ZBTB17 (zinc finger and BTB domain containing 17) - Rat Genome Database

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Gene: ZBTB17 (zinc finger and BTB domain containing 17) Homo sapiens
Analyze
Symbol: ZBTB17
Name: zinc finger and BTB domain containing 17
RGD ID: 1347626
HGNC Page HGNC:12936
Description: Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; transcription cis-regulatory region binding activity; and transcription coactivator binding activity. Involved in negative regulation of cell population proliferation and positive regulation of transcription by RNA polymerase II. Acts upstream of with a negative effect on G1 to G0 transition. Part of protein-DNA complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MIZ-1; myc-interacting zinc finger protein 1; Myc-interacting Zn finger protein-1; pHZ-67; zinc finger and BTB domain-containing protein 17; zinc finger protein 151 (pHZ-67); zinc finger protein 60; ZNF151; ZNF60
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,941,869 - 15,976,101 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,941,869 - 15,976,132 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,268,364 - 16,302,596 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,140,951 - 16,175,101 (-)NCBINCBI36Build 36hg18NCBI36
Build 34116,013,671 - 16,047,820NCBI
Celera114,748,238 - 14,782,515 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef114,787,372 - 14,821,661 (-)NCBIHuRef
CHM1_1116,066,899 - 16,101,159 (-)NCBICHM1_1
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1505991   PMID:1946370   PMID:7557990   PMID:8125298   PMID:9256341   PMID:9308237   PMID:9312026   PMID:11068878   PMID:11283613   PMID:11545736   PMID:12244100   PMID:12356872  
PMID:12408820   PMID:12477932   PMID:12545156   PMID:12840021   PMID:12904288   PMID:14739298   PMID:15095404   PMID:15231747   PMID:15489334   PMID:15616584   PMID:15752756   PMID:15856024  
PMID:16142238   PMID:16167342   PMID:16269333   PMID:16344560   PMID:16352593   PMID:16537485   PMID:16710414   PMID:17006541   PMID:17050536   PMID:17082179   PMID:17418410   PMID:17880999  
PMID:17947461   PMID:18451802   PMID:18923429   PMID:19160485   PMID:19164764   PMID:19274049   PMID:19419955   PMID:19549844   PMID:19786833   PMID:19815509   PMID:19901969   PMID:20308430  
PMID:20426839   PMID:20493880   PMID:20697356   PMID:21123453   PMID:21459883   PMID:21804610   PMID:21811581   PMID:21873635   PMID:21908575   PMID:22099967   PMID:22184250   PMID:22939624  
PMID:23082233   PMID:23570452   PMID:24296348   PMID:24618291   PMID:24912190   PMID:24983942   PMID:25245946   PMID:25277244   PMID:25484205   PMID:25558878   PMID:26212014   PMID:26766587  
PMID:26972249   PMID:27109891   PMID:27339797   PMID:27527891   PMID:27859590   PMID:28035002   PMID:28539603   PMID:29137325   PMID:29445930   PMID:29844126   PMID:30804502   PMID:31391242  
PMID:32296183   PMID:32814053   PMID:33057331   PMID:33660365   PMID:33914337   PMID:33961781   PMID:34145038   PMID:34305888   PMID:34373451   PMID:35205757   PMID:35563538   PMID:36538983  
PMID:37040844  


Genomics

Comparative Map Data
ZBTB17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,941,869 - 15,976,101 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,941,869 - 15,976,132 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,268,364 - 16,302,596 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,140,951 - 16,175,101 (-)NCBINCBI36Build 36hg18NCBI36
Build 34116,013,671 - 16,047,820NCBI
Celera114,748,238 - 14,782,515 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef114,787,372 - 14,821,661 (-)NCBIHuRef
CHM1_1116,066,899 - 16,101,159 (-)NCBICHM1_1
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBIT2T-CHM13v2.0
Zbtb17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394141,171,984 - 141,195,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4141,171,965 - 141,195,241 (+)EnsemblGRCm39 Ensembl
GRCm384141,444,673 - 141,467,937 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,444,654 - 141,467,930 (+)EnsemblGRCm38mm10GRCm38
MGSCv374141,000,588 - 141,023,852 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,716,760 - 140,739,305 (+)NCBIMGSCv36mm8
Celera4143,261,157 - 143,285,202 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map474.17NCBI
Zbtb17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85159,036,482 - 159,057,580 (+)NCBIGRCr8
mRatBN7.25153,753,508 - 153,774,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,753,569 - 153,774,609 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,440,859 - 156,461,960 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05158,214,147 - 158,235,248 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05158,203,320 - 158,224,423 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,993,799 - 160,014,899 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,993,799 - 160,014,895 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,713,685 - 163,734,715 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,337,988 - 160,359,060 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,348,175 - 160,369,246 (+)NCBI
Celera5152,113,183 - 152,134,155 (+)NCBICelera
Cytogenetic Map5q36NCBI
Zbtb17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555272,252,074 - 2,282,787 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555272,252,118 - 2,278,127 (+)NCBIChiLan1.0ChiLan1.0
ZBTB17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21210,944,784 - 210,977,584 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11210,193,373 - 210,226,193 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,080,880 - 15,113,676 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,074,005 - 16,106,709 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,074,005 - 16,106,700 (-)Ensemblpanpan1.1panPan2
ZBTB17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,652,015 - 81,682,647 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,652,157 - 81,682,660 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,188,685 - 78,220,088 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,297,860 - 82,329,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,297,873 - 82,329,761 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1279,051,015 - 79,083,027 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0280,069,989 - 80,101,528 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,136,103 - 81,167,412 (+)NCBIUU_Cfam_GSD_1.0
Zbtb17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505837,712,259 - 37,738,912 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,537,043 - 3,563,770 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364743,535,351 - 3,563,664 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,107,427 - 75,144,069 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1675,108,728 - 75,144,103 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZBTB17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120116,324,794 - 116,358,600 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605419,851,110 - 19,885,521 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,144,878 - 2,174,545 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247642,144,555 - 2,174,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZBTB17
33 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p36.21-36.12(chr1:15385267-20980349)x1 copy number loss See cases [RCV000051146] Chr1:15385267..20980349 [GRCh38]
Chr1:15711763..21306842 [GRCh37]
Chr1:15584350..21179429 [NCBI36]
Chr1:1p36.21-36.12
pathogenic
GRCh38/hg38 1p36.31-36.13(chr1:6853513-17326813)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051795]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051795]|See cases [RCV000051795] Chr1:6853513..17326813 [GRCh38]
Chr1:6913573..17685411 [GRCh37]
Chr1:6836160..17557998 [NCBI36]
Chr1:1p36.31-36.13
pathogenic
GRCh38/hg38 1p36.21-36.12(chr1:13110797-20670207)x3 copy number gain See cases [RCV000051797] Chr1:13110797..20670207 [GRCh38]
Chr1:13178269..20996700 [GRCh37]
Chr1:13100856..20869287 [NCBI36]
Chr1:1p36.21-36.12
pathogenic
GRCh38/hg38 1p36.21-36.13(chr1:13619979-18466172)x3 copy number gain See cases [RCV000051799] Chr1:13619979..18466172 [GRCh38]
Chr1:13946474..18792666 [GRCh37]
Chr1:13819061..18665253 [NCBI36]
Chr1:1p36.21-36.13
pathogenic
GRCh38/hg38 1p36.32-36.13(chr1:3006193-17688934)x1 copy number loss See cases [RCV000053714] Chr1:3006193..17688934 [GRCh38]
Chr1:2922757..18015429 [GRCh37]
Chr1:2912617..17888016 [NCBI36]
Chr1:1p36.32-36.13
pathogenic
GRCh38/hg38 1p36.22-36.12(chr1:10556797-22557907)x1 copy number loss See cases [RCV000053760] Chr1:10556797..22557907 [GRCh38]
Chr1:10616854..22884400 [GRCh37]
Chr1:10539441..22756987 [NCBI36]
Chr1:1p36.22-36.12
pathogenic
GRCh38/hg38 1p36.22-36.13(chr1:10621776-16520709)x1 copy number loss See cases [RCV000053763] Chr1:10621776..16520709 [GRCh38]
Chr1:10681833..16847204 [GRCh37]
Chr1:10604420..16719791 [NCBI36]
Chr1:1p36.22-36.13
pathogenic
GRCh38/hg38 1p36.22-36.13(chr1:10809039-16422500)x1 copy number loss See cases [RCV000053765] Chr1:10809039..16422500 [GRCh38]
Chr1:10869096..16748995 [GRCh37]
Chr1:10791683..16621582 [NCBI36]
Chr1:1p36.22-36.13
pathogenic
GRCh38/hg38 1p36.22-36.13(chr1:11121625-16324498)x1 copy number loss See cases [RCV000053766] Chr1:11121625..16324498 [GRCh38]
Chr1:11181682..16650993 [GRCh37]
Chr1:11104269..16523580 [NCBI36]
Chr1:1p36.22-36.13
pathogenic
GRCh38/hg38 1p36.21-36.13(chr1:15173497-18242678)x1 copy number loss See cases [RCV000053769] Chr1:15173497..18242678 [GRCh38]
Chr1:15499993..18569172 [GRCh37]
Chr1:15372580..18441759 [NCBI36]
Chr1:1p36.21-36.13
pathogenic
GRCh38/hg38 1p36.21-36.13(chr1:15173497-17019576)x1 copy number loss See cases [RCV000053771] Chr1:15173497..17019576 [GRCh38]
Chr1:15499993..17346071 [GRCh37]
Chr1:15372580..17218658 [NCBI36]
Chr1:1p36.21-36.13
pathogenic
GRCh38/hg38 1p36.23-36.13(chr1:9034671-16441465)x1 copy number loss See cases [RCV000053756] Chr1:9034671..16441465 [GRCh38]
Chr1:9094730..16767960 [GRCh37]
Chr1:9017317..16640547 [NCBI36]
Chr1:1p36.23-36.13
pathogenic
NM_003443.3(ZBTB17):c.709CAAGAGGAG[3] (p.237QEE[3]) microsatellite Primary dilated cardiomyopathy [RCV001293158] Chr1:15945137..15945138 [GRCh38]
Chr1:16271632..16271633 [GRCh37]
Chr1:1p36.13
uncertain significance
GRCh38/hg38 1p36.21-36.13(chr1:15052047-16499873)x1 copy number loss See cases [RCV000135597] Chr1:15052047..16499873 [GRCh38]
Chr1:15378543..16826368 [GRCh37]
Chr1:15251130..16698955 [NCBI36]
Chr1:1p36.21-36.13
likely pathogenic|uncertain significance
GRCh38/hg38 1p36.21-36.13(chr1:12724785-16034788)x1 copy number loss See cases [RCV000137720] Chr1:12724785..16034788 [GRCh38]
Chr1:12784752..16361283 [GRCh37]
Chr1:12707339..16233870 [NCBI36]
Chr1:1p36.21-36.13
pathogenic
GRCh38/hg38 1p36.21-36.13(chr1:15681812-19662339)x1 copy number loss See cases [RCV000138070] Chr1:15681812..19662339 [GRCh38]
Chr1:16008307..19988832 [GRCh37]
Chr1:15880894..19861419 [NCBI36]
Chr1:1p36.21-36.13
pathogenic
GRCh38/hg38 1p36.31-36.13(chr1:6554885-16056011)x3 copy number gain See cases [RCV000142906] Chr1:6554885..16056011 [GRCh38]
Chr1:6614945..16382506 [GRCh37]
Chr1:6537532..16255093 [NCBI36]
Chr1:1p36.31-36.13
pathogenic
GRCh38/hg38 1p36.31-36.13(chr1:5363826-18360302)x1 copy number loss See cases [RCV000142771] Chr1:5363826..18360302 [GRCh38]
Chr1:5423886..18686796 [GRCh37]
Chr1:5323746..18559383 [NCBI36]
Chr1:1p36.31-36.13
pathogenic
Single allele complex Breast ductal adenocarcinoma [RCV000207058] Chr1:909238..24706269 [GRCh37]
Chr1:1p36.33-36.11
uncertain significance
chr1:909238-16736132 complex variant complex Breast ductal adenocarcinoma [RCV000207094] Chr1:909238..16736132 [GRCh37]
Chr1:1p36.33-36.13
uncertain significance
GRCh37/hg19 1p36.32-36.12(chr1:2749920-22564787)x1 copy number loss See cases [RCV000446470] Chr1:2749920..22564787 [GRCh37]
Chr1:1p36.32-36.12
pathogenic
GRCh37/hg19 1p36.21-36.13(chr1:13178371-19961858)x1 copy number loss See cases [RCV000447987] Chr1:13178371..19961858 [GRCh37]
Chr1:1p36.21-36.13
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.23-36.13(chr1:8850514-16272383)x1 copy number loss See cases [RCV000512226] Chr1:8850514..16272383 [GRCh37]
Chr1:1p36.23-36.13
likely pathogenic
GRCh37/hg19 1p36.13(chr1:16217579-16496902)x3 copy number gain not provided [RCV000684552] Chr1:16217579..16496902 [GRCh37]
Chr1:1p36.13
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_003443.3(ZBTB17):c.1698-48G>A single nucleotide variant not provided [RCV001708395] Chr1:15943242 [GRCh38]
Chr1:16269737 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.2022C>G (p.Ala674=) single nucleotide variant not provided [RCV000945623] Chr1:15942545 [GRCh38]
Chr1:16269040 [GRCh37]
Chr1:1p36.13
benign
GRCh37/hg19 1p36.21-36.13(chr1:16096742-16725355)x1 copy number loss not provided [RCV000847705] Chr1:16096742..16725355 [GRCh37]
Chr1:1p36.21-36.13
uncertain significance
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1
uncertain significance
NM_003443.3(ZBTB17):c.1371+112_1371+127del deletion not provided [RCV001667287] Chr1:15944173..15944188 [GRCh38]
Chr1:16270668..16270683 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.1070+12A>G single nucleotide variant not provided [RCV001689365] Chr1:15944685 [GRCh38]
Chr1:16271180 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.621T>C (p.Ala207=) single nucleotide variant not provided [RCV001667664] Chr1:15945755 [GRCh38]
Chr1:16272250 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.1070+36G>T single nucleotide variant not provided [RCV001665976] Chr1:15944661 [GRCh38]
Chr1:16271156 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.1002C>T (p.Phe334=) single nucleotide variant not provided [RCV001688675] Chr1:15944765 [GRCh38]
Chr1:16271260 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.*21TTTA[1] microsatellite not provided [RCV001639682] Chr1:15941941..15941944 [GRCh38]
Chr1:16268436..16268439 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.-2-60G>A single nucleotide variant not provided [RCV001710757] Chr1:15948557 [GRCh38]
Chr1:16275052 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.1070+25C>T single nucleotide variant not provided [RCV001637682] Chr1:15944672 [GRCh38]
Chr1:16271167 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.536-74G>A single nucleotide variant not provided [RCV001617925] Chr1:15945914 [GRCh38]
Chr1:16272409 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.205+17G>A single nucleotide variant not provided [RCV001650719] Chr1:15948274 [GRCh38]
Chr1:16274769 [GRCh37]
Chr1:1p36.13
benign
GRCh37/hg19 1p36.21-36.12(chr1:16041431-21295864)x1 copy number loss not provided [RCV001259568] Chr1:16041431..21295864 [GRCh37]
Chr1:1p36.21-36.12
pathogenic
NM_003443.3(ZBTB17):c.1828+76dup duplication not provided [RCV001541672] Chr1:15942982..15942983 [GRCh38]
Chr1:16269477..16269478 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.395-144T>G single nucleotide variant not provided [RCV001649575] Chr1:15946438 [GRCh38]
Chr1:16272933 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.2129-37G>A single nucleotide variant not provided [RCV001686655] Chr1:15942289 [GRCh38]
Chr1:16268784 [GRCh37]
Chr1:1p36.13
benign
GRCh37/hg19 1p36.33-36.13(chr1:849466-17525065)x1 copy number loss not provided [RCV001832902] Chr1:849466..17525065 [GRCh37]
Chr1:1p36.33-36.13
pathogenic
NC_000001.10:g.(?_16096904)_(16271697_?)del deletion not provided [RCV003119472] Chr1:16096904..16271697 [GRCh37]
Chr1:1p36.21-36.13
pathogenic
NM_003443.3(ZBTB17):c.1702G>A (p.Val568Ile) single nucleotide variant Inborn genetic diseases [RCV003254383] Chr1:15943190 [GRCh38]
Chr1:16269685 [GRCh37]
Chr1:1p36.13
uncertain significance
NC_000001.10:g.4481271_20530242del deletion Chromosome 1p36 deletion syndrome [RCV003159574] Chr1:4481271..20530242 [GRCh37]
Chr1:1p36.32-36.12
pathogenic
NC_000001.11:g.10115497_16283149dup duplication not specified [RCV002286386] Chr1:10115497..16283149 [GRCh38]
Chr1:1p36.22-36.13
likely pathogenic
GRCh37/hg19 1p36.31-36.13(chr1:6758933-19287770)x1 copy number loss not provided [RCV002474779] Chr1:6758933..19287770 [GRCh37]
Chr1:1p36.31-36.13
pathogenic
NM_003443.3(ZBTB17):c.417G>C (p.Glu139Asp) single nucleotide variant Inborn genetic diseases [RCV002882972] Chr1:15946272 [GRCh38]
Chr1:16272767 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.631G>A (p.Glu211Lys) single nucleotide variant Inborn genetic diseases [RCV002973989] Chr1:15945745 [GRCh38]
Chr1:16272240 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.1625C>T (p.Ala542Val) single nucleotide variant Inborn genetic diseases [RCV002864246] Chr1:15943471 [GRCh38]
Chr1:16269966 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.490G>A (p.Asp164Asn) single nucleotide variant Inborn genetic diseases [RCV002849507] Chr1:15946199 [GRCh38]
Chr1:16272694 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.335A>T (p.Lys112Met) single nucleotide variant Inborn genetic diseases [RCV002738503] Chr1:15946994 [GRCh38]
Chr1:16273489 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.578C>T (p.Pro193Leu) single nucleotide variant Inborn genetic diseases [RCV002848645] Chr1:15945798 [GRCh38]
Chr1:16272293 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.1166G>A (p.Arg389His) single nucleotide variant Inborn genetic diseases [RCV002762052] Chr1:15944505 [GRCh38]
Chr1:16271000 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.511G>A (p.Gly171Ser) single nucleotide variant Inborn genetic diseases [RCV002887536] Chr1:15946178 [GRCh38]
Chr1:16272673 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.1872C>A (p.Asn624Lys) single nucleotide variant Inborn genetic diseases [RCV002848514] Chr1:15942695 [GRCh38]
Chr1:16269190 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.2135A>G (p.Asn712Ser) single nucleotide variant Inborn genetic diseases [RCV002757795] Chr1:15942246 [GRCh38]
Chr1:16268741 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.2030A>G (p.Gln677Arg) single nucleotide variant Inborn genetic diseases [RCV002986208] Chr1:15942537 [GRCh38]
Chr1:16269032 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.1328A>G (p.Asp443Gly) single nucleotide variant Inborn genetic diseases [RCV002891855] Chr1:15944343 [GRCh38]
Chr1:16270838 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.817G>A (p.Gly273Ser) single nucleotide variant Inborn genetic diseases [RCV002936325] Chr1:15945047 [GRCh38]
Chr1:16271542 [GRCh37]
Chr1:1p36.13
likely benign
NM_003443.3(ZBTB17):c.1597G>C (p.Val533Leu) single nucleotide variant Inborn genetic diseases [RCV003194636] Chr1:15943499 [GRCh38]
Chr1:16269994 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.1660G>A (p.Gly554Arg) single nucleotide variant Inborn genetic diseases [RCV003195154] Chr1:15943436 [GRCh38]
Chr1:16269931 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.2222C>T (p.Ala741Val) single nucleotide variant Inborn genetic diseases [RCV003209948] Chr1:15942159 [GRCh38]
Chr1:16268654 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.563C>T (p.Ala188Val) single nucleotide variant Inborn genetic diseases [RCV003180450] Chr1:15945813 [GRCh38]
Chr1:16272308 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.404A>G (p.Lys135Arg) single nucleotide variant Inborn genetic diseases [RCV003302638] Chr1:15946285 [GRCh38]
Chr1:16272780 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.505C>T (p.Arg169Cys) single nucleotide variant Inborn genetic diseases [RCV003361457] Chr1:15946184 [GRCh38]
Chr1:16272679 [GRCh37]
Chr1:1p36.13
uncertain significance
NM_003443.3(ZBTB17):c.1013A>G (p.Glu338Gly) single nucleotide variant Inborn genetic diseases [RCV003376267] Chr1:15944754 [GRCh38]
Chr1:16271249 [GRCh37]
Chr1:1p36.13
uncertain significance
GRCh38/hg38 1p36.33-35.1(chr1:99125-34026935)x3 copy number gain Trisomy 12p [RCV003447845] Chr1:99125..34026935 [GRCh38]
Chr1:1p36.33-35.1
pathogenic
GRCh37/hg19 1p36.21-36.12(chr1:16194137-20561434)x1 copy number loss not specified [RCV003986551] Chr1:16194137..20561434 [GRCh37]
Chr1:1p36.21-36.12
pathogenic
NM_003443.3(ZBTB17):c.395-17C>T single nucleotide variant ZBTB17-related condition [RCV003919870] Chr1:15946311 [GRCh38]
Chr1:16272806 [GRCh37]
Chr1:1p36.13
benign
NM_003443.3(ZBTB17):c.507C>T (p.Arg169=) single nucleotide variant ZBTB17-related condition [RCV003914282] Chr1:15946182 [GRCh38]
Chr1:16272677 [GRCh37]
Chr1:1p36.13
likely benign
NM_003443.3(ZBTB17):c.395-30A>G single nucleotide variant ZBTB17-related condition [RCV003934626] Chr1:15946324 [GRCh38]
Chr1:16272819 [GRCh37]
Chr1:1p36.13
likely benign
NM_003443.3(ZBTB17):c.432C>T (p.Thr144=) single nucleotide variant ZBTB17-related condition [RCV003904129] Chr1:15946257 [GRCh38]
Chr1:16272752 [GRCh37]
Chr1:1p36.13
likely benign
NM_003443.3(ZBTB17):c.2232G>A (p.Leu744=) single nucleotide variant ZBTB17-related condition [RCV003974204] Chr1:15942149 [GRCh38]
Chr1:16268644 [GRCh37]
Chr1:1p36.13
likely benign
NM_003443.3(ZBTB17):c.1372-4A>G single nucleotide variant ZBTB17-related condition [RCV003964377] Chr1:15943899 [GRCh38]
Chr1:16270394 [GRCh37]
Chr1:1p36.13
likely benign
NM_003443.3(ZBTB17):c.2128+9G>A single nucleotide variant ZBTB17-related condition [RCV003941810] Chr1:15942322 [GRCh38]
Chr1:16268817 [GRCh37]
Chr1:1p36.13
likely benign
NM_003443.3(ZBTB17):c.624A>G (p.Ala208=) single nucleotide variant ZBTB17-related condition [RCV003934365] Chr1:15945752 [GRCh38]
Chr1:16272247 [GRCh37]
Chr1:1p36.13
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5457
Count of miRNA genes:1046
Interacting mature miRNAs:1328
Transcripts:ENST00000375733, ENST00000375743, ENST00000440560, ENST00000444358, ENST00000448462, ENST00000462525, ENST00000464719, ENST00000471805, ENST00000472658, ENST00000474511, ENST00000479282, ENST00000487785, ENST00000488008, ENST00000490899, ENST00000492834, ENST00000494020, ENST00000537142
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-31102  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,280,445 - 16,280,594UniSTSGRCh37
Build 36116,153,032 - 16,153,181RGDNCBI36
Celera114,760,319 - 14,760,468RGD
Cytogenetic Map1p36.13UniSTS
HuRef114,799,453 - 14,799,602UniSTS
TNG Radiation Hybrid Map123511.0UniSTS
GeneMap99-GB4 RH Map156.67UniSTS
Whitehead-RH Map155.1UniSTS
GeneMap99-G3 RH Map1816.0UniSTS
D1S1336  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,288,006 - 16,288,197UniSTSGRCh37
Build 36116,160,593 - 16,160,784RGDNCBI36
Celera114,767,880 - 14,768,071RGD
Cytogenetic Map1p36.13UniSTS
HuRef114,807,018 - 14,807,209UniSTS
ZBTB17_8746  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,268,169 - 16,268,742UniSTSGRCh37
Build 36116,140,756 - 16,141,329RGDNCBI36
Celera114,748,043 - 14,748,616RGD
HuRef114,787,177 - 14,787,750UniSTS
SHGC-74246  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,268,372 - 16,268,498UniSTSGRCh37
Build 36116,140,959 - 16,141,085RGDNCBI36
Celera114,748,246 - 14,748,372RGD
Cytogenetic Map1p36.13UniSTS
HuRef114,787,380 - 14,787,506UniSTS
TNG Radiation Hybrid Map123529.0UniSTS
GeneMap99-GB4 RH Map156.57UniSTS
A005O01  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,268,372 - 16,268,498UniSTSGRCh37
Build 36116,140,959 - 16,141,085RGDNCBI36
Celera114,748,246 - 14,748,372RGD
Cytogenetic Map1p36.13UniSTS
HuRef114,787,380 - 14,787,506UniSTS
GeneMap99-GB4 RH Map156.87UniSTS
RH64190  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,268,369 - 16,268,497UniSTSGRCh37
Build 36116,140,956 - 16,141,084RGDNCBI36
Celera114,748,243 - 14,748,371RGD
Cytogenetic Map1p36.13UniSTS
HuRef114,787,377 - 14,787,505UniSTS
GeneMap99-GB4 RH Map156.67UniSTS
RH70580  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,268,600 - 16,268,884UniSTSGRCh37
Build 36116,141,187 - 16,141,471RGDNCBI36
Celera114,748,474 - 14,748,758RGD
Cytogenetic Map1p36.13UniSTS
HuRef114,787,608 - 14,787,892UniSTS
GeneMap99-GB4 RH Map154.76UniSTS
STS-AA013259  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,270,260 - 16,270,881UniSTSGRCh37
Celera114,750,134 - 14,750,755UniSTS
Cytogenetic Map1p36.13UniSTS
HuRef114,789,268 - 14,789,889UniSTS
GeneMap99-GB4 RH Map156.57UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2361 2220 1369 272 1769 120 4059 1545 2926 278 1433 1576 165 1180 2509 3
Low 74 769 356 351 181 345 297 651 807 140 23 33 10 1 24 279 2 1
Below cutoff 1 1 1 1 3 3 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001242884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001324137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001324138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005245986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005245987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017002242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054338630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054338631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054338632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054338633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK223618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK226168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK299820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL034555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL355994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC126163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC143965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC143968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ575263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU634371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB064089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M88369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U20647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y09723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000375733   ⟹   ENSP00000364885
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,941,871 - 15,976,132 (-)Ensembl
RefSeq Acc Id: ENST00000375743   ⟹   ENSP00000364895
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,941,869 - 15,976,101 (-)Ensembl
RefSeq Acc Id: ENST00000440560   ⟹   ENSP00000400827
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,941,869 - 15,943,089 (-)Ensembl
RefSeq Acc Id: ENST00000444358   ⟹   ENSP00000408483
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,942,407 - 15,944,428 (-)Ensembl
RefSeq Acc Id: ENST00000462525
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,941,869 - 15,942,722 (-)Ensembl
RefSeq Acc Id: ENST00000464719
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,945,721 - 15,947,292 (-)Ensembl
RefSeq Acc Id: ENST00000471805
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,943,240 - 15,944,358 (-)Ensembl
RefSeq Acc Id: ENST00000472658
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,943,257 - 15,943,926 (-)Ensembl
RefSeq Acc Id: ENST00000474511
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,943,429 - 15,944,393 (-)Ensembl
RefSeq Acc Id: ENST00000479282
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,945,846 - 15,976,104 (-)Ensembl
RefSeq Acc Id: ENST00000487785
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,943,599 - 15,944,403 (-)Ensembl
RefSeq Acc Id: ENST00000488008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,942,756 - 15,943,384 (-)Ensembl
RefSeq Acc Id: ENST00000490899
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,944,988 - 15,947,105 (-)Ensembl
RefSeq Acc Id: ENST00000492834
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,944,417 - 15,946,084 (-)Ensembl
RefSeq Acc Id: ENST00000494020
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,945,933 - 15,952,973 (-)Ensembl
RefSeq Acc Id: ENST00000537142   ⟹   ENSP00000438529
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,941,871 - 15,976,079 (-)Ensembl
RefSeq Acc Id: NM_001242884   ⟹   NP_001229813
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,941,869 - 15,976,101 (-)NCBI
GRCh37116,268,364 - 16,302,627 (-)NCBI
HuRef114,787,372 - 14,821,661 (-)ENTREZGENE
CHM1_1116,066,899 - 16,101,159 (-)NCBI
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001287603   ⟹   NP_001274532
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,941,869 - 15,976,101 (-)NCBI
HuRef114,787,372 - 14,821,661 (-)NCBI
CHM1_1116,066,899 - 16,101,159 (-)NCBI
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001287604   ⟹   NP_001274533
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,941,869 - 15,976,101 (-)NCBI
HuRef114,787,372 - 14,821,661 (-)NCBI
CHM1_1116,066,899 - 16,101,159 (-)NCBI
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001324137   ⟹   NP_001311066
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,941,869 - 15,976,101 (-)NCBI
CHM1_1116,066,899 - 16,101,159 (-)NCBI
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001324138   ⟹   NP_001311067
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,941,869 - 15,976,101 (-)NCBI
CHM1_1116,066,899 - 16,101,159 (-)NCBI
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBI
Sequence:
RefSeq Acc Id: NM_003443   ⟹   NP_003434
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,941,869 - 15,976,101 (-)NCBI
GRCh37116,268,364 - 16,302,627 (-)ENTREZGENE
GRCh37116,268,364 - 16,302,627 (-)NCBI
Build 36116,140,951 - 16,175,101 (-)NCBI Archive
HuRef114,787,372 - 14,821,661 (-)ENTREZGENE
CHM1_1116,066,899 - 16,101,159 (-)NCBI
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005245986   ⟹   XP_005246043
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,941,869 - 15,976,101 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011542085   ⟹   XP_011540387
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,941,869 - 15,976,101 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011542087   ⟹   XP_011540389
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,941,869 - 15,976,101 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047429978   ⟹   XP_047285934
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,941,869 - 15,948,378 (-)NCBI
RefSeq Acc Id: XM_054338630   ⟹   XP_054194605
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBI
RefSeq Acc Id: XM_054338631   ⟹   XP_054194606
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBI
RefSeq Acc Id: XM_054338632   ⟹   XP_054194607
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0115,383,149 - 15,389,658 (-)NCBI
RefSeq Acc Id: XM_054338633   ⟹   XP_054194608
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001229813 (Get FASTA)   NCBI Sequence Viewer  
  NP_001274532 (Get FASTA)   NCBI Sequence Viewer  
  NP_001274533 (Get FASTA)   NCBI Sequence Viewer  
  NP_001311066 (Get FASTA)   NCBI Sequence Viewer  
  NP_001311067 (Get FASTA)   NCBI Sequence Viewer  
  NP_003434 (Get FASTA)   NCBI Sequence Viewer  
  XP_005246043 (Get FASTA)   NCBI Sequence Viewer  
  XP_011540387 (Get FASTA)   NCBI Sequence Viewer  
  XP_011540389 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285934 (Get FASTA)   NCBI Sequence Viewer  
  XP_054194605 (Get FASTA)   NCBI Sequence Viewer  
  XP_054194606 (Get FASTA)   NCBI Sequence Viewer  
  XP_054194607 (Get FASTA)   NCBI Sequence Viewer  
  XP_054194608 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA61327 (Get FASTA)   NCBI Sequence Viewer  
  AAC50256 (Get FASTA)   NCBI Sequence Viewer  
  AAI26164 (Get FASTA)   NCBI Sequence Viewer  
  AAI43966 (Get FASTA)   NCBI Sequence Viewer  
  BAD97338 (Get FASTA)   NCBI Sequence Viewer  
  BAG37639 (Get FASTA)   NCBI Sequence Viewer  
  BAG57917 (Get FASTA)   NCBI Sequence Viewer  
  BAG61689 (Get FASTA)   NCBI Sequence Viewer  
  BAG63326 (Get FASTA)   NCBI Sequence Viewer  
  BAG63857 (Get FASTA)   NCBI Sequence Viewer  
  BAG64771 (Get FASTA)   NCBI Sequence Viewer  
  CAA70889 (Get FASTA)   NCBI Sequence Viewer  
  EAW51757 (Get FASTA)   NCBI Sequence Viewer  
  EAW51758 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000364885
  ENSP00000364885.2
  ENSP00000364895
  ENSP00000364895.4
  ENSP00000400827.1
  ENSP00000408483.1
  ENSP00000438529
  ENSP00000438529.1
GenBank Protein Q13105 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001229813   ⟸   NM_001242884
- Peptide Label: isoform 1
- UniProtKB: B2RCP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_003434   ⟸   NM_003443
- Peptide Label: isoform 2
- UniProtKB: Q5JYB2 (UniProtKB/Swiss-Prot),   Q15932 (UniProtKB/Swiss-Prot),   F5H411 (UniProtKB/Swiss-Prot),   B7ZLQ9 (UniProtKB/Swiss-Prot),   B4DXB4 (UniProtKB/Swiss-Prot),   A0AV07 (UniProtKB/Swiss-Prot),   Q9NUC9 (UniProtKB/Swiss-Prot),   Q13105 (UniProtKB/Swiss-Prot),   B2RCP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005246043   ⟸   XM_005245986
- Peptide Label: isoform X1
- UniProtKB: B4E1F9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274533   ⟸   NM_001287604
- Peptide Label: isoform 4
- UniProtKB: B2RCP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274532   ⟸   NM_001287603
- Peptide Label: isoform 3
- UniProtKB: B2RCP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011540387   ⟸   XM_011542085
- Peptide Label: isoform X2
- UniProtKB: B2RCP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011540389   ⟸   XM_011542087
- Peptide Label: isoform X3
- UniProtKB: B2RCP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001311066   ⟸   NM_001324137
- Peptide Label: isoform 4
- UniProtKB: B2RCP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001311067   ⟸   NM_001324138
- Peptide Label: isoform 5
- UniProtKB: B4E1F9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000364885   ⟸   ENST00000375733
RefSeq Acc Id: ENSP00000364895   ⟸   ENST00000375743
RefSeq Acc Id: ENSP00000400827   ⟸   ENST00000440560
RefSeq Acc Id: ENSP00000408483   ⟸   ENST00000444358
RefSeq Acc Id: ENSP00000438529   ⟸   ENST00000537142
RefSeq Acc Id: XP_047285934   ⟸   XM_047429978
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054194606   ⟸   XM_054338631
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054194608   ⟸   XM_054338633
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054194605   ⟸   XM_054338630
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054194607   ⟸   XM_054338632
- Peptide Label: isoform X2
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q13105-F1-model_v2 AlphaFold Q13105 1-803 view protein structure

Promoters
RGD ID:6854232
Promoter ID:EPDNEW_H281
Type:initiation region
Name:ZBTB17_1
Description:zinc finger and BTB domain containing 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,976,079 - 15,976,139EPDNEW
RGD ID:6787250
Promoter ID:HG_KWN:906
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000026004,   OTTHUMT00000026005,   OTTHUMT00000026006,   OTTHUMT00000026007,   OTTHUMT00000026008,   OTTHUMT00000026009,   OTTHUMT00000026010,   OTTHUMT00000026011
Position:
Human AssemblyChrPosition (strand)Source
Build 36116,141,431 - 16,144,057 (-)MPROMDB
RGD ID:6787251
Promoter ID:HG_KWN:907
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000026003
Position:
Human AssemblyChrPosition (strand)Source
Build 36116,144,841 - 16,145,457 (-)MPROMDB
RGD ID:6787248
Promoter ID:HG_KWN:908
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000026001,   OTTHUMT00000026002
Position:
Human AssemblyChrPosition (strand)Source
Build 36116,146,091 - 16,147,272 (-)MPROMDB
RGD ID:6787249
Promoter ID:HG_KWN:909
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   NB4
Transcripts:OTTHUMT00000025999
Position:
Human AssemblyChrPosition (strand)Source
Build 36116,151,724 - 16,152,224 (-)MPROMDB
RGD ID:6785176
Promoter ID:HG_KWN:911
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000375729,   ENST00000375733,   NM_003443,   OTTHUMT00000026000,   UC009VOM.1,   UC009VON.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36116,174,949 - 16,175,449 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12936 AgrOrtholog
COSMIC ZBTB17 COSMIC
Ensembl Genes ENSG00000116809 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000375733 ENTREZGENE
  ENST00000375733.6 UniProtKB/Swiss-Prot
  ENST00000375743 ENTREZGENE
  ENST00000375743.9 UniProtKB/Swiss-Prot
  ENST00000440560.5 UniProtKB/TrEMBL
  ENST00000444358.1 UniProtKB/TrEMBL
  ENST00000537142 ENTREZGENE
  ENST00000537142.5 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000116809 GTEx
HGNC ID HGNC:12936 ENTREZGENE
Human Proteome Map ZBTB17 Human Proteome Map
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:7709 UniProtKB/Swiss-Prot
NCBI Gene 7709 ENTREZGENE
OMIM 604084 OMIM
PANTHER KRUEPPEL-LIKE FACTOR 15 UniProtKB/TrEMBL
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 60-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37522 PharmGKB
PROSITE BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0AV07 ENTREZGENE
  B2RCP2 ENTREZGENE, UniProtKB/TrEMBL
  B4DXB4 ENTREZGENE
  B4E1F9 ENTREZGENE, UniProtKB/TrEMBL
  B7ZLQ9 ENTREZGENE
  F5H411 ENTREZGENE
  H0Y6X2_HUMAN UniProtKB/TrEMBL
  H7C1K8_HUMAN UniProtKB/TrEMBL
  Q13105 ENTREZGENE
  Q15932 ENTREZGENE
  Q53EM1_HUMAN UniProtKB/TrEMBL
  Q5JYB2 ENTREZGENE
  Q9NUC9 ENTREZGENE
  ZBT17_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A0AV07 UniProtKB/Swiss-Prot
  B4DXB4 UniProtKB/Swiss-Prot
  B7ZLQ9 UniProtKB/Swiss-Prot
  F5H411 UniProtKB/Swiss-Prot
  Q15932 UniProtKB/Swiss-Prot
  Q5JYB2 UniProtKB/Swiss-Prot
  Q9NUC9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-31 ZBTB17  zinc finger and BTB domain containing 17  ZNF60  zinc finger protein 60  Data merged from RGD:1349599 737654 PROVISIONAL