCAACC
CTGCTTCAGATGGTTGAGACCTTGTATAGCAATGGTGCTAATTCTATCTGGGAGCATTCTTTGC
TGGACCCTGCTTCTGTTATGAGTGGGAGACGGAAAGCCAATCCACAGGATAAAGTCCACCCCAA
TAAAGCAGAATTCATCAGAGCCAAGTATCAGATGTTAGCATTTGTACACAGATTGCCCTGCCGT
GACGACGACAGTGTGACTGCCAAAGATCTTAGTAAGCAACTCCATTCAAGTGTGAGAACAGGGA
ATCTTGAGACCTGTCTGAGACTGTTGTCGTTAGGAGCCCAAGCCAACTTCTTCCATCCTGAAAA
AGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCCTACAGGCTGAATTGCTGGCA
GTGTACGGAGCTGACCCAGGCACACACGATTCTAGTGGGAAGACTCCTGTTGACTATGCAAGGC
AAGGAGGACACCGTGAGCTGGCCGAACGCCTCGTAGAAATACAGTACGAGCTGACGGACAGGCT
GGCCTTCTACCTCTGCGGCCGGAAACCAGATCATAAAAACGGACAGCACTTTATAATCCCTCAG
ATGGCAGACAGCAGCCTGGATTTGTCTGAGTTGGCAAAAGCTGCCAAGAAGAAACTTCAGTCTC
TAAGTAATCATTTGTTTGAAGAACTTGCCATGGATGTGTACGATGAAGTTGACAGACGAGAGAC
TGATGCAGTCTGGCTTGCCACGCAAAACCACAGCACCTTGGTAACTGAGACAACCGTCGTTCCC
TTTCTTCCGGTCAACCCTGAGTACTCCTCGACACGAAACCAGGGCAGACAGAAATTAGCTCGGT
TTAATGCCCATGAATTTGCTACACTGGTCATCGACATCCTCAGTGACGCCAAGAGGAGACAGCA
AGGCAGTCCTCTCTCCAGGTCAAAAGACAATGTGGAACTCATATTGAGAACAGTCAGTAACCAG
CACAGCACTGAGAGCCAGGACAATGACCAGCCAGACTATGACAGCGTGGCCTCAGATGAAGACA
CAGACGTGGAGACCAGAGCAAGCAGGACAAACCGGCAGAAGCTTCAAACTCTACAGAGTGAGAA
CTCAAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTCCAGACTGCCTCTGACCACAAA
GACACTGTGAGCCACTCCTCCCTGAAGCGCCGGCCATCAGCCCGGGGCAGTAGACCCATGTCCA
TGTATGAGACTGGATCAGGCCAGAAACCATACCTCCCAATGGGAGAAGCCAACCACCCTGAAGA
AAGCCGGACAAGACTTCAGCCCTTCCCCACTCATGCCTCCAGGTTGGAGAAGCAGAACAGCACC
CCAGAGAGCGATTATGACAACACTGCCTATGACCCTGAACCAGATGACACGGTGTCAGGCCGGA
AGGGGCGGCAGCGGAGTATGCTCTGGCAAGGTGATGGCCCACTGCCAGACACAGCAGAGCCCCA
CGCGGTCCCCAGCCCCGCCCTCCCCAGCACAGAAGATGTCATCCGCAAGACTGAACAGATCACC
AAAAACATCCAGGAGCTCCTCAGAGCAGCCCAGGAGAACAAGCATGACAGCTACATTCCCTGCT
CAGAGAGGATACACGCCGCTGTGACCGAGATGGCAGCCCTGTTCCCCAAAAAACCTAAGTCTGA
CACGGTGAGGACTTCCCTCCGCCTACTAACGGCCAGTGCCTACCGGCTCCAGTCAGAGTGCAGA
AAGGCTCTCCCAGGAGACTCGAGCTTGCCCACGGATGTGCAGCTGGTCACACAGCAGGTCATCC
AGTGTGCCTATGACATTGCCAAGGCCGCCAAACAGCTGGTCACAATCACCACCAAAGAGAACAG
CAGCTGAGCTGCGGGTGCCGCCCTCCTGTTGTCTGGAAAGTCCGGCTGCAATGTAGACATGAAC
TTTGCAGAGTTTTACAAAAATGTTTAATGATGACTTAAAACTTTTTAAGAGAAAACTCAGTATT
ATTTTTGCATGTTTTCTAACAGATTTTTGACTGTAATTTAACCCCTGCCTTATTTGTGCCTGTT
TGCAGCTTAGTTCTGTCCTGTTGGATTGTCACCAAGTGCTTACTTAGGTCATGACCCCATGTGT
TTAAAAGTAATTGTTCAGAGTTTGTTACAACTTTCCCATCCTTTAAAATCTCTACCAATGCCTA
AAACTATAATTGATATTTTTAGTAAAACATTTTCGTAAGAGATAAGAAAATTGGATTTTAAAAC
AGCAGTAGCAGCAGCTCTTCCTTCCAAGCATTGGCAGTGAGAGAGCTTTCCGTCCTGGGGGCCT
CAGCTCGGGTGTCTTCAGGTGTGTATGGAGAGCAGGGCCTCGCCGCTCCCCAGGGACAGCGCAT
CTCTTAGGAGTGACCAGGAACTGATCCTTTTCTAACTTTTGTATCATGTTAAGTGTTGTCTTAT
TTAATATTTTTATCTTGATTTTCTATCTATAAAGATTTTACCATCA

hide sequence

RefSeq Acc Id:

XM_063271354 ⟹ XP_063127424

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,359 - 47,531,232 (+)	NCBI

RefSeq Acc Id:

XM_063271355 ⟹ XP_063127425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,359 - 47,531,232 (+)	NCBI

RefSeq Acc Id:

XM_063271356 ⟹ XP_063127426

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,360 - 47,531,232 (+)	NCBI

RefSeq Acc Id:

XM_063271357 ⟹ XP_063127427

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,360 - 47,531,232 (+)	NCBI

RefSeq Acc Id:

XM_063271358 ⟹ XP_063127428

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,360 - 47,531,232 (+)	NCBI

RefSeq Acc Id:

XM_063271359 ⟹ XP_063127429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,357 - 47,531,232 (+)	NCBI

RefSeq Acc Id:

XM_063271360 ⟹ XP_063127430

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,362 - 47,531,232 (+)	NCBI

RefSeq Acc Id:

XM_063271361 ⟹ XP_063127431

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	47,490,350 - 47,531,232 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001005553	(Get FASTA)	NCBI Sequence Viewer
	XP_006249504	(Get FASTA)	NCBI Sequence Viewer
	XP_006249507	(Get FASTA)	NCBI Sequence Viewer
	XP_006249509	(Get FASTA)	NCBI Sequence Viewer
	XP_006249512	(Get FASTA)	NCBI Sequence Viewer
	XP_063127424	(Get FASTA)	NCBI Sequence Viewer
	XP_063127425	(Get FASTA)	NCBI Sequence Viewer
	XP_063127426	(Get FASTA)	NCBI Sequence Viewer
	XP_063127427	(Get FASTA)	NCBI Sequence Viewer
	XP_063127428	(Get FASTA)	NCBI Sequence Viewer
	XP_063127429	(Get FASTA)	NCBI Sequence Viewer
	XP_063127430	(Get FASTA)	NCBI Sequence Viewer
	XP_063127431	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81967	(Get FASTA)	NCBI Sequence Viewer
	EDM13925	(Get FASTA)	NCBI Sequence Viewer
	EDM13926	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000048331
	ENSRNOP00000048331.3
	ENSRNOP00000079644.1
	ENSRNOP00000080405.1
	ENSRNOP00000081139.1
	ENSRNOP00000086491
	ENSRNOP00000086491.1
	ENSRNOP00000093537.1
GenBank Protein	Q66H91	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001005553 ⟸ NM_001005553

- UniProtKB:

Q66H91 (UniProtKB/TrEMBL), A0A8L2UM41 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSKRLRSNDVCADCSGPDPSWASVNRGTLICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMV
ETLYSNGANSIWEHSLLDPASVMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSV
TAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAELLAVYGAD
PGTHDSSGKTPVDYARQGGHRELAERLVEIQYELTDRLAFYLCGRKPDHKNGQHFIIPQMADSS
LDLSELAKAAKKKLQSLSNHLFEELAMDVYDEVDRRETDAVWLATQNHSTLVTETTVVPFLPVN
PEYSSTRNQGRQKLARFNAHEFATLVIDILSDAKRRQQGSPLSRSKDNVELILRTVSNQHSTES
QDNDQPDYDSVASDEDTDVETRASRTNRQKSLDSDLSDGPVTVQEFMEVKHALVASEAKRQQLM
KVNNNLSGELRIMQKKLQTLQSENSSLRRQATASACQVQTASDHKDTVSHSSLKRRPSARGSRP
MSMYETGSGQKPYLPMGEANHPEESRTRLQPFPTHIGRSALVTSSSSLPSFPSTLSWSRDESTR
RASRLEKQNSTPESDYDNTAYDPEPDDTVSGRKGRQRSMLWQGDGPLPDTAEPHAVPSPALPST
EDVIRKTEQITKNIQELLRAAQENKHDSYIPCSERIHAAVTEMAALFPKKPKSDTVRTSLRLLT
ASAYRLQSECRKALPGDSSLPTDVQLVTQQVIQCAYDIAKAAKQLVTITTKENSS

hide sequence

RefSeq Acc Id:	XP_006249507 ⟸ XM_006249445
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A5F6 (UniProtKB/TrEMBL), A0A8L2UM41 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKRLRSNDVCADCSGPDPSWASVNRGTLICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMV ETLYSNGANSIWEHSLLDPASVMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSV TAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAELLAVYGAD PGTHDSSGKTPVDYARQGGHRELAERLVEIQYELTDRLAFYLCGRKPDHKNGQHFIIPQMADSS LDLSELAKAAKKKLQSLSNHLFEELAMDVYDEVDRRETDAVWLATQNHSTLVTETTVVPFLPVN PEYSSTRNQGRQKLARFNAHEFATLVIDILSDAKRRQQGSPLSRSKDNVELILRTVSNQHSTES QDNDQPDYDSVASDEDTDVETRASRTNRQKSLDSDLSDGPVTVQEFMEVKHALVASEAKRQQLM KVNNNLSGELRIMQKKLQTLQSENSSLRRQATASACQVQTASDHKDTVSHSSLKRRPSARGSRP MSMYETGSGQKPYLPMGEANHPEESRTRLQPFPTHASRLEKQNSTPESDYDNTAYDPEPDDTVS GRKGRQRSMLWQGDGPLPDTAEPHAVPSPALPSTEDVIRKTEQITKNIQELLRAAQENKHDSYI PCSERIHAAVTEMAALFPKKPKSDTVRTSLRLLTASAYRLQSECRKALPGDSSLPTDVQLVTQQ VIQCAYDIAKAAKQLVTITTKENSS hide sequence

RefSeq Acc Id:	XP_006249512 ⟸ XM_006249450
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6G6J8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKRLRSNDVCADCSGPDPSWASVNRGTLICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMV ETLYSNGANSIWEHSLLDPASVMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSV TAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAELLAVYGAD PGTHDSSGKTPVDYARQGGHRELAERLVEIQYELTDRLAFYLCGRKPDHKNGQHFIIPQMADSS LDLSELAKAAKKKLQSLSNHLFEELAMDVYDEVDRRETDAVWLATQNHSTLVTETTVVPFLPVN PEYSSTRNQGRQKLARFNAHEFATLVIDILSDAKRRQQGSPLSRSKDNVELILRTVSNQHSTES QDNDQPDYDSVASDEDTDVETRASRTNRQKLQTLQSENSSLRRQATASACQVQTASDHKDTVSH SSLKRRPSARGSRPMSMYETGSGQKPYLPMGEANHPEESRTRLQPFPTHASRLEKQNSTPESDY DNTAYDPEPDDTVSGRKGRQRSMLWQGDGPLPDTAEPHAVPSPALPSTEDVIRKTEQITKNIQE LLRAAQENKHDSYIPCSERIHAAVTEMAALFPKKPKSDTVRTSLRLLTASAYRLQSECRKALPG DSSLPTDVQLVTQQVIQCAYDIAKAAKQLVTITTKENSS hide sequence

RefSeq Acc Id:	XP_006249504 ⟸ XM_006249442
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2UM41 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKRLRSNDVCADCSGPDPSWASVNRGTLICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMV ETLYSNGANSIWEHSLLDPASVMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSV TAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAELLAVYGAD PGTHDSSGKTPVDYARQGGHRELAERLVEIQYELTDRLAFYLCGRKPDHKNGQHFIIPQMADSL DLSELAKAAKKKLQSLSNHLFEELAMDVYDEVDRRETDAVWLATQNHSTLVTETTVVPFLPVNP EYSSTRNQGRQKLARFNAHEFATLVIDILSDAKRRQQGSPLSRSKDNVELILRTVSNQHSTESQ DNDQPDYDSVASDEDTDVETRASRTNRQKSLDSDLSDGPVTVQEFMEVKHALVASEAKRQQLMK VNNNLSGELRIMQKKLQTLQSENSSLRRQATASACQVQTASDHKDTVSHSSLKRRPSARGSRPM SMYETGSGQKPYLPMGEANHPEESRTRLQPFPTHIGRSALVTSSSSLPSFPSTLSWSRDESTRR ASRLEKQNSTPESDYDNTAYDPEPDDTVSGRKGRQRSMLWQGDGPLPDTAEPHAVPSPALPSTE DVIRKTEQITKNIQELLRAAQENKHDSYIPCSERIHAAVTEMAALFPKKPKSDTVRTSLRLLTA SAYRLQSECRKALPGDSSLPTDVQLVTQQVIQCAYDIAKAAKQLVTITTKENSS hide sequence

RefSeq Acc Id:	XP_006249509 ⟸ XM_006249447
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6G6J8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKRLRSNDVCADCSGPDPSWASVNRGTLICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMV ETLYSNGANSIWEHSLLDPASVMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSV TAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAELLAVYGAD PGTHDSSGKTPVDYARQGGHRELAERLVEIQYELTDRLAFYLCGRKPDHKNGQHFIIPQMADSL DLSELAKAAKKKLQSLSNHLFEELAMDVYDEVDRRETDAVWLATQNHSTLVTETTVVPFLPVNP EYSSTRNQGRQKLARFNAHEFATLVIDILSDAKRRQQGSPLSRSKDNVELILRTVSNQHSTESQ DNDQPDYDSVASDEDTDVETRASRTNRQKLQTLQSENSSLRRQATASACQVQTASDHKDTVSHS SLKRRPSARGSRPMSMYETGSGQKPYLPMGEANHPEESRTRLQPFPTHIGRSALVTSSSSLPSF PSTLSWSRDESTRRASRLEKQNSTPESDYDNTAYDPEPDDTVSGRKGRQRSMLWQGDGPLPDTA EPHAVPSPALPSTEDVIRKTEQITKNIQELLRAAQENKHDSYIPCSERIHAAVTEMAALFPKKP KSDTVRTSLRLLTASAYRLQSECRKALPGDSSLPTDVQLVTQQVIQCAYDIAKAAKQLVTITTK ENSS hide sequence

RefSeq Acc Id:

ENSRNOP00000048331 ⟸ ENSRNOT00000045946

RefSeq Acc Id:

ENSRNOP00000081139 ⟸ ENSRNOT00000097577

RefSeq Acc Id:

ENSRNOP00000086491 ⟸ ENSRNOT00000096072

RefSeq Acc Id:

ENSRNOP00000080405 ⟸ ENSRNOT00000108942

RefSeq Acc Id:

ENSRNOP00000079644 ⟸ ENSRNOT00000105617

RefSeq Acc Id:

ENSRNOP00000093537 ⟸ ENSRNOT00000100352

RefSeq Acc Id:	XP_063127431 ⟸ XM_063271361
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063127429 ⟸ XM_063271359
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZRU3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127424 ⟸ XM_063271354
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063127425 ⟸ XM_063271355
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063127427 ⟸ XM_063271357
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063127426 ⟸ XM_063271356
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063127428 ⟸ XM_063271358
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063127430 ⟸ XM_063271360
- Peptide Label:	isoform X10

Protein Domains

Arf-GAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66H91-F1-model_v2	AlphaFold	Q66H91	1-759	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698707

Promoter ID:

EPDNEW_R9232

Type:

initiation region

Name:

Git2_1

Description:

GIT ArfGAP 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	47,590,129 - 47,590,189	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359708	AgrOrtholog
BioCyc Gene	G2FUF-18959	BioCyc
Ensembl Genes	ENSRNOG00000001190	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000045946	ENTREZGENE
	ENSRNOT00000045946.4	UniProtKB/TrEMBL
	ENSRNOT00000096072.1	UniProtKB/TrEMBL
	ENSRNOT00000097577.1	UniProtKB/TrEMBL
	ENSRNOT00000100352.1	UniProtKB/TrEMBL
	ENSRNOT00000105617.1	UniProtKB/TrEMBL
	ENSRNOT00000108942.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.220.150	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.20.5.170	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.25.40.20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotidyltransferases domain 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7125406	IMAGE-MGC_LOAD
InterPro	Ankyrin_rpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ARFGAP/RecO	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ArfGAP_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ArfGAP_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GIT-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GIT1/2_CC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GIT1_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GIT_SHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:304546	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94099	IMAGE-MGC_LOAD
NCBI Gene	304546	ENTREZGENE
PANTHER	ARF GTPASE-ACTIVATING PROTEIN GIT2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Ank_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ArfGap	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GIT1_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GIT_CC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GIT_SHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Git2	PhenoGen
PRINTS	REVINTRACTNG	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	ANK_REP_REGION	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ARFGAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001190	RatGTEx
SMART	ANK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ArfGap	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GIT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF48403	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF57863	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZN29_RAT	UniProtKB/TrEMBL
	A0A8I5ZRU3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A5F6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ALK4_RAT	UniProtKB/TrEMBL
	A0A8I6G6J8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UM41	ENTREZGENE, UniProtKB/TrEMBL
	A6J1Y6_RAT	UniProtKB/TrEMBL
	A6J1Y7_RAT	UniProtKB/TrEMBL
	GIT2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-22	Git2	GIT ArfGAP 2	Git2	G protein-coupled receptor kinase interacting ArfGAP 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-23	Git2	G protein-coupled receptor kinase interacting ArfGAP 2	Git2	G protein-coupled receptor kinase-interactor 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Git2	G protein-coupled receptor kinase-interactor 2	MGC94099	similar to Git2 protein	Symbol and Name updated	1299863	APPROVED
2005-07-29	MGC94099	similar to Git2 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)