| 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | | Joint/bone inflammation | type II collagen induced | 10 | 6380753 | 100633982 | Rat |
| 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | .003 | Mammary tumor resistance | | 10 | 9762188 | 108776963 | Rat |
| 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | Glucose level | postprandial | 10 | 14721135 | 154166503 | Rat |
| 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | Joint/bone inflammation | type II collagen induced | 10 | 14721135 | 159833317 | Rat |
| 1554317 | Bmd4 | Bone mineral density QTL 4 | 9.4 | .0001 | Bone mineral density | spine volumetric BMD by pQCT | 10 | 20233281 | 104013574 | Rat |
| 61354 | Pia10 | Pristane induced arthritis QTL 10 | | .01 | Joint/bone inflammation | pristane induced | 10 | 24006429 | 160657542 | Rat |
| 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | | Joint/bone inflammation | type II collagen induced | 10 | 24006429 | 160657542 | Rat |
| 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | | .01 | Joint/bone inflammation | arthritis severity | 10 | 24006429 | 160657542 | Rat |
| 1298069 | Bp168 | Blood pressure QTL 168 | 5.5 | | Blood pressure | salt-loaded systolic | 10 | 27184741 | 102587587 | Rat |
| 631542 | Bp82 | Blood pressure QTL 82 | 6.8 | | Blood pressure | systolic | 10 | 27184741 | 103551039 | Rat |
| 61332 | Eau3 | Experimental allergic uveoretinitis QTL 3 | | .004 | Uvea inflammation score | | 10 | 35713452 | 101848683 | Rat |
| 631270 | Cia23 | Collagen induced arthritis QTL 23 | 3.9 | | Joint/bone inflammation | type II collagen induced | 10 | 41339689 | 152260081 | Rat |
| 631269 | Cia22 | Collagen induced arthritis QTL 22 | 8.9 | | Joint/bone inflammation | type II collagen induced | 10 | 41339689 | 152260081 | Rat |
| 1298078 | Stresp5 | Stress response QTL 5 | 2.99 | .00025 | Hormone level | corticosterone | 10 | 43458380 | 108776963 | Rat |
| 2300218 | Hpcl2 | Hepatic cholesterol level QTL 2 | | | Lipid level | cholesterol | 10 | 46483646 | 100090301 | Rat |
| 631530 | Tls3 | T-lymphoma susceptibility QTL 3 | 6.7 | .0001 | T-lymphoma susceptibility | propylnitrosourea induced | 10 | 53781298 | 100090301 | Rat |
| 61387 | Bp1 | Blood pressure QTL 1 | 5.1 | | Blood pressure | | 10 | 53800677 | 101848470 | Rat |
| 1549846 | Scl47 | Serum cholesterol level QTL 47 | 3.6 | | Lipid level | baseline serum cholesterol | 10 | 54091148 | 99091148 | Rat |
| 70364 | Bp72 | Blood pressure QTL 72 | | | Blood pressure | | 10 | 55633982 | 100633982 | Rat |
| 70171 | Cari1 | Carrageenan-induced inflammation QTL 1 | 4.9 | .0005 | Carrageenan-induced inflammation | exudate volume | 10 | 55851811 | 101848470 | Rat |
| 70164 | Bw21 | Body weight QTL 21 | 4.36 | .00005 | Body weight | | 10 | 55851811 | 103550924 | Rat |
| 631567 | Bp91 | Blood pressure QTL 91 | | .0001 | Blood pressure | systolic | 10 | 56848683 | 101848683 | Rat |
| 1354608 | Cm33 | Cardiac mass QTL 33 | 2.8 | | Cardiac mass | left ventricle | 10 | 56930545 | 97589703 | Rat |
| 1549831 | Bss6 | Bone structure and strength QTL 6 | 4 | | Bone strength | Lumbar vertebra L5 ultimate force | 10 | 61314296 | 106314296 | Rat |
| 2293698 | Bss43 | Bone structure and strength QTL 43 | 5.33 | .0001 | Bone structure | | 10 | 62984501 | 107984501 | Rat |
| 1576308 | Schws1 | Schwannoma susceptibility QTL 1 | | .0041 | Neural tumor susceptibility | tumor incidence, length of survival time | 10 | 63816942 | 108816942 | Rat |
| 2298548 | Neuinf7 | Neuroinflammation QTL 7 | 2.2 | | Neuroinflammation | | 10 | 65668446 | 132729388 | Rat |
| 1558643 | Cm44 | Cardiac mass QTL 44 | 4.8 | .0000368 | Cardiac mass | body weight adjusted | 10 | 67677924 | 100865886 | Rat |
| 6893336 | Cm75 | Cardiac mass QTL 75 | .1 | .87 | Cardiac mass | body weight adjusted | 10 | 67677924 | 100865886 | Rat |
| 2306970 | Anxrr22 | Anxiety related response QTL 22 | 5.95 | | Anxiety response | | 10 | 67677924 | 102796362 | Rat |
| 1359017 | Hrtrt21 | Heart rate QTL 21 | 2.4 | | Heart rate | stress-induced tachycardia | 10 | 68526078 | 101292630 | Rat |
| 1358915 | Stresp7 | Stress response QTL 7 | 3.52 | | Hormone level | norepinephrine | 10 | 68955627 | 113955627 | Rat |
| 631526 | Bp76 | Blood pressure QTL 76 | | .0001 | Blood pressure | | 10 | 69986912 | 102587587 | Rat |
| 1357344 | Bp249 | Blood pressure QTL 249 | | .0001 | Blood pressure | | 10 | 69986912 | 102587587 | Rat |
| 2317029 | Aia19 | Adjuvant induced arthritis QTL 19 | 2.98 | | Joint/bone inflammation | adjuvant induced | 10 | 70229781 | 115229781 | Rat |
| 2317039 | Aia6 | Adjuvant induced arthritis QTL 6 | 4.31 | | Joint/bone inflammation | adjuvant induced | 10 | 70229781 | 115229781 | Rat |
| 61396 | Bp9 | Blood pressure QTL 9 | 4.8 | .0001 | Blood pressure | salt-loaded systolic | 10 | 72871396 | 117871396 | Rat |
| 2293646 | Bss25 | Bone structure and strength QTL 25 | 10.96 | .0001 | Bone structure | | 10 | 74167134 | 119167134 | Rat |
| 2293663 | Bss33 | Bone structure and strength QTL 33 | 9.34 | .0001 | Bone structure | | 10 | 74167134 | 119167134 | Rat |
| 2300172 | Bmd57 | Bone mineral density QTL 57 | 9.8 | .0001 | Bone mineral density | | 10 | 74167134 | 119167134 | Rat |
| 6893366 | Bw106 | Body weight QTL 106 | .3 | .47 | Body weight | | 10 | 74652410 | 119652410 | Rat |
| 2306793 | Ean5 | Experimental allergic neuritis QTL 5 | 4.7 | | Peripheral nerve inflammation | demyelination | 10 | 76043832 | 98392296 | Rat |
| 70193 | Mcs7 | Mammary carcinoma susceptibility QTL 7 | 2.38 | | Mammary tumor susceptibility | | 10 | 76698917 | 121698917 | Rat |
| 1358188 | Ept9 | Estrogen-induced pituitary tumorigenesis QTL 9 | 3.9 | | Gland mass | pituitary | 10 | 77092169 | 100633512 | Rat |
| 2292617 | Ept18 | Estrogen-induced pituitary tumorigenesis QTL 18 | 3.9 | | Gland mass | pituitary | 10 | 77092169 | 100633512 | Rat |
| 2292438 | Bp311 | Blood pressure QTL 311 | | | Blood pressure | arterial | 10 | 79857808 | 99588446 | Rat |
| 1354641 | Bvd2 | Brain ventricular dilatation QTL 2 | 6.36 | .001 | Head/brain development | brain ventricular dilatation | 10 | 79981838 | 124981838 | Rat |
| 4889492 | Pancm2 | Pancreatic morphology QTL 2 | 3.2 | | Pancreatic morphology | | 10 | 81350126 | 126350126 | Rat |
| 1300107 | Rf18 | Renal function QTL 18 | 3.4 | | Renal function | salt-loaded urine volume | 10 | 82474813 | 102865929 | Rat |
| 6893357 | Bw102 | Body weight QTL 102 | .5 | .36 | Body weight | | 10 | 84262804 | 106479988 | Rat |
| 2303589 | Bw87 | Body weight QTL 87 | 2 | | Body weight | | 10 | 86057484 | 131057484 | Rat |
| 2317754 | Glom25 | Glomerulus QTL 25 | 3.5 | | Renal pathology | urine protein level | 10 | 86810917 | 131810917 | Rat |
| 2301398 | Kidm38 | Kidney mass QTL 38 | | .002 | Kidney mass | | 10 | 87834315 | 100429624 | Rat |
| 2306792 | Ean4 | Experimental allergic neuritis QTL 4 | 4 | | Peripheral nerve inflammation | demyelination | 10 | 87849516 | 98392508 | Rat |
| 1600367 | Mcs15 | Mammary carcinoma susceptibility QTL 15 | 4.5 | | Mammary tumor susceptibility | | 10 | 89575059 | 108822775 | Rat |
| 631538 | Oia5 | Oil induced arthritis QTL 5 | | | Joint/bone inflammation | arthritis susceptibility | 10 | 91168332 | 136168332 | Rat |
| 2313856 | Bp342 | Blood pressure QTL 342 | 4.4 | .0001 | Blood pressure | | 10 | 91455572 | 100633982 | Rat |
| 61363 | Oia3 | Oil induced arthritis QTL 3 | | .001 | Joint/bone inflammation | oil induced | 10 | 91455572 | 136455572 | Rat |
| 634320 | Niddm49 | Non-insulin dependent diabetes mellitus QTL 49 | 4.41 | | Glucose level | postprandial | 10 | 92782172 | 101848683 | Rat |
| 1579915 | Bp280 | Blood pressure QTL 280 | | .001 | Blood pressure | mean arterial pressure | 10 | 94837236 | 99588446 | Rat |
| 724530 | Bp149 | Blood pressure QTL 149 | | .0001 | Blood pressure | | 10 | 95066219 | 99588446 | Rat |
| 1300137 | Bp186 | Blood pressure QTL 186 | 3.57 | | Blood pressure | salt-loaded time series calculation | 10 | 95066219 | 140066219 | Rat |
| 1558652 | Bw57 | Body weight QTL 57 | 4.2 | .0008 | Body weight | | 10 | 95361338 | 140361338 | Rat |
| 61436 | Cia5 | Collagen induced arthritis QTL 5 | 4.9 | | Joint/bone inflammation | type II collagen induced | 10 | 95692240 | 140692240 | Rat |
| 1302404 | Cia27 | Collagen induced arthritis QTL 27 | | | Joint/bone inflammation | type II collagen induced | 10 | 95695048 | 111406914 | Rat |
| 70168 | Eae12 | Experimental allergic encephalomyelitis QTL 12 | | .0009 | Brain/spinal cord inflammation | demyelination | 10 | 96667338 | 105886241 | Rat |
| 631547 | Bp87 | Blood pressure QTL 87 | 4.5 | | Blood pressure | | 10 | 96799833 | 106897319 | Rat |