ZFP57 (ZFP57 zinc finger protein) - Rat Genome Database

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Gene: ZFP57 (ZFP57 zinc finger protein) Homo sapiens
Analyze
Symbol: ZFP57
Name: ZFP57 zinc finger protein
RGD ID: 1344217
HGNC Page HGNC:18791
Description: Enables chromatin binding activity. Involved in autosome genomic imprinting. Predicted to be part of heterochromatin. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: bA145L22; bA145L22.2; C6orf40; chromosome 6 open reading frame 40; TNDM1; zfp-57; zinc finger protein 57 homolog; zinc finger protein 698; ZNF698
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,672,392 - 29,681,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl629,672,483 - 29,681,155 (-)EnsemblGRCh38hg38GRCh38
GRCh37629,640,169 - 29,648,929 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,748,239 - 29,756,866 (-)NCBINCBI36Build 36hg18NCBI36
Celera631,246,246 - 31,251,015 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,447,209 - 29,452,012 (-)NCBIHuRef
CHM1_1629,642,261 - 29,647,014 (-)NCBICHM1_1
T2T-CHM13v2.0629,547,090 - 29,555,881 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. On how mammalian transcription factors recognize methylated DNA. Buck-Koehntop BA and Defossez PA, Epigenetics. 2013 Feb;8(2):131-7. doi: 10.4161/epi.23632. Epub 2013 Jan 16.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
Additional References at PubMed
PMID:8120052   PMID:12477932   PMID:15070898   PMID:18622393   PMID:18854139   PMID:19632365   PMID:19851445   PMID:20301706   PMID:21863059   PMID:21873635   PMID:22055183   PMID:23499433  
PMID:23748067   PMID:24135613   PMID:24193346   PMID:24469060   PMID:24618825   PMID:27075368   PMID:29484033   PMID:30602440   PMID:30694787   PMID:30787268   PMID:32296183   PMID:33053156  
PMID:33500348   PMID:34048709   PMID:35156780   PMID:35175239  


Genomics

Comparative Map Data
ZFP57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,672,392 - 29,681,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl629,672,483 - 29,681,155 (-)EnsemblGRCh38hg38GRCh38
GRCh37629,640,169 - 29,648,929 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,748,239 - 29,756,866 (-)NCBINCBI36Build 36hg18NCBI36
Celera631,246,246 - 31,251,015 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,447,209 - 29,452,012 (-)NCBIHuRef
CHM1_1629,642,261 - 29,647,014 (-)NCBICHM1_1
T2T-CHM13v2.0629,547,090 - 29,555,881 (-)NCBIT2T-CHM13v2.0
Zfp57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,307,060 - 37,326,196 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,312,055 - 37,321,527 (+)EnsemblGRCm39 Ensembl
GRCm381737,001,163 - 37,010,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,001,163 - 37,010,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371737,138,108 - 37,147,674 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361736,610,595 - 36,618,685 (+)NCBIMGSCv36mm8
Celera1740,424,834 - 40,434,322 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
Zfp57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,526,565 - 1,546,480 (-)NCBIGRCr8
mRatBN7.2201,521,323 - 1,534,884 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,521,323 - 1,529,846 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx201,576,736 - 1,583,058 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,580,232 - 1,586,554 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,521,892 - 1,528,175 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0202,014,177 - 2,020,488 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,014,170 - 2,020,537 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0204,054,802 - 4,061,113 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,611,856 - 1,618,167 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1201,612,083 - 1,617,758 (-)NCBI
Celera202,231,911 - 2,238,222 (-)NCBICelera
Cytogenetic Map20p12NCBI
Zfp57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955583151,338 - 154,827 (-)NCBIChiLan1.0ChiLan1.0
LOC100977775
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2544,293,093 - 44,296,605 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1640,254,065 - 40,264,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,476,459 - 29,485,480 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1630,134,263 - 30,143,045 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,134,263 - 30,143,045 (-)Ensemblpanpan1.1panPan2
ZFP57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13526,267,358 - 26,269,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.03526,575,720 - 26,581,501 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13526,230,410 - 26,236,187 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03526,291,343 - 26,297,127 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03527,761,408 - 27,767,190 (-)NCBIUU_Cfam_GSD_1.0
Zfp57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,520,334 - 32,532,225 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367231,063,969 - 1,069,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP57
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,605,125 - 22,612,064 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,607,420 - 22,612,064 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2725,016,155 - 25,020,986 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,942,002 - 42,947,064 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604429,201,143 - 29,205,907 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475425,390,107 - 25,397,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZFP57
99 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001109809.2(ZFP57):c.783C>A (p.Cys261Ter) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000000751] Chr6:29673328 [GRCh38]
Chr6:29641105 [GRCh37]
Chr6:6p22.1
pathogenic
NM_001109809.5(ZFP57):c.317_318del (p.Glu106fs) microsatellite Diabetes mellitus, transient neonatal, 1 [RCV000000752] Chr6:29675420..29675421 [GRCh38]
Chr6:29643197..29643198 [GRCh37]
Chr6:6p22.1
pathogenic
NM_001109809.5(ZFP57):c.1383del (p.Tyr462fs) deletion Diabetes mellitus, transient neonatal, 1 [RCV000000753] Chr6:29672728 [GRCh38]
Chr6:29640505 [GRCh37]
Chr6:6p22.1
pathogenic
NM_001109809.5(ZFP57):c.1372C>G (p.His458Asp) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000000754] Chr6:29672739 [GRCh38]
Chr6:29640516 [GRCh37]
Chr6:6p22.1
pathogenic
NM_001109809.5(ZFP57):c.743G>A (p.Arg248His) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000000755] Chr6:29673368 [GRCh38]
Chr6:29641145 [GRCh37]
Chr6:6p22.1
pathogenic
NM_001109809.5(ZFP57):c.829C>A (p.His277Asn) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000000756] Chr6:29673282 [GRCh38]
Chr6:29641059 [GRCh37]
Chr6:6p22.1
pathogenic
NM_001109809.5(ZFP57):c.898_905del (p.Gly299_Thr300insTer) deletion Diabetes mellitus, transient neonatal, 1 [RCV000000757] Chr6:29673206..29673213 [GRCh38]
Chr6:29640983..29640990 [GRCh37]
Chr6:6p22.1
pathogenic
NM_001109809.2(ZFP57):c.-535A>C single nucleotide variant Lung cancer [RCV000096813] Chr6:29677538 [GRCh38]
Chr6:29645315 [GRCh37]
Chr6:6p22.1
uncertain significance
GRCh38/hg38 6p22.3-21.33(chr6:18120520-30767516)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|See cases [RCV000052180] Chr6:18120520..30767516 [GRCh38]
Chr6:18120751..30735293 [GRCh37]
Chr6:18228730..30843272 [NCBI36]
Chr6:6p22.3-21.33
pathogenic
NM_001109809.2(ZFP57):c.852G>A (p.Gln284=) single nucleotide variant Malignant melanoma [RCV000067265] Chr6:29673259 [GRCh38]
Chr6:29641036 [GRCh37]
Chr6:29749015 [NCBI36]
Chr6:6p22.1
not provided
NM_001109809.2(ZFP57):c.1520G>A (p.Arg507Lys) single nucleotide variant Malignant melanoma [RCV000061379] Chr6:29672591 [GRCh38]
Chr6:29640368 [GRCh37]
Chr6:29748347 [NCBI36]
Chr6:6p22.1
not provided
NM_001109809.2(ZFP57):c.105G>A (p.Arg35=) single nucleotide variant Malignant melanoma [RCV000061380] Chr6:29676899 [GRCh38]
Chr6:29644676 [GRCh37]
Chr6:29752655 [NCBI36]
Chr6:6p22.1
not provided
NM_001109809.5(ZFP57):c.1118C>G (p.Ser373Cys) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV001157865]|not provided [RCV000118887] Chr6:29672993 [GRCh38]
Chr6:29640770 [GRCh37]
Chr6:6p22.1
likely benign|conflicting interpretations of pathogenicity|uncertain significance
NM_001109809.5(ZFP57):c.113G>A (p.Arg38Gln) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000270020]|not provided [RCV000118888] Chr6:29676891 [GRCh38]
Chr6:29644668 [GRCh37]
Chr6:6p22.1
likely benign|conflicting interpretations of pathogenicity|uncertain significance
NM_001109809.5(ZFP57):c.1086T>C (p.Thr362=) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000286888]|not provided [RCV001795186]|not specified [RCV000118886] Chr6:29673025 [GRCh38]
Chr6:29640802 [GRCh37]
Chr6:6p22.1
benign|likely benign|uncertain significance
NM_001109809.5(ZFP57):c.593A>G (p.Asn198Ser) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000397252]|Monogenic diabetes [RCV001174461]|ZFP57-related condition [RCV003905131]|not provided [RCV001594846]|not specified [RCV000118889] Chr6:29673518 [GRCh38]
Chr6:29641295 [GRCh37]
Chr6:6p22.1
benign|likely benign
NM_001109809.5(ZFP57):c.783C>T (p.Cys261=) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV001153674]|not provided [RCV001795187]|not specified [RCV000118890] Chr6:29673328 [GRCh38]
Chr6:29641105 [GRCh37]
Chr6:6p22.1
benign|likely benign
NM_001109809.5(ZFP57):c.1103A>T (p.Asp368Val) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000382332]|not provided [RCV001522543]|not specified [RCV000118891] Chr6:29673008 [GRCh38]
Chr6:29640785 [GRCh37]
Chr6:6p22.1
benign|likely benign
NM_001109809.5(ZFP57):c.374G>A (p.Arg125Gln) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000271267]|Monogenic diabetes [RCV001174465]|Transitory neonatal diabetes mellitus [RCV002250565]|not provided [RCV001516221]|not specified [RCV000118892] Chr6:29673737 [GRCh38]
Chr6:29641514 [GRCh37]
Chr6:6p22.1
benign|likely benign|uncertain significance
NM_001109809.5(ZFP57):c.559C>T (p.Arg187Cys) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000298292]|ZFP57-related condition [RCV003975060]|not provided [RCV001598625]|not specified [RCV000118893] Chr6:29673552 [GRCh38]
Chr6:29641329 [GRCh37]
Chr6:6p22.1
benign|likely benign
GRCh38/hg38 6p25.2-21.33(chr6:3224310-30657190)x3 copy number gain See cases [RCV000138956] Chr6:3224310..30657190 [GRCh38]
Chr6:3224544..30624967 [GRCh37]
Chr6:3169543..30732946 [NCBI36]
Chr6:6p25.2-21.33
pathogenic
GRCh38/hg38 6p22.1(chr6:28763187-29769828)x3 copy number gain See cases [RCV000141858] Chr6:28763187..29769828 [GRCh38]
Chr6:28730964..29737605 [GRCh37]
Chr6:28838943..29845584 [NCBI36]
Chr6:6p22.1
uncertain significance
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3
pathogenic
NM_001109809.5(ZFP57):c.1545C>G (p.Gly515=) single nucleotide variant not specified [RCV000194573] Chr6:29672566 [GRCh38]
Chr6:29640343 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.495G>A (p.Val165=) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000277055]|not provided [RCV003556361] Chr6:29673616 [GRCh38]
Chr6:29641393 [GRCh37]
Chr6:6p22.1
likely benign|uncertain significance
NM_001109809.5(ZFP57):c.1472C>G (p.Thr491Ser) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000344122]|Inborn genetic diseases [RCV002523562]|Monogenic diabetes [RCV001174428]|ZFP57-related condition [RCV003902383]|not provided [RCV002058578] Chr6:29672639 [GRCh38]
Chr6:29640416 [GRCh37]
Chr6:6p22.1
likely benign|uncertain significance
NM_001109809.5(ZFP57):c.475A>T (p.Thr159Ser) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000368168]|Monogenic diabetes [RCV001174464]|ZFP57-related condition [RCV003897799]|not provided [RCV002058580] Chr6:29673636 [GRCh38]
Chr6:29641413 [GRCh37]
Chr6:6p22.1
likely benign|uncertain significance
NM_001109809.5(ZFP57):c.553A>G (p.Ser185Gly) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000369423] Chr6:29673558 [GRCh38]
Chr6:29641335 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.752G>A (p.Arg251His) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000299652]|Inborn genetic diseases [RCV002524473] Chr6:29673359 [GRCh38]
Chr6:29641136 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.112C>T (p.Arg38Trp) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000322735]|Monogenic diabetes [RCV001174467]|not provided [RCV002058581] Chr6:29676892 [GRCh38]
Chr6:29644669 [GRCh37]
Chr6:6p22.1
benign|likely benign|uncertain significance
NM_001109809.5(ZFP57):c.749G>A (p.Arg250His) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000338195]|Inborn genetic diseases [RCV003352847] Chr6:29673362 [GRCh38]
Chr6:29641139 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.277C>G (p.Leu93Val) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000380716]|not provided [RCV001850887] Chr6:29675461 [GRCh38]
Chr6:29643238 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.285C>T (p.Thr95=) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000328426]|ZFP57-related condition [RCV003932470] Chr6:29675453 [GRCh38]
Chr6:29643230 [GRCh37]
Chr6:6p22.1
likely benign|uncertain significance
NM_001109809.4(ZFP57):c.*55T>C single nucleotide variant Transient Neonatal Diabetes, Recessive [RCV000291420] Chr6:29672445 [GRCh38]
Chr6:29640222 [GRCh37]
Chr6:6p22.1
likely benign
NM_001109809.5(ZFP57):c.491G>A (p.Arg164Gln) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000311047]|Monogenic diabetes [RCV001174463]|Transitory neonatal diabetes mellitus [RCV003221301]|not provided [RCV002058579] Chr6:29673620 [GRCh38]
Chr6:29641397 [GRCh37]
Chr6:6p22.1
benign|likely benign
NM_001109809.5(ZFP57):c.857C>T (p.Pro286Leu) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000339576] Chr6:29673254 [GRCh38]
Chr6:29641031 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.798G>A (p.Lys266=) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000397242] Chr6:29673313 [GRCh38]
Chr6:29641090 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.826C>T (p.Arg276Cys) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV001152390]|not provided [RCV002557289] Chr6:29673285 [GRCh38]
Chr6:29641062 [GRCh37]
Chr6:6p22.1
uncertain significance
GRCh37/hg19 6p22.1(chr6:29644909-29760628)x3 copy number gain See cases [RCV000446284] Chr6:29644909..29760628 [GRCh37]
Chr6:6p22.1
likely benign
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
NM_001109809.5(ZFP57):c.56G>A (p.Gly19Asp) single nucleotide variant not provided [RCV002524341]|not specified [RCV000499414] Chr6:29676948 [GRCh38]
Chr6:29644725 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.724G>T (p.Asp242Tyr) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV000625683] Chr6:29673387 [GRCh38]
Chr6:29641164 [GRCh37]
Chr6:6p22.1
uncertain significance
GRCh37/hg19 6p22.1-q14.1(chr6:29455465-81447367) copy number gain not provided [RCV000767714] Chr6:29455465..81447367 [GRCh37]
Chr6:6p22.1-q14.1
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p22.1-21.32(chr6:28130359-32108367)x3 copy number gain not provided [RCV000745592] Chr6:28130359..32108367 [GRCh37]
Chr6:6p22.1-21.32
uncertain significance
NM_001109809.5(ZFP57):c.251-23T>G single nucleotide variant not provided [RCV001647889] Chr6:29675510 [GRCh38]
Chr6:29643287 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.124-204G>A single nucleotide variant not provided [RCV001643758] Chr6:29676263 [GRCh38]
Chr6:29644040 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.1033G>C (p.Ala345Pro) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV001152387]|Monogenic diabetes [RCV001174459]|ZFP57-related condition [RCV003906270]|not provided [RCV002070848] Chr6:29673078 [GRCh38]
Chr6:29640855 [GRCh37]
Chr6:6p22.1
likely benign|uncertain significance
NM_001109809.5(ZFP57):c.1230G>A (p.Pro410=) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV001157864] Chr6:29672881 [GRCh38]
Chr6:29640658 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.1181G>A (p.Ser394Asn) single nucleotide variant Inborn genetic diseases [RCV003274650] Chr6:29672930 [GRCh38]
Chr6:29640707 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.353-78C>T single nucleotide variant not provided [RCV001621450] Chr6:29673836 [GRCh38]
Chr6:29641613 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.123+25G>A single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV002243427]|not provided [RCV001693955] Chr6:29676856 [GRCh38]
Chr6:29644633 [GRCh37]
Chr6:6p22.1
benign
NM_206809.4(MOG):c.*1108TAAA[10] microsatellite not provided [RCV001650105] Chr6:29672290..29672293 [GRCh38]
Chr6:29640067..29640070 [GRCh37]
Chr6:6p22.1
benign
NM_206809.4(MOG):c.*1059T>C single nucleotide variant not provided [RCV001714922] Chr6:29672244 [GRCh38]
Chr6:29640021 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.250+220T>C single nucleotide variant not provided [RCV001656960] Chr6:29675713 [GRCh38]
Chr6:29643490 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.532T>C (p.Tyr178His) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV001153676]|Monogenic diabetes [RCV001174462]|ZFP57-related condition [RCV003906273]|not provided [RCV002070874] Chr6:29673579 [GRCh38]
Chr6:29641356 [GRCh37]
Chr6:6p22.1
likely benign|uncertain significance
NM_001109809.5(ZFP57):c.937A>G (p.Arg313Gly) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV001152388]|Monogenic diabetes [RCV001174460]|not provided [RCV001511707] Chr6:29673174 [GRCh38]
Chr6:29640951 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.-258G>T single nucleotide variant not provided [RCV001657182] Chr6:29677261 [GRCh38]
Chr6:29645038 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.-338C>G single nucleotide variant not provided [RCV001536932] Chr6:29677341 [GRCh38]
Chr6:29645118 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.352+177_352+184dup microsatellite not provided [RCV001689070] Chr6:29675201..29675202 [GRCh38]
Chr6:29642978..29642979 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.353-102C>T single nucleotide variant not provided [RCV001621735] Chr6:29673860 [GRCh38]
Chr6:29641637 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.352+212dup indel not provided [RCV001614563] Chr6:29675151..29675152 [GRCh38]
Chr6:29642928..29642929 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.352+232_352+234del microsatellite not provided [RCV001598245] Chr6:29675152..29675154 [GRCh38]
Chr6:29642929..29642931 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.288G>C (p.Lys96Asn) single nucleotide variant Monogenic diabetes [RCV001174466] Chr6:29675450 [GRCh38]
Chr6:29643227 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.843C>T (p.His281=) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV001152389]|not provided [RCV002070849] Chr6:29673268 [GRCh38]
Chr6:29641045 [GRCh37]
Chr6:6p22.1
benign|likely benign
NM_001109809.5(ZFP57):c.353-152T>C single nucleotide variant not provided [RCV001684985] Chr6:29673910 [GRCh38]
Chr6:29641687 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.352+213T>C single nucleotide variant not provided [RCV001645893] Chr6:29675173 [GRCh38]
Chr6:29642950 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.-190A>G single nucleotide variant not provided [RCV001690911] Chr6:29677193 [GRCh38]
Chr6:29644970 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.732T>C (p.Ser244=) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV001153675]|not provided [RCV001518659]|not specified [RCV001819861] Chr6:29673379 [GRCh38]
Chr6:29641156 [GRCh37]
Chr6:6p22.1
benign|likely benign
NM_001109809.5(ZFP57):c.458del (p.Leu153fs) deletion not provided [RCV001817932] Chr6:29673653 [GRCh38]
Chr6:29641430 [GRCh37]
Chr6:6p22.1
pathogenic
NM_001109809.5(ZFP57):c.1604A>G (p.His535Arg) single nucleotide variant not provided [RCV001357271] Chr6:29672507 [GRCh38]
Chr6:29640284 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.352+234del deletion not provided [RCV001645380] Chr6:29675152 [GRCh38]
Chr6:29642929 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.123+156G>A single nucleotide variant not provided [RCV001684430] Chr6:29676725 [GRCh38]
Chr6:29644502 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.124-41T>C single nucleotide variant not provided [RCV001654659] Chr6:29676100 [GRCh38]
Chr6:29643877 [GRCh37]
Chr6:6p22.1
benign
NM_001109809.5(ZFP57):c.711dup (p.Lys238fs) duplication Diabetes mellitus, transient neonatal, 1 [RCV001784045] Chr6:29673399..29673400 [GRCh38]
Chr6:29641176..29641177 [GRCh37]
Chr6:6p22.1
likely pathogenic
NM_001109809.5(ZFP57):c.448C>T (p.Gln150Ter) single nucleotide variant ZFP57-related condition [RCV003956715] Chr6:29673663 [GRCh38]
Chr6:29641440 [GRCh37]
Chr6:6p22.1
likely pathogenic
NM_001109809.5(ZFP57):c.133del (p.Thr45fs) deletion Diabetes mellitus, transient neonatal, 1 [RCV001785155] Chr6:29676050 [GRCh38]
Chr6:29643827 [GRCh37]
Chr6:6p22.1
pathogenic
NC_000006.11:g.28005012_31683185del deletion Megacolon [RCV001290055] Chr6:28005012..31683185 [GRCh37]
Chr6:6p22.1-21.33
likely pathogenic
NM_001109809.5(ZFP57):c.194_197dup (p.Val67fs) microsatellite not provided [RCV001817920] Chr6:29675985..29675986 [GRCh38]
Chr6:29643762..29643763 [GRCh37]
Chr6:6p22.1
pathogenic
NM_001109809.5(ZFP57):c.805C>T (p.Arg269Trp) single nucleotide variant not specified [RCV001819634] Chr6:29673306 [GRCh38]
Chr6:29641083 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.770G>A (p.Arg257Gln) single nucleotide variant not provided [RCV001817908] Chr6:29673341 [GRCh38]
Chr6:29641118 [GRCh37]
Chr6:6p22.1
likely pathogenic
NM_001109809.5(ZFP57):c.1126G>C (p.Val376Leu) single nucleotide variant not provided [RCV002041363] Chr6:29672985 [GRCh38]
Chr6:29640762 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.869A>G (p.Asn290Ser) single nucleotide variant not provided [RCV001900951] Chr6:29673242 [GRCh38]
Chr6:29641019 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.603G>A (p.Leu201=) single nucleotide variant not provided [RCV001942582] Chr6:29673508 [GRCh38]
Chr6:29641285 [GRCh37]
Chr6:6p22.1
likely benign
NM_001109809.5(ZFP57):c.352+3A>G single nucleotide variant ZFP57-related condition [RCV003978423]|not provided [RCV001933713] Chr6:29675383 [GRCh38]
Chr6:29643160 [GRCh37]
Chr6:6p22.1
likely benign|uncertain significance
NM_001109809.5(ZFP57):c.666A>T (p.Arg222Ser) single nucleotide variant not provided [RCV001997052] Chr6:29673445 [GRCh38]
Chr6:29641222 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.22A>G (p.Ile8Val) single nucleotide variant not provided [RCV001925224] Chr6:29676982 [GRCh38]
Chr6:29644759 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.820C>T (p.Leu274Phe) single nucleotide variant not provided [RCV002014510] Chr6:29673291 [GRCh38]
Chr6:29641068 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.353-13T>C single nucleotide variant not provided [RCV002196889] Chr6:29673771 [GRCh38]
Chr6:29641548 [GRCh37]
Chr6:6p22.1
likely benign
NM_001109809.5(ZFP57):c.352+15G>T single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV003120123] Chr6:29675371 [GRCh38]
Chr6:29643148 [GRCh37]
Chr6:6p22.1
likely benign
NM_001109809.5(ZFP57):c.722dup (p.Cys241fs) duplication not provided [RCV003151693] Chr6:29673388..29673389 [GRCh38]
Chr6:29641165..29641166 [GRCh37]
Chr6:6p22.1
likely pathogenic
GRCh37/hg19 6p22.1(chr6:29162783-30236331)x3 copy number gain not provided [RCV002472477] Chr6:29162783..30236331 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.1253G>T (p.Ser418Ile) single nucleotide variant not provided [RCV002731418] Chr6:29672858 [GRCh38]
Chr6:29640635 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.1521G>T (p.Arg507Ser) single nucleotide variant not provided [RCV003018048] Chr6:29672590 [GRCh38]
Chr6:29640367 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.460T>C (p.Ser154Pro) single nucleotide variant Inborn genetic diseases [RCV002886720] Chr6:29673651 [GRCh38]
Chr6:29641428 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.943A>G (p.Ile315Val) single nucleotide variant Inborn genetic diseases [RCV002844253] Chr6:29673168 [GRCh38]
Chr6:29640945 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.1339C>A (p.Leu447Ile) single nucleotide variant Inborn genetic diseases [RCV002798458] Chr6:29672772 [GRCh38]
Chr6:29640549 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.407C>T (p.Thr136Ile) single nucleotide variant not provided [RCV003056724] Chr6:29673704 [GRCh38]
Chr6:29641481 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.469G>C (p.Ala157Pro) single nucleotide variant Inborn genetic diseases [RCV002874336] Chr6:29673642 [GRCh38]
Chr6:29641419 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.337A>G (p.Thr113Ala) single nucleotide variant Inborn genetic diseases [RCV002853870] Chr6:29675401 [GRCh38]
Chr6:29643178 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.1529C>A (p.Thr510Asn) single nucleotide variant Inborn genetic diseases [RCV002921096] Chr6:29672582 [GRCh38]
Chr6:29640359 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.1550G>C (p.Arg517Thr) single nucleotide variant Inborn genetic diseases [RCV002813764] Chr6:29672561 [GRCh38]
Chr6:29640338 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.925G>A (p.Ala309Thr) single nucleotide variant not provided [RCV003089641] Chr6:29673186 [GRCh38]
Chr6:29640963 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.605C>G (p.Thr202Ser) single nucleotide variant not provided [RCV002716509] Chr6:29673506 [GRCh38]
Chr6:29641283 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.1283T>C (p.Val428Ala) single nucleotide variant Inborn genetic diseases [RCV002959337] Chr6:29672828 [GRCh38]
Chr6:29640605 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.1112C>G (p.Ser371Cys) single nucleotide variant Inborn genetic diseases [RCV002649018] Chr6:29672999 [GRCh38]
Chr6:29640776 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.520C>T (p.Pro174Ser) single nucleotide variant not provided [RCV003045150] Chr6:29673591 [GRCh38]
Chr6:29641368 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.668G>A (p.Arg223His) single nucleotide variant not provided [RCV003091714] Chr6:29673443 [GRCh38]
Chr6:29641220 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.144T>C (p.Asp48=) single nucleotide variant not provided [RCV003044151] Chr6:29676039 [GRCh38]
Chr6:29643816 [GRCh37]
Chr6:6p22.1
likely benign
NM_001109809.5(ZFP57):c.1585G>A (p.Ala529Thr) single nucleotide variant ZFP57-related condition [RCV003973721]|not provided [RCV002634173] Chr6:29672526 [GRCh38]
Chr6:29640303 [GRCh37]
Chr6:6p22.1
likely benign
NM_001109809.5(ZFP57):c.289C>A (p.Leu97Ile) single nucleotide variant Inborn genetic diseases [RCV003255592] Chr6:29675449 [GRCh38]
Chr6:29643226 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.539G>A (p.Cys180Tyr) single nucleotide variant Inborn genetic diseases [RCV003379174] Chr6:29673572 [GRCh38]
Chr6:29641349 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.785C>G (p.Ser262Cys) single nucleotide variant Inborn genetic diseases [RCV003385278] Chr6:29673326 [GRCh38]
Chr6:29641103 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.400G>A (p.Glu134Lys) single nucleotide variant Inborn genetic diseases [RCV003386448] Chr6:29673711 [GRCh38]
Chr6:29641488 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.758A>T (p.His253Leu) single nucleotide variant not provided [RCV003431701] Chr6:29673353 [GRCh38]
Chr6:29641130 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.751C>T (p.Arg251Cys) single nucleotide variant Diabetes mellitus, transient neonatal, 1 [RCV003448640] Chr6:29673360 [GRCh38]
Chr6:29641137 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.819G>A (p.Glu273=) single nucleotide variant not provided [RCV003695821] Chr6:29673292 [GRCh38]
Chr6:29641069 [GRCh37]
Chr6:6p22.1
likely benign
NM_001109809.5(ZFP57):c.222G>A (p.Ser74=) single nucleotide variant not provided [RCV003545807] Chr6:29675961 [GRCh38]
Chr6:29643738 [GRCh37]
Chr6:6p22.1
likely benign
NM_001109809.5(ZFP57):c.637C>T (p.Arg213Trp) single nucleotide variant not provided [RCV003725932] Chr6:29673474 [GRCh38]
Chr6:29641251 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001109809.5(ZFP57):c.570C>A (p.Leu190=) single nucleotide variant not provided [RCV003866505] Chr6:29673541 [GRCh38]
Chr6:29641318 [GRCh37]
Chr6:6p22.1
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:541
Count of miRNA genes:192
Interacting mature miRNAs:204
Transcripts:ENST00000376881, ENST00000376883, ENST00000488757
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
GDB:314693  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,640,042 - 29,640,153UniSTSGRCh37
GRCh371923,731,869 - 23,732,512UniSTSGRCh37
Build 36629,748,021 - 29,748,132RGDNCBI36
Celera1923,568,561 - 23,569,204UniSTS
Celera631,246,119 - 31,246,230RGD
Cytogenetic Map6p22.1UniSTS
HuRef629,447,082 - 29,447,193UniSTS
HuRef1923,276,566 - 23,277,209UniSTS
SHGC-143535  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,646,980 - 29,647,319UniSTSGRCh37
Build 36629,754,959 - 29,755,298RGDNCBI36
Celera631,253,064 - 31,253,403RGD
HuRef629,454,057 - 29,454,396UniSTS
TNG Radiation Hybrid Map616612.0UniSTS
JA07  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,643,836 - 29,643,934UniSTSGRCh37
Build 36629,751,815 - 29,751,913RGDNCBI36
Celera631,249,920 - 31,250,018RGD
Cytogenetic Map6p22.1UniSTS
STS-Z48051  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,640,921 - 29,641,152UniSTSGRCh37
Build 36629,748,900 - 29,749,131RGDNCBI36
Celera631,246,998 - 31,247,229RGD
Cytogenetic Map6p22.1UniSTS
HuRef629,447,961 - 29,448,192UniSTS
GeneMap99-GB4 RH Map6116.39UniSTS
MOGc  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,645,491 - 29,645,620UniSTSGRCh37
GRCh37629,645,491 - 29,645,619UniSTSGRCh37
Build 36629,753,470 - 29,753,599RGDNCBI36
Celera631,251,575 - 31,251,703UniSTS
Celera631,251,575 - 31,251,704RGD
Cytogenetic Map6p22.1UniSTS
HuRef629,452,572 - 29,452,701UniSTS
HuRef629,452,572 - 29,452,700UniSTS
MOGb  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,643,805 - 29,643,964UniSTSGRCh37
Build 36629,751,784 - 29,751,943RGDNCBI36
Celera631,249,889 - 31,250,048RGD
Cytogenetic Map6p22.1UniSTS
D6S2831  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,640,035 - 29,640,153UniSTSGRCh37
Build 36629,748,014 - 29,748,132RGDNCBI36
Celera631,246,112 - 31,246,230RGD
HuRef629,447,075 - 29,447,193UniSTS
D6S2909  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,641,846 - 29,642,083UniSTSGRCh37
Build 36629,749,825 - 29,750,062RGDNCBI36
Celera631,247,923 - 31,248,160RGD
HuRef629,448,886 - 29,449,123UniSTS
D6S2869  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,642,858 - 29,643,105UniSTSGRCh37
Build 36629,750,837 - 29,751,084RGDNCBI36
Celera631,248,935 - 31,249,189RGD
HuRef629,449,898 - 29,450,152UniSTS
D6S2832  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,647,532 - 29,647,752UniSTSGRCh37
Build 36629,755,511 - 29,755,731RGDNCBI36
Celera631,253,616 - 31,253,834RGD
HuRef629,454,609 - 29,454,822UniSTS
MOGCA  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,645,484 - 29,645,620UniSTSGRCh37
GRCh37629,645,491 - 29,645,620UniSTSGRCh37
Build 36629,753,463 - 29,753,599RGDNCBI36
Celera631,251,575 - 31,251,704UniSTS
Celera631,251,568 - 31,251,704RGD
HuRef629,452,565 - 29,452,701UniSTS
HuRef629,452,572 - 29,452,701UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 21 189 3 101 78 68 259 5 16 10 3 2 40
Low 643 1106 450 145 595 68 1296 475 2335 119 699 507 82 426 668 2
Below cutoff 1278 1304 679 257 522 185 1852 1084 758 193 527 574 79 437 1315 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_013045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001109809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001366333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL050328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC157878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC171888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX120002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX927250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR388408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR759766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000376881   ⟹   ENSP00000366078
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl629,672,500 - 29,677,302 (-)Ensembl
RefSeq Acc Id: ENST00000376883   ⟹   ENSP00000366080
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl629,672,483 - 29,681,152 (-)Ensembl
RefSeq Acc Id: ENST00000488757   ⟹   ENSP00000418259
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl629,672,483 - 29,681,155 (-)Ensembl
RefSeq Acc Id: NM_001109809   ⟹   NP_001103279
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38629,672,483 - 29,681,152 (-)NCBI
GRCh37629,640,169 - 29,644,931 (-)RGD
Build 36629,748,239 - 29,756,866 (-)NCBI Archive
Celera631,246,246 - 31,251,015 (-)RGD
HuRef629,447,209 - 29,452,012 (-)RGD
CHM1_1629,642,261 - 29,647,014 (-)NCBI
T2T-CHM13v2.0629,547,181 - 29,555,881 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001366333   ⟹   NP_001353262
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38629,672,392 - 29,681,152 (-)NCBI
T2T-CHM13v2.0629,547,090 - 29,555,881 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001103279   ⟸   NM_001109809
- Peptide Label: isoform 1
- UniProtKB: A0A1U9X8V5 (UniProtKB/TrEMBL),   A0A1U9X8V4 (UniProtKB/TrEMBL),   A0A1U9X8Y0 (UniProtKB/TrEMBL),   A0A1U9X8Y2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001353262   ⟸   NM_001366333
- Peptide Label: isoform 2
- UniProtKB: A0A7I2S1M6 (UniProtKB/TrEMBL),   A0A1U9X8Y0 (UniProtKB/TrEMBL),   A0A1U9X8Y2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSP00000366080   ⟸   ENST00000376883
RefSeq Acc Id: ENSP00000366078   ⟸   ENST00000376881
RefSeq Acc Id: ENSP00000418259   ⟸   ENST00000488757
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9NU63-F1-model_v2 AlphaFold Q9NU63 1-452 view protein structure

Promoters
RGD ID:6872348
Promoter ID:EPDNEW_H9338
Type:initiation region
Name:ZFP57_1
Description:ZFP57 zinc finger protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38629,681,152 - 29,681,212EPDNEW
RGD ID:6805036
Promoter ID:HG_KWN:52757
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:ENST00000376880
Position:
Human AssemblyChrPosition (strand)Source
Build 36629,756,574 - 29,757,074 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18791 AgrOrtholog
COSMIC ZFP57 COSMIC
Ensembl Genes ENSG00000204644 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000206510 UniProtKB/Swiss-Prot
  ENSG00000223852 UniProtKB/Swiss-Prot
  ENSG00000223858 UniProtKB/Swiss-Prot
  ENSG00000226858 UniProtKB/Swiss-Prot
  ENSG00000227858 UniProtKB/TrEMBL
  ENSG00000232099 UniProtKB/Swiss-Prot
  ENSG00000234669 UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000376883 ENTREZGENE
  ENST00000376883.2 UniProtKB/Swiss-Prot
  ENST00000383628.6 UniProtKB/Swiss-Prot
  ENST00000416974.5 UniProtKB/Swiss-Prot
  ENST00000432222.1 UniProtKB/TrEMBL
  ENST00000435906.5 UniProtKB/Swiss-Prot
  ENST00000437216.5 UniProtKB/Swiss-Prot
  ENST00000446005.5 UniProtKB/Swiss-Prot
  ENST00000448114.5 UniProtKB/Swiss-Prot
  ENST00000488757 ENTREZGENE
  ENST00000488757.6 UniProtKB/TrEMBL
  ENST00000547542.2 UniProtKB/Swiss-Prot
  ENST00000547911.2 UniProtKB/Swiss-Prot
  ENST00000548001.2 UniProtKB/Swiss-Prot
  ENST00000548337.1 UniProtKB/Swiss-Prot
  ENST00000548574.1 UniProtKB/Swiss-Prot
  ENST00000548769.1 UniProtKB/Swiss-Prot
  ENST00000549167.1 UniProtKB/Swiss-Prot
  ENST00000549501.2 UniProtKB/Swiss-Prot
  ENST00000552809.1 UniProtKB/Swiss-Prot
  ENST00000552898.2 UniProtKB/Swiss-Prot
  ENST00000552987.2 UniProtKB/Swiss-Prot
  ENST00000553137.1 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000204644 GTEx
  ENSG00000206510 GTEx
  ENSG00000223852 GTEx
  ENSG00000223858 GTEx
  ENSG00000226858 GTEx
  ENSG00000227858 GTEx
  ENSG00000232099 GTEx
  ENSG00000234669 GTEx
HGNC ID HGNC:18791 ENTREZGENE
Human Proteome Map ZFP57 Human Proteome Map
InterPro KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:346171 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 346171 ENTREZGENE
OMIM 612192 OMIM
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  RIKEN CDNA 1700020N01 GENE-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 717 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134937821 PharmGKB
PROSITE KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140T983_HUMAN UniProtKB/TrEMBL
  A0A1U9X8V4 ENTREZGENE
  A0A1U9X8V5 ENTREZGENE, UniProtKB/TrEMBL
  A0A1U9X8Y0 ENTREZGENE, UniProtKB/TrEMBL
  A0A1U9X8Y2 ENTREZGENE, UniProtKB/TrEMBL
  A0A7I2S1M6 ENTREZGENE, UniProtKB/TrEMBL
  B7ZW61_HUMAN UniProtKB/TrEMBL
  Q9NU63 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A1U9X8V4 UniProtKB/TrEMBL
  B0S894 UniProtKB/Swiss-Prot
  B0V254 UniProtKB/Swiss-Prot
  B2RXJ7 UniProtKB/Swiss-Prot
  Q5SSB1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-04 ZFP57  ZFP57 zinc finger protein    zinc finger protein 57 homolog (mouse)  Symbol and/or name change 5135510 APPROVED