Dnajc28 (DnaJ heat shock protein family (Hsp40) member C28)

Gene: Dnajc28 (DnaJ heat shock protein family (Hsp40) member C28) Rattus norvegicus

Analyze

Symbol:

Dnajc28

Name:

DnaJ heat shock protein family (Hsp40) member C28

RGD ID:

1359589

Description:

Orthologous to human DNAJC28 (DnaJ heat shock protein family (Hsp40) member C28); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

DnaJ (Hsp40) homolog, subfamily C, member 28; dnaJ homolog subfamily C member 28; LOC360699; similar to J domain protein C21orf55

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	44,341,528 - 44,344,348 (-)	NCBI		GRCr8
mRatBN7.2	11	30,855,566 - 30,858,386 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,853,526 - 30,858,441 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	39,549,461 - 39,552,283 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	32,220,897 - 32,223,719 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	31,386,144 - 31,388,964 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	31,770,164 - 31,772,984 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,770,165 - 31,772,984 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	35,378,903 - 35,381,723 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	31,584,546 - 31,587,366 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	31,623,609 - 31,626,429 (-)	NCBI
Celera	11	30,522,999 - 30,525,819 (-)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis type 1 (ISO)

autosomal dominant intellectual developmental disorder 7 (ISO)

genetic disease (ISO)

Parkinson's disease 20 (ISO)

ZTTK Syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,1-dichloroethene (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

amitrole (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

chloropicrin (ISO)

chromium(6+) (ISO)

clothianidin (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

dioxygen (ISO)

gentamycin (EXP)

iron dichloride (ISO)

Licochalcone B (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

silicon dioxide (ISO)

sulfadimethoxine (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

troglitazone (ISO)

urethane (ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Dnajc28
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	44,341,528 - 44,344,348 (-)	NCBI		GRCr8
mRatBN7.2	11	30,855,566 - 30,858,386 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,853,526 - 30,858,441 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	39,549,461 - 39,552,283 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	32,220,897 - 32,223,719 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	31,386,144 - 31,388,964 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	31,770,164 - 31,772,984 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,770,165 - 31,772,984 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	35,378,903 - 35,381,723 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	31,584,546 - 31,587,366 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	31,623,609 - 31,626,429 (-)	NCBI
Celera	11	30,522,999 - 30,525,819 (-)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

DNAJC28
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	33,488,055 - 33,491,716 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	33,488,055 - 33,491,716 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	34,860,362 - 34,864,023 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	33,782,108 - 33,785,893 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	33,779,706 - 33,785,650	NCBI
Celera	21	20,059,872 - 20,063,657 (-)	NCBI		Celera
Cytogenetic Map	21	q22.11	NCBI
HuRef	21	20,338,558 - 20,342,237 (-)	NCBI		HuRef
CHM1_1	21	34,422,926 - 34,426,712 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	31,869,887 - 31,873,548 (-)	NCBI		T2T-CHM13v2.0

Dnajc28
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	91,411,142 - 91,415,931 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	91,411,142 - 91,415,914 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	91,614,257 - 91,618,999 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	91,614,254 - 91,619,026 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	91,614,502 - 91,619,244 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	91,504,585 - 91,507,852 (-)	NCBI		MGSCv36	mm8
Celera	16	92,691,065 - 92,695,807 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	53.17	NCBI

Dnajc28
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	32,928,663 - 32,929,814 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	32,928,655 - 32,931,331 (-)	NCBI	ChiLan1.0	ChiLan1.0

DNAJC28
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	29,600,313 - 29,610,429 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	24,459,721 - 24,472,063 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	19,855,277 - 19,859,734 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	33,228,657 - 33,232,587 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	33,228,694 - 33,229,860 (-)	Ensembl	panpan1.1		panPan2

DNAJC28
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	28,113,339 - 28,117,705 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	28,101,274 - 28,115,460 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	28,308,485 - 28,322,743 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	28,318,372 - 28,322,491 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	28,185,232 - 28,189,613 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	28,189,061 - 28,203,254 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	28,689,189 - 28,703,416 (-)	NCBI		UU_Cfam_GSD_1.0

Dnajc28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	28,664,722 - 28,668,968 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	8,800,298 - 8,801,458 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	8,798,884 - 8,802,223 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAJC28
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	197,108,383 - 197,114,455 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	197,104,842 - 197,114,693 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	206,920,530 - 206,924,916 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNAJC28
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	58,690,499 - 58,695,302 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	58,693,679 - 58,694,848 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	1,192,277 - 1,196,741 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dnajc28
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	21,717,745 - 21,718,902 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	21,715,732 - 21,720,373 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Dnajc28
8 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	31
Count of miRNA genes:	28
Interacting mature miRNAs:	31
Transcripts:	ENSRNOT00000002771
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	1	35331169	Rat
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	1	69446234	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	1041931	66113562	Rat
1641927	Alcrsp10	Alcohol response QTL 10			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	11	8436674	53436674	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	16472047	44285911	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	18976208	86241447	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	22959403	67959403	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	23280456	68280456	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	23280456	68280456	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	27672410	82846715	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	29528418	60324829	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	29528418	82566702	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		11	2	2		2	5	7	3	10	7		5
Low	3	32	55	39	19	39	3	4	71	25	34	11	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000002771 ⟹ ENSRNOP00000002771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	30,853,743 - 30,858,417 (-)	Ensembl
Rnor_6.0 Ensembl	11	31,770,165 - 31,772,984 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118466 ⟹ ENSRNOP00000089995

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	30,853,526 - 30,858,441 (-)	Ensembl

RefSeq Acc Id:

NM_001014124 ⟹ NP_001014146

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,341,528 - 44,344,348 (-)	NCBI
mRatBN7.2	11	30,855,566 - 30,858,386 (-)	NCBI
Rnor_6.0	11	31,770,164 - 31,772,984 (-)	NCBI
Rnor_5.0	11	35,378,903 - 35,381,723 (-)	NCBI
RGSC_v3.4	11	31,584,546 - 31,587,366 (-)	RGD
Celera	11	30,522,999 - 30,525,819 (-)	RGD

Sequence:

show sequence

GGTGTCTGTCCTCTGTTCCATGGGGTATGGTTCTATAAGAAAGAGACCGCTGTCCCTGGTGAGG
GAAGCTGCCTGTCGTAGTAAGGTATGATGAGGGGCTCCACAGTGTAACGCAGCAGAGGGTCCAG
TAGCCGAGGCCAGGACGGAGCAGGCCAAGCGTCATAGCACTGGAGCAGCTTAGGCTTCGGGCCG
CTGAGCCCCCATCCGGTCTGTGAAGATCACCATTAAGAAGAATTCCAGAAACAATGGTAAACAC
AGTGTGCGCGAAGATGGCTCGGATCCTGAGACTACATCTAACAAATGCTTCCTTGATTCCTCCT
GGGGTAAAACTGCTTTCAGATCCTGGATCTAGGATGATATCAACACATAAACCCAAGGAGCTCA
GCGAATATTACAGGCTGCTGAATCTGAATGAAGGATGCTCTGCGGACAACATCAGGGAGGCTTT
TCATAGGCTTGCCAAGCAGTACCACCCAGACAGCGGCTCTGCCGACGCTGATTCTGCAACATTC
ATAAAGATTGAAGAGGCTTATAGGAATGTGCTGTCCCACGTGATAAAACAGATGCAAGCCAGAC
AGAATAAGGCGGAAGATGCAGAAGAAGAAGCAGAAAAATTCAAATATAATACACCTCAGCACCG
ACATTACTTAAGCTTCGAAGGCGTTGGCTTTGGGACTCCAAGTCAGCGAGAGAAACAATACAGA
CAGTTTAGGGCAGACCGTGCGACCGAGCAGGTGATGGAATATCAGAGGCAGAAGCTTCAGAGGG
AGTACTTCGCCAACAGCATAACTGTCAAAGACGTGTGGCAGAGCAAACAACAGAAGATAACCCA
AGCCATGGACCGCCTGGTGGAGGATCTCATCCAGGAGTCCATGGCCAAAGGAGACTTCGACAAT
CTCAGCGGGAAAGGAAAACCCCTGAAGAAGTTTTCTGGCTGTTCGTATATTGATCCCATGACTC
ACAACCTGAACCGCATATTGATAGATAACGGATACCAACCAGAGTGGATTCTGATGCAGAAGGA
AATTAAGGACACCATCGAGCAACTTCGAGAAGGTCTTTTGGTGTCGAGGAAGAAGCTTGGGAGC
CCTCTGTCACCAGTAGGGCAGAAACAATGGACCCACGTGTGTGAGCAGTTCCAAGAAGACATAC
GGAAGCTAAACAAGCGAATTAGTGATTTCAACTTGATTGTTCCCATTCTGACCAGGCAGAAAGT
CCATTTTGACGCACAGAAAGAAATTACCAGAGTCCAAGAAATATACAGGGCCTTCATAGAAGCA
AAAGAAGTCGCAGAAGACAAACAAACTGACATTAGCCAGGGAGAGGAAGAGAAAACGCCCAGCA
TCAAGGCAGGCTTTCTAAACTGGCTGAATCTGTGGAAATTTATTAAAATATGACTGTTTTGACA
TTCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001014146	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79055	(Get FASTA)	NCBI Sequence Viewer
	EDM10732	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002771.4
	ENSRNOP00000089995
	ENSRNOP00000089995.1

RefSeq Acc Id:

NP_001014146 ⟸ NM_001014124

- UniProtKB:

Q6AYG2 (UniProtKB/TrEMBL), A0A8I6ACY5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVNTVCAKMARILRLHLTNASLIPPGVKLLSDPGSRMISTHKPKELSEYYRLLNLNEGCSADNI
REAFHRLAKQYHPDSGSADADSATFIKIEEAYRNVLSHVIKQMQARQNKAEDAEEEAEKFKYNT
PQHRHYLSFEGVGFGTPSQREKQYRQFRADRATEQVMEYQRQKLQREYFANSITVKDVWQSKQQ
KITQAMDRLVEDLIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEWIL
MQKEIKDTIEQLREGLLVSRKKLGSPLSPVGQKQWTHVCEQFQEDIRKLNKRISDFNLIVPILT
RQKVHFDAQKEITRVQEIYRAFIEAKEVAEDKQTDISQGEEEKTPSIKAGFLNWLNLWKFIKI

hide sequence

RefSeq Acc Id:

ENSRNOP00000002771 ⟸ ENSRNOT00000002771

RefSeq Acc Id:

ENSRNOP00000089995 ⟸ ENSRNOT00000118466

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYG2-F1-model_v2	AlphaFold	Q6AYG2	1-383	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698058

Promoter ID:

EPDNEW_R8583

Type:

single initiation site

Name:

Dnajc28_1

Description:

DnaJ heat shock protein family member C28

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	31,773,012 - 31,773,072	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359589	AgrOrtholog
BioCyc Gene	G2FUF-21878	BioCyc
Ensembl Genes	ENSRNOG00000002026	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000002771.5	UniProtKB/TrEMBL
	ENSRNOT00000118466	ENTREZGENE
	ENSRNOT00000118466.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.110	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7115421	IMAGE-MGC_LOAD
InterPro	DnaJ_dom_sf	UniProtKB/TrEMBL
	DnaJ_homolog_subfam-C_membr-28	UniProtKB/TrEMBL
	DnaJ_N	UniProtKB/TrEMBL
KEGG Report	rno:360699	UniProtKB/TrEMBL
MGC_CLONE	MGC:93998	IMAGE-MGC_LOAD
NCBI Gene	360699	ENTREZGENE
PANTHER	DNAJ HOMOLOG SUBFAMILY C MEMBER 28	UniProtKB/TrEMBL
	OS08G0560600 PROTEIN	UniProtKB/TrEMBL
Pfam	DnaJ	UniProtKB/TrEMBL
	DUF1992	UniProtKB/TrEMBL
PhenoGen	Dnajc28	PhenoGen
PROSITE	DNAJ_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002026	RatGTEx
SMART	DnaJ	UniProtKB/TrEMBL
Superfamily-SCOP	DnaJ_N	UniProtKB/TrEMBL
UniProt	A0A8I6ACY5	ENTREZGENE, UniProtKB/TrEMBL
	Q6AYG2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Dnajc28	DnaJ heat shock protein family (Hsp40) member C28	Dnajc28	DnaJ (Hsp40) homolog, subfamily C, member 28	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-07-17	Dnajc28	DnaJ (Hsp40) homolog, subfamily C, member 28	LOC360699	similar to J domain protein C21orf55	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	LOC360699	similar to J domain protein C21orf55			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar