Dnajb12 (DnaJ heat shock protein family (Hsp40) member B12) - Rat Genome Database

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Gene: Dnajb12 (DnaJ heat shock protein family (Hsp40) member B12) Rattus norvegicus
Analyze
Symbol: Dnajb12
Name: DnaJ heat shock protein family (Hsp40) member B12
RGD ID: 1359677
Description: Predicted to enable Hsp70 protein binding activity. Predicted to be involved in several processes, including ERAD pathway; cellular response to misfolded protein; and chaperone cofactor-dependent protein refolding. Predicted to be located in endoplasmic reticulum and nuclear membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DNAJB12 (DnaJ heat shock protein family (Hsp40) member B12); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DnaJ (Hsp40) homolog, subfamily B, member 12; dnaJ homolog subfamily B member 12; LOC100362018; LOC294513; MGC94679; similar to DnaJ (Hsp40) homolog, subfamily B, member 12
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82028,371,180 - 28,389,390 (+)NCBIGRCr8
mRatBN7.22027,828,216 - 27,846,428 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2027,828,235 - 27,846,427 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2028,839,821 - 28,858,023 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02028,226,094 - 28,244,296 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02028,968,945 - 28,987,131 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02029,445,510 - 29,463,739 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2029,445,510 - 29,463,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02031,249,072 - 31,266,938 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42027,188,065 - 27,206,148 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12027,201,864 - 27,219,947 (+)NCBI
Celera2029,269,844 - 29,288,037 (+)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19946888   PMID:21148293   PMID:21150129   PMID:27916661  


Genomics

Comparative Map Data
Dnajb12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82028,371,180 - 28,389,390 (+)NCBIGRCr8
mRatBN7.22027,828,216 - 27,846,428 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2027,828,235 - 27,846,427 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2028,839,821 - 28,858,023 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02028,226,094 - 28,244,296 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02028,968,945 - 28,987,131 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02029,445,510 - 29,463,739 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2029,445,510 - 29,463,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02031,249,072 - 31,266,938 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42027,188,065 - 27,206,148 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12027,201,864 - 27,219,947 (+)NCBI
Celera2029,269,844 - 29,288,037 (+)NCBICelera
Cytogenetic Map20q11NCBI
DNAJB12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381072,332,863 - 72,354,919 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1072,332,830 - 72,355,149 (-)EnsemblGRCh38hg38GRCh38
GRCh371074,092,621 - 74,114,677 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361073,762,594 - 73,784,875 (-)NCBINCBI36Build 36hg18NCBI36
Build 341073,762,593 - 73,784,875NCBI
Celera1067,379,461 - 67,399,258 (-)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1068,086,789 - 68,109,106 (-)NCBIHuRef
CHM1_11074,374,374 - 74,396,719 (-)NCBICHM1_1
T2T-CHM13v2.01073,203,895 - 73,225,949 (-)NCBIT2T-CHM13v2.0
Dnajb12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391059,715,405 - 59,735,118 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1059,715,378 - 59,735,124 (+)EnsemblGRCm39 Ensembl
GRCm381059,879,583 - 59,899,296 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1059,879,556 - 59,899,302 (+)EnsemblGRCm38mm10GRCm38
MGSCv371059,342,339 - 59,360,764 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361059,274,948 - 59,293,373 (+)NCBIMGSCv36mm8
Celera1060,977,044 - 60,995,371 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.64NCBI
Dnajb12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543719,266,206 - 19,288,854 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543719,266,206 - 19,285,654 (+)NCBIChiLan1.0ChiLan1.0
DNAJB12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2884,480,641 - 84,503,970 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11084,485,962 - 84,508,244 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01068,852,913 - 68,875,307 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11071,319,836 - 71,341,876 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1071,319,836 - 71,341,789 (-)Ensemblpanpan1.1panPan2
DNAJB12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1422,964,098 - 22,980,291 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl422,965,967 - 22,980,292 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha423,102,398 - 23,118,625 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0423,243,979 - 23,261,880 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl423,245,766 - 23,261,871 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1423,145,129 - 23,163,017 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0423,345,955 - 23,363,911 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0423,699,654 - 23,717,628 (-)NCBIUU_Cfam_GSD_1.0
Dnajb12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721358,091,183 - 58,113,019 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365216,583,908 - 6,607,628 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365216,583,828 - 6,605,744 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJB12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1475,169,077 - 75,189,883 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11475,169,076 - 75,190,109 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21481,218,690 - 81,239,723 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJB12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1958,954,908 - 58,976,453 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl958,955,201 - 58,976,943 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604819,568,334 - 19,592,009 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajb12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247546,131,271 - 6,149,522 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247546,131,180 - 6,149,597 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnajb12
66 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:262
Count of miRNA genes:160
Interacting mature miRNAs:198
Transcripts:ENSRNOT00000044805
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat

Markers in Region
RH141822  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22027,846,086 - 27,846,305 (+)MAPPERmRatBN7.2
Rnor_6.02029,463,399 - 29,463,616NCBIRnor6.0
Rnor_5.02031,266,598 - 31,266,815UniSTSRnor5.0
RGSC_v3.42027,205,808 - 27,206,025UniSTSRGSC3.4
Celera2029,287,697 - 29,287,914UniSTS
Cytogenetic Map20q11UniSTS
UniSTS:236356  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22027,845,481 - 27,845,675 (+)MAPPERmRatBN7.2
Rnor_6.02029,462,794 - 29,462,987NCBIRnor6.0
Rnor_5.02031,265,993 - 31,266,186UniSTSRnor5.0
RGSC_v3.42027,205,203 - 27,205,396UniSTSRGSC3.4
Celera2029,287,092 - 29,287,285UniSTS
Cytogenetic Map20q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 38 57 41 19 41 8 11 74 35 41 11 8
Low 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000044805   ⟹   ENSRNOP00000049600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2027,828,235 - 27,846,427 (+)Ensembl
Rnor_6.0 Ensembl2029,445,510 - 29,463,738 (+)Ensembl
RefSeq Acc Id: NM_001013907   ⟹   NP_001013929
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,371,180 - 28,389,390 (+)NCBI
mRatBN7.22027,828,216 - 27,846,428 (+)NCBI
Rnor_6.02029,445,510 - 29,463,739 (+)NCBI
Rnor_5.02031,249,072 - 31,266,938 (+)NCBI
RGSC_v3.42027,188,065 - 27,206,148 (+)RGD
Celera2029,269,844 - 29,288,037 (+)RGD
Sequence:
RefSeq Acc Id: XM_039098616   ⟹   XP_038954544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82028,371,219 - 28,389,390 (+)NCBI
mRatBN7.22027,828,218 - 27,846,428 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001013929 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954544 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH90076 (Get FASTA)   NCBI Sequence Viewer  
  EDL93065 (Get FASTA)   NCBI Sequence Viewer  
  EDL93067 (Get FASTA)   NCBI Sequence Viewer  
  EDL93068 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000049600
  ENSRNOP00000049600.4
Reference Protein Sequences
RefSeq Acc Id: NP_001013929   ⟸   NM_001013907
- UniProtKB: Q5FVC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000049600   ⟸   ENSRNOT00000044805
RefSeq Acc Id: XP_038954544   ⟸   XM_039098616
- Peptide Label: isoform X1
- UniProtKB: F7F4L4 (UniProtKB/TrEMBL),   A6K3V6 (UniProtKB/TrEMBL)
Protein Domains
J

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVC4-F1-model_v2 AlphaFold Q5FVC4 1-378 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701593
Promoter ID:EPDNEW_R12116
Type:initiation region
Name:Dnajb12_1
Description:DnaJ heat shock protein family member B12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02029,445,537 - 29,445,597EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359677 AgrOrtholog
BioCyc Gene G2FUF-3758 BioCyc
Ensembl Genes ENSRNOG00000030408 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044805.4 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7192431 IMAGE-MGC_LOAD
InterPro DnaJ_dom_sf UniProtKB/TrEMBL
  DnaJ_N UniProtKB/TrEMBL
  DUF1977_DnaJ-like UniProtKB/TrEMBL
  Heat_shock_DnaJ_CS UniProtKB/TrEMBL
KEGG Report rno:294513 UniProtKB/TrEMBL
MGC_CLONE MGC:94679 IMAGE-MGC_LOAD
NCBI Gene 294513 ENTREZGENE
PANTHER AT29763P-RELATED UniProtKB/TrEMBL
  DNAJ HOMOLOG SUBFAMILY B MEMBER 12 UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
  DUF1977 UniProtKB/TrEMBL
PhenoGen Dnajb12 PhenoGen
PRINTS DNAJPROTEIN UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030408 RatGTEx
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP DnaJ_N UniProtKB/TrEMBL
UniProt A6K3V6 ENTREZGENE, UniProtKB/TrEMBL
  F7F4L4 ENTREZGENE, UniProtKB/TrEMBL
  Q5FVC4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Dnajb12  DnaJ heat shock protein family (Hsp40) member B12  Dnajb12  DnaJ (Hsp40) homolog, subfamily B, member 12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 Dnajb12  DnaJ (Hsp40) homolog, subfamily B, member 12  LOC100362018  DnaJ (Hsp40) homolog, subfamily B, member 12  Data merged from RGD:2318962 737654 PROVISIONAL
2010-05-05 LOC100362018  DnaJ (Hsp40) homolog, subfamily B, member 12      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-04 Dnajb12  DnaJ (Hsp40) homolog, subfamily B, member 12  LOC294513  similar to DnaJ (Hsp40) homolog, subfamily B, member 12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC294513  similar to DnaJ (Hsp40) homolog, subfamily B, member 12      Symbol and Name status set to provisional 70820 PROVISIONAL