Annotation (Toggle Detail/Summary View) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Gene Ontology AnnotationsBiological Process Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | antigen processing and presentation | | IEA | InterPro:IPR001039|InterPro:IPR011161 | 2290271 | GO_REF:0000002 | InterPro | GO_REF:0000002 | antigen processing and presentation of exogenous peptide antigen via MHC class I | | TAS | | 2290271 | Reactome:REACT_111119 | Reactome | Reactome:REACT_111119 | antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent | | TAS | | 2290271 | Reactome:REACT_111178 | Reactome | Reactome:REACT_111178 | antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent | | TAS | | 2290271 | Reactome:REACT_111168 | Reactome | Reactome:REACT_111168 | antigen processing and presentation of peptide antigen via MHC class I | | TAS | | 2290271 | Reactome:REACT_75820 | Reactome | Reactome:REACT_75820 | cytokine-mediated signaling pathway | | TAS | | 2290271 | Reactome:REACT_25229 | Reactome | Reactome:REACT_25229 | immune response | | IEA | InterPro:IPR001039|InterPro:IPR011161 | 2290271 | GO_REF:0000002 | InterPro | GO_REF:0000002 | interferon-gamma-mediated signaling pathway | | TAS | | 2290271 | Reactome:REACT_25078 | Reactome | Reactome:REACT_25078 | regulation of immune response | | TAS | | 2290271 | Reactome:REACT_11152 | Reactome | Reactome:REACT_11152 | type I interferon-mediated signaling pathway | | TAS | | 2290271 | Reactome:REACT_25162 | Reactome | Reactome:REACT_25162 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Pathway Annotations
Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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| External Database Links | |
| KEGG Pathway | Allograft rejection |
| Antigen processing and presentation | |
| Autoimmune thyroid disease | |
| Cell adhesion molecules (CAMs) | |
| Endocytosis | |
| Epstein-Barr virus infection | |
| Graft-versus-host disease | |
| Herpes simplex infection | |
| HTLV-I infection | |
| Natural killer cell mediated cytotoxicity | |
| Phagosome | |
| Type I diabetes mellitus | |
| Viral carcinogenesis | |
| Viral myocarditis | |
References - curated| 1. |
GOA_HUMAN data from the GO Consortium |
| 2. |
Pipeline to import KEGG annotations from KEGG into RGD Pathway Ontology |
| 3. |
RGD automated import pipeline for gene-chemical interactions |
References - uncurated| PubMed | 10366557 |
| 10546855 | |
| 10605026 | |
| 10684310 | |
| 10707087 | |
| 10727083 | |
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RGD Disease Portals| HLA-F has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| HLA-F (Homo sapiens) |
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| Gm11127 (Mus musculus) |
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Position Markers| RH71004 |
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| D6S2269 |
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| STS-R00280 |
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| RF |
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QTLs in Region (Human Genome Assembly GRCh37)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NG_012009 | (Get FASTA) | Search GEO for Microarray Profiles |
| NM_001098478 | (Get FASTA) | Search GEO for Microarray Profiles | |
| NM_001098479 | (Get FASTA) | Search GEO for Microarray Profiles | |
| NM_018950 | (Get FASTA) | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AB011820 | (Get FASTA) | Search GEO for Microarray Profiles |
| AB088082 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AB103588 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AB201549 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01038036 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF055066 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523284 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523285 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523286 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523287 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523288 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523289 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523290 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523291 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523292 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523293 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523294 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523295 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523296 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF523297 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK096962 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK125274 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK225185 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK298704 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK300090 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK301488 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK302420 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK303670 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK309156 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL022723 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL645939 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL669813 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL844851 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AMYH01016197 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY216682 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY221102 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY253269 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY253270 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY253271 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY328516 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645742 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645743 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645744 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645745 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645746 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645747 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645748 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645749 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645750 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645751 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645752 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645753 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645754 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645755 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645756 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645757 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645758 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY645759 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BA000025 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC009260 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC062991 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BM798587 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BX005428 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BX927250 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CA436948 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CB528356 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CD365590 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CD369507 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH471081 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CR753818 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CR759790 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CT002787 | (Get FASTA) | Search GEO for Microarray Profiles | |
| D78595 | (Get FASTA) | Search GEO for Microarray Profiles | |
| DQ367723 | (Get FASTA) | Search GEO for Microarray Profiles | |
| GQ891552 | (Get FASTA) | Search GEO for Microarray Profiles | |
| X17093 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_001098479 | |||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_001091949 | |||||||||||||||||||||||||
| Peptide Label: | isoform 1 precursor | |||||||||||||||||||||||||
| Position: |
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| RefSeq Acc Id: | NM_018950 | |||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_061823 | |||||||||||||||||||||||||
| Peptide Label: | isoform 2 precursor | |||||||||||||||||||||||||
| Position: |
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| RefSeq Acc Id: | NM_001098478 | |||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_001091948 | |||||||||||||||||||||||||
| Peptide Label: | isoform 3 precursor | |||||||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_001091948 | (Get FASTA) |
| NP_001091949 | (Get FASTA) | |
| NP_061823 | (Get FASTA) | |
| GenBank Protein | AAC24827 | (Get FASTA) |
| AAH09260 | (Get FASTA) | |
| AAH62991 | (Get FASTA) | |
| AAM74979 | (Get FASTA) | |
| AAM74980 | (Get FASTA) | |
| AAM74981 | (Get FASTA) | |
| AAM74982 | (Get FASTA) | |
| AAM74983 | (Get FASTA) | |
| AAM74984 | (Get FASTA) | |
| AAM74985 | (Get FASTA) | |
| AAM74986 | (Get FASTA) | |
| AAM74987 | (Get FASTA) | |
| AAM74988 | (Get FASTA) | |
| AAM74989 | (Get FASTA) | |
| AAM74990 | (Get FASTA) | |
| AAM74991 | (Get FASTA) | |
| AAM74992 | (Get FASTA) | |
| AAO34407 | (Get FASTA) | |
| AAO37689 | (Get FASTA) | |
| AAO86773 | (Get FASTA) | |
| AAO86774 | (Get FASTA) | |
| AAO86775 | (Get FASTA) | |
| AAP94210 | (Get FASTA) | |
| AAT73225 | (Get FASTA) | |
| AAT73226 | (Get FASTA) | |
| AAT73227 | (Get FASTA) | |
| AAT73228 | (Get FASTA) | |
| AAT73229 | (Get FASTA) | |
| AAT73230 | (Get FASTA) | |
| AAT73231 | (Get FASTA) | |
| AAT73232 | (Get FASTA) | |
| AAT73233 | (Get FASTA) | |
| AAT73234 | (Get FASTA) | |
| AAT73235 | (Get FASTA) | |
| AAT73236 | (Get FASTA) | |
| AAT73237 | (Get FASTA) | |
| AAT73238 | (Get FASTA) | |
| AAT73239 | (Get FASTA) | |
| AAT73240 | (Get FASTA) | |
| AAT73241 | (Get FASTA) | |
| AAT73242 | (Get FASTA) | |
| ABD38924 | (Get FASTA) | |
| ACX50639 | (Get FASTA) | |
| BAA32747 | (Get FASTA) | |
| BAB63337 | (Get FASTA) | |
| BAC54915 | (Get FASTA) | |
| BAC86108 | (Get FASTA) | |
| BAE78596 | (Get FASTA) | |
| BAF31252 | (Get FASTA) | |
| BAG53400 | (Get FASTA) | |
| BAG60861 | (Get FASTA) | |
| BAG61893 | (Get FASTA) | |
| BAG63725 | (Get FASTA) | |
| BAG64668 | (Get FASTA) | |
| BAH13496 | (Get FASTA) | |
| CAA34947 | (Get FASTA) | |
| CAB46623 | (Get FASTA) | |
| CAI20359 | (Get FASTA) | |
| CAI20360 | (Get FASTA) | |
| EAX03223 | (Get FASTA) | |
| EAX03224 | (Get FASTA) | |
| EAX03225 | (Get FASTA) | |
| EAX03226 | (Get FASTA) | |
| EAX03227 | (Get FASTA) | |
| P30511 | (Get FASTA) |
Promoters| RGD ID: | 6804350 | ||||||||||
| Promoter ID: | HG_KWN:52759 | ||||||||||
| Type: | CpG-Island | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | CD4+TCell, CD4+TCell_12Hour, K562, Lymphoblastoid | ||||||||||
| Transcripts: | ENST00000376844, ENST00000376861, ENST00000399258, NM_001098478, NM_001098479, NM_018950, OTTHUMT00000195086, OTTHUMT00000195088, OTTHUMT00000195089, OTTHUMT00000195090, OTTHUMT00000195091, OTTHUMT00000195092, OTTHUMT00000195093, OTTHUMT00000195094 | ||||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| COSMIC | HLA-F | COSMIC |
| Ensembl Genes | ENSG00000204642 | ENTREZGENE |
| Ensembl Protein | ENSP00000259951 | ENTREZGENE |
| ENSP00000334263 | ENTREZGENE | |
| ENSP00000397376 | ENTREZGENE | |
| Ensembl Transcript | ENST00000259951 | ENTREZGENE |
| ENST00000334668 | ENTREZGENE | |
| ENST00000434407 | ENTREZGENE | |
| Entrez Gene | 3134 | ENTREZGENE |
| Gene3D-CATH | Ig-like_fold | UniProtKB/Swiss-Prot |
| MHC_I-like_Ag-recog | UniProtKB/Swiss-Prot | |
| HGNC ID | 4963 | ENTREZGENE |
| HPRD ID | 00884 | ENTREZGENE |
| InterPro | Ig-like | UniProtKB/Swiss-Prot |
| Ig-like_fold | UniProtKB/Swiss-Prot | |
| Ig/MHC_CS | UniProtKB/Swiss-Prot | |
| Ig_C1-set | UniProtKB/Swiss-Prot | |
| MHC_I-like_Ag-recog | UniProtKB/Swiss-Prot | |
| MHC_I/II-like_Ag-recog | UniProtKB/Swiss-Prot | |
| MHC_I_a_a1/a2 | UniProtKB/Swiss-Prot | |
| IPI | IPI00657681 | UniProtKB/TrEMBL |
| IPI00871578 | UniProtKB/TrEMBL | |
| IPI00893670 | UniProtKB/TrEMBL | |
| IPI00936104 | UniProtKB/Swiss-Prot | |
| IPI00942068 | UniProtKB/Swiss-Prot | |
| IPI00953287 | UniProtKB/TrEMBL | |
| IPI00973471 | UniProtKB/Swiss-Prot | |
| IPI00973577 | UniProtKB/TrEMBL | |
| IPI00980648 | UniProtKB/TrEMBL | |
| IPI01018860 | UniProtKB/TrEMBL | |
| KEGG Report | hsa:3134 | ENTREZGENE, UniProtKB/Swiss-Prot |
| OMIM | 143110 | OMIM |
| Pfam | C1-set | UniProtKB/Swiss-Prot |
| MHC_I | UniProtKB/Swiss-Prot | |
| PharmGKB | PA35082 | PharmGKB |
| PRINTS | MHCCLASSI | UniProtKB/Swiss-Prot |
| PROSITE | IG_LIKE | UniProtKB/Swiss-Prot |
| IG_MHC | UniProtKB/Swiss-Prot | |
| SMART | IGc1 | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | MHC_I/II-like_Ag-recog | UniProtKB/Swiss-Prot |
| UniGene | Hs.519972 | ENTREZGENE |
| UniProt | B1AZU4_HUMAN | UniProtKB/TrEMBL |
| B4DT81_HUMAN | UniProtKB/TrEMBL | |
| B7Z760_HUMAN | UniProtKB/TrEMBL | |
| D0EV57_HUMAN | UniProtKB/TrEMBL | |
| E9PGX5_HUMAN | UniProtKB/TrEMBL | |
| F6T2Q8_HUMAN | UniProtKB/TrEMBL | |
| H0Y4J4_HUMAN | UniProtKB/TrEMBL | |
| H0Y842_HUMAN | UniProtKB/TrEMBL | |
| HLAF_HUMAN | UniProtKB/Swiss-Prot | |
| Q5JZ48_HUMAN | UniProtKB/TrEMBL | |
| Q5SPT7_HUMAN | UniProtKB/TrEMBL | |
| Q6ZUW0_HUMAN | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2011-08-16 | HLA-F | major histocompatibility complex, class I, F | HLA-F | major histocompatibility complex, class I, F | Symbol and/or name change | 39860 | APPROVED |
| More on HLA-F | |||
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Entrez Gene | ||
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Ensembl Gene | ||
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HGNC Report | ||
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NCBI Map Viewer | ||
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Vista | ||
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Vista + UCSC | ||
| RGD Object Information | |
| RGD ID: | 1345133 |
| Created: | 2005-03-08 |
| Species: | Homo sapiens |
| Last Modified: | 2013-04-02 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




