Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | multiple congenital anomalies-hypotonia-seizures syndrome 4 | | ISO | PIGQ (Homo sapiens) | 7240710 | | OMIM | | |
|
Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | multiple congenital anomalies-hypotonia-seizures syndrome 4 | | ISO | PIGQ (Homo sapiens) | 7240710 | | OMIM | | |
|
|
|
|
|
# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GPI1 stabilizes an enzyme essential in the first step of glycosylphosphatidylinositol biosynthesis. | Hong Y, etal., J Biol Chem 1999 Jun 25;274(26):18582-8. |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
5. | GOA pipeline | RGD automated data pipeline |
6. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
7. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
8. | Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
Pigq (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PIGQ (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pigq (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pigq (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PIGQ (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PIGQ (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pigq (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PIGQ (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PIGQ (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pigq (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Pigq
47 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH130076 |
|
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 43 | 40 | 24 | 19 | 24 | 8 | 11 | 74 | 35 | 38 | 11 | 8 |
Low | 17 | 17 | 17 | 3 | |||||||||
Below cutoff |
RefSeq Transcripts | NM_001007607 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006245942 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008767559 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017597070 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039085366 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063268570 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005489717 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC126071 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC081875 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC086517 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473948 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000010 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000027353 ⟹ ENSRNOP00000027353 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000112274 ⟹ ENSRNOP00000077777 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000113327 ⟹ ENSRNOP00000083049 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | NM_001007607 ⟹ NP_001007608 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_006245942 ⟹ XP_006246004 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
|
||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017597070 ⟹ XP_017452559 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_039085366 ⟹ XP_038941294 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_063268570 ⟹ XP_063124640 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XR_005489717 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
|
Protein RefSeqs | NP_001007608 | (Get FASTA) | NCBI Sequence Viewer |
XP_006246004 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017452559 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038941294 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063124640 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH81875 | (Get FASTA) | NCBI Sequence Viewer |
EDM03983 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000027353 | ||
ENSRNOP00000027353.3 | |||
ENSRNOP00000077777.1 | |||
ENSRNOP00000083049 | |||
ENSRNOP00000083049.1 |
RefSeq Acc Id: | NP_001007608 ⟸ NM_001007607 |
- UniProtKB: | Q642B8 (UniProtKB/TrEMBL), F7F5K8 (UniProtKB/TrEMBL), A0A8I5ZV93 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006246004 ⟸ XM_006245942 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q642B8 (UniProtKB/TrEMBL), F7F5K8 (UniProtKB/TrEMBL), A0A8I5ZV93 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017452559 ⟸ XM_017597070 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I5ZV93 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000027353 ⟸ ENSRNOT00000027353 |
RefSeq Acc Id: | XP_038941294 ⟸ XM_039085366 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q642B8 (UniProtKB/TrEMBL), F7F5K8 (UniProtKB/TrEMBL), A0A8I5ZV93 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSRNOP00000083049 ⟸ ENSRNOT00000113327 |
RefSeq Acc Id: | ENSRNOP00000077777 ⟸ ENSRNOT00000112274 |
RefSeq Acc Id: | XP_063124640 ⟸ XM_063268570 |
- Peptide Label: | isoform X2 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q642B8-F1-model_v2 | AlphaFold | Q642B8 | 1-581 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13697066 | ||||||||
Promoter ID: | EPDNEW_R7591 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Pigq_1 | ||||||||
Description: | phosphatidylinositol glycan anchor biosynthesis, class Q | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | RGD:1359535 | AgrOrtholog |
BioCyc Gene | G2FUF-25742 | BioCyc |
Ensembl Genes | ENSRNOG00000020140 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000027353 | ENTREZGENE |
ENSRNOT00000027353.5 | UniProtKB/TrEMBL | |
ENSRNOT00000112274.1 | UniProtKB/TrEMBL | |
ENSRNOT00000113327.1 | UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:7107681 | IMAGE-MGC_LOAD |
InterPro | GlcNAc_Gpi1 | UniProtKB/TrEMBL |
KEGG Report | rno:287159 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:93737 | IMAGE-MGC_LOAD |
NCBI Gene | 287159 | ENTREZGENE |
PANTHER | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Q | UniProtKB/TrEMBL |
PTHR21329 | UniProtKB/TrEMBL | |
Pfam | Gpi1 | UniProtKB/TrEMBL |
PhenoGen | Pigq | PhenoGen |
RatGTEx | ENSRNOG00000020140 | RatGTEx |
UniProt | A0A8I5ZJK7_RAT | UniProtKB/TrEMBL |
A0A8I5ZV93 | ENTREZGENE, UniProtKB/TrEMBL | |
F7F5K8 | ENTREZGENE, UniProtKB/TrEMBL | |
Q642B8 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2008-03-06 | Pigq | phosphatidylinositol glycan anchor biosynthesis, class Q | Pigq | phosphatidylinositol glycan, class Q | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2006-03-30 | Pigq | phosphatidylinositol glycan, class Q | Symbol and Name status set to approved | 1299863 | APPROVED | ||
2005-07-29 | Pigq | phosphatidylinositol glycan, class Q | Symbol and Name status set to provisional | 70820 | PROVISIONAL |