Epdr1 (ependymin related 1) - Rat Genome Database

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Gene: Epdr1 (ependymin related 1) Rattus norvegicus
Analyze
Symbol: Epdr1
Name: ependymin related 1
RGD ID: 1359161
Description: Predicted to enable ganglioside GM1 binding activity; identical protein binding activity; and phospholipid binding activity. Predicted to be involved in myofibroblast contraction. Predicted to be located in extracellular region. Predicted to be active in lysosome. Orthologous to human EPDR1 (ependymin related 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Epdr2; ependymin related protein 1; ependymin related protein 1 (zebrafish); ependymin related protein 2; ependymin related protein 2 (zebrafish); mammalian ependymin-related protein 1; MERP-1; MERP2; MGC94579; upregulated in colorectal cancer gene 1 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81750,029,591 - 50,054,254 (+)NCBIGRCr8
mRatBN7.21745,333,932 - 45,358,597 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1745,333,956 - 45,358,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1747,410,508 - 47,435,184 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01752,169,667 - 52,194,337 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01746,660,063 - 46,684,725 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01747,397,558 - 47,422,183 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1747,397,558 - 47,422,182 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01756,066,896 - 56,091,673 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41753,135,000 - 53,160,954 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11753,137,840 - 53,163,794 (+)NCBI
Celera1751,170,240 - 51,195,039 (-)NCBICelera
Cytogenetic Map17q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
extracellular region  (IEA,ISO)
lysosomal lumen  (IEA)
lysosome  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification and characterization of a novel family of mammalian ependymin-related proteins (MERPs) in hematopoietic, nonhematopoietic, and malignant tissues. Apostolopoulos J, etal., DNA Cell Biol 2001 Oct;20(10):625-35.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. MERP1: a mammalian ependymin-related protein gene differentially expressed in hematopoietic cells. Gregorio-King CC, etal., Gene 2002 Mar 20;286(2):249-57.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:16954209   PMID:23376485   PMID:24006456   PMID:29514215  


Genomics

Comparative Map Data
Epdr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81750,029,591 - 50,054,254 (+)NCBIGRCr8
mRatBN7.21745,333,932 - 45,358,597 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1745,333,956 - 45,358,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1747,410,508 - 47,435,184 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01752,169,667 - 52,194,337 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01746,660,063 - 46,684,725 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01747,397,558 - 47,422,183 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1747,397,558 - 47,422,182 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01756,066,896 - 56,091,673 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41753,135,000 - 53,160,954 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11753,137,840 - 53,163,794 (+)NCBI
Celera1751,170,240 - 51,195,039 (-)NCBICelera
Cytogenetic Map17q11NCBI
EPDR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38737,920,640 - 37,951,936 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl737,920,640 - 37,951,936 (+)EnsemblGRCh38hg38GRCh38
GRCh37737,960,242 - 37,991,538 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36737,926,688 - 37,958,068 (+)NCBINCBI36Build 36hg18NCBI36
Build 34737,733,402 - 37,764,779NCBI
Celera737,944,872 - 37,976,255 (+)NCBICelera
Cytogenetic Map7p14.1NCBI
HuRef737,840,492 - 37,871,928 (+)NCBIHuRef
CHM1_1737,960,119 - 37,991,496 (+)NCBICHM1_1
T2T-CHM13v2.0738,061,675 - 38,093,041 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2737,998,058 - 38,029,442 (+)NCBI
Epdr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391319,775,878 - 19,804,000 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1319,775,876 - 19,804,097 (-)EnsemblGRCm39 Ensembl
GRCm381319,591,708 - 19,619,830 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1319,591,706 - 19,619,927 (-)EnsemblGRCm38mm10GRCm38
MGSCv371319,683,577 - 19,711,699 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361319,599,171 - 19,627,268 (-)NCBIMGSCv36mm8
MGSCv361318,997,029 - 19,025,127 (-)NCBIMGSCv36mm8
Cytogenetic Map13A2NCBI
cM Map136.97NCBI
Epdr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554605,612,270 - 5,650,661 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554605,612,589 - 5,650,222 (-)NCBIChiLan1.0ChiLan1.0
EPDR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2642,751,394 - 42,782,711 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1791,076,129 - 91,107,446 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0738,556,734 - 38,588,059 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1738,777,919 - 38,809,208 (+)NCBIpanpan1.1PanPan1.1panPan2
EPDR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11811,989,898 - 12,013,017 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1811,990,936 - 11,992,596 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1811,631,802 - 11,658,022 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01812,258,672 - 12,284,875 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1812,258,696 - 12,284,626 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11812,076,223 - 12,102,618 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01811,996,122 - 12,022,525 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01812,223,748 - 12,250,000 (-)NCBIUU_Cfam_GSD_1.0
Epdr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511894,058,493 - 94,084,987 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647813,270,241 - 13,296,916 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647813,270,227 - 13,296,711 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPDR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9108,418,041 - 108,447,171 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19108,417,997 - 108,447,180 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29119,465,496 - 119,468,550 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPDR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12120,564,908 - 20,596,277 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2120,561,675 - 20,596,273 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660621,746,444 - 1,777,961 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epdr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474023,302,991 - 23,329,654 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474023,303,184 - 23,330,124 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Epdr1
65 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:131
Interacting mature miRNAs:157
Transcripts:ENSRNOT00000025674
Prediction methods:Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174135465160463643Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)174207316069599340Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat

Markers in Region
D17Wox29  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21745,332,057 - 45,332,213 (+)MAPPERmRatBN7.2
Rnor_6.01747,395,650 - 47,395,805NCBIRnor6.0
Rnor_5.01756,093,426 - 56,093,581UniSTSRnor5.0
RGSC_v3.41753,133,092 - 53,133,247UniSTSRGSC3.4
Celera1751,196,792 - 51,196,947UniSTS
Cytogenetic Map17q11UniSTS
RH128255  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21745,358,244 - 45,358,433 (+)MAPPERmRatBN7.2
Rnor_6.01747,421,835 - 47,422,023NCBIRnor6.0
Rnor_5.01756,067,056 - 56,067,244UniSTSRnor5.0
RGSC_v3.41753,160,606 - 53,160,794UniSTSRGSC3.4
Celera1751,170,400 - 51,170,588UniSTS
Cytogenetic Map17q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 31 12 10 2 10 8 11 66 8 3 8
Low 3 12 29 15 17 15 8 28 33 8
Below cutoff 11 11 11 7

Sequence


RefSeq Acc Id: ENSRNOT00000085923   ⟹   ENSRNOP00000073174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1745,333,965 - 45,358,594 (+)Ensembl
Rnor_6.0 Ensembl1747,397,558 - 47,422,182 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113320   ⟹   ENSRNOP00000090481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1745,333,956 - 45,358,591 (+)Ensembl
RefSeq Acc Id: NM_001007625   ⟹   NP_001007626
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81750,029,591 - 50,054,254 (+)NCBI
mRatBN7.21745,333,932 - 45,358,597 (+)NCBI
Rnor_6.01747,397,558 - 47,422,183 (+)NCBI
Rnor_5.01756,066,896 - 56,091,673 (-)NCBI
RGSC_v3.41753,135,000 - 53,160,954 (+)RGD
Celera1751,170,240 - 51,195,039 (-)RGD
Sequence:
RefSeq Acc Id: NM_001402437   ⟹   NP_001389366
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81750,029,591 - 50,054,254 (+)NCBI
mRatBN7.21745,333,932 - 45,358,597 (+)NCBI
RefSeq Acc Id: NP_001007626   ⟸   NM_001007625
- Peptide Label: isoform 1 precursor
- UniProtKB: Q5XII0 (UniProtKB/Swiss-Prot),   A6KN47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073174   ⟸   ENSRNOT00000085923
RefSeq Acc Id: ENSRNOP00000090481   ⟸   ENSRNOT00000113320
RefSeq Acc Id: NP_001389366   ⟸   NM_001402437
- Peptide Label: isoform 2 precursor
- UniProtKB: A0A8I6ADM5 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XII0-F1-model_v2 AlphaFold Q5XII0 1-224 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700502
Promoter ID:EPDNEW_R11025
Type:initiation region
Name:Epdr1_1
Description:ependymin related 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01747,397,528 - 47,397,588EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359161 AgrOrtholog
BioCyc Gene G2FUF-9146 BioCyc
Ensembl Genes ENSRNOG00000060141 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055010166 UniProtKB/Swiss-Prot
  ENSRNOG00060014480 UniProtKB/Swiss-Prot
  ENSRNOG00065021619 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000085923 ENTREZGENE
  ENSRNOT00000085923.2 UniProtKB/Swiss-Prot
  ENSRNOT00000113320 ENTREZGENE
  ENSRNOT00000113320.1 UniProtKB/TrEMBL
  ENSRNOT00055017151 UniProtKB/Swiss-Prot
  ENSRNOT00060024747 UniProtKB/Swiss-Prot
  ENSRNOT00065036761 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7190104 IMAGE-MGC_LOAD
InterPro Ependymin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:291180 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94579 IMAGE-MGC_LOAD
NCBI Gene 291180 ENTREZGENE
PANTHER MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10697 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ependymin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Epdr1 PhenoGen
PRINTS EPENDYMIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000060141 RatGTEx
  ENSRNOG00055010166 RatGTEx
  ENSRNOG00060014480 RatGTEx
  ENSRNOG00065021619 RatGTEx
SMART EPEND UniProtKB/Swiss-Prot
UniProt A0A8I6ADM5 ENTREZGENE, UniProtKB/TrEMBL
  A6KN47 ENTREZGENE, UniProtKB/TrEMBL
  EPDR1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-07 Epdr1  ependymin related 1  Epdr1  ependymin related protein 1 (zebrafish)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Epdr1  ependymin related protein 1 (zebrafish)  Epdr2  ependymin related protein 2 (zebrafish)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Epdr2  ependymin related protein 2 (zebrafish)    ependymin related protein 2  Name updated 1299863 APPROVED
2005-07-29 Epdr2  ependymin related protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL