Gene: RIBC1 (RIB43A domain with coiled-coils 1)
Homo sapiens |
| Symbol: |
RIBC1
|
| Name: |
RIB43A domain with coiled-coils 1
|
| Description: |
INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene (ortholog) |
| Type: |
protein-coding
|
| RefSeq Status: |
VALIDATED
|
| Also known as: |
2610028I09Rik; FLJ32783; MGC46233; OTTHUMP00000023353; OTTHUMP00000023354; OTTHUMP00000023355; RIB43A-like with coiled-coils protein 1
|
| Orthologs: |
Mus musculus : Ribc1
(RIB43A domain with coiled-coils 1)
MGI
Rattus norvegicus : Ribc1
(RIB43A domain with coiled-coils 1)
|
| Latest Assembly: |
Human Genome Assembly GRCh37
|
| Position: |
| Map | Chr | Position | Strand | Source |
|---|
Human Alternate Assembly CHM1_1 | X | 53,464,088 - 53,472,317 | + | NCBI | Human Genome Assembly HuRef | X | 50,507,462 - 50,515,692 | + | NCBI | Human Genome Assembly GRCh37 | X | 53,449,834 - 53,458,063 | + | NCBI | Human Celera Assembly | X | 57,281,396 - 57,289,616 | + | NCBI | Human Genome Assembly Build 36 | X | 53,466,564 - 53,474,784 | + | NCBI | Human Cytogenetic Map | X | p11.22 | | NCBI | Human Genome Assembly | X | 53,332,859 - 53,339,797 | | NCBI |
|
| Model |
|
 Gene-Chemical Interaction Annotations
| 17beta-estradiol | multiple interactions | EXP | | 6480464 | diindolylmethane inhibits the reaction [Estradiol results in increased expression of RIBC1 mRNA]; more ... | CTD | PMID:11179685 | | 17beta-estradiol | increases expression | EXP | | 6480464 | Estradiol results in increased expression of RIBC1 mRNA | CTD | PMID:11179685 | | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | EXP | | 6480464 | Tetrachlorodibenzodioxin inhibits the reaction [Estradiol results in increased expression of RIBC1 mRNA] | CTD | PMID:11179685 | | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:1551849 | 6480464 | Tetrachlorodibenzodioxin affects the expression of RIBC1 mRNA | CTD | PMID:21570461 | | 2,4-dinitrotoluene | affects expression | ISO | RGD:1359621 | 6480464 | 2,4-dinitrotoluene affects the expression of RIBC1 mRNA | CTD | PMID:21346803 | | 2,6-dinitrotoluene | affects expression | ISO | RGD:1359621 | 6480464 | 2,6-dinitrotoluene affects the expression of RIBC1 mRNA | CTD | PMID:21346803 | | benzo[a]pyrene | multiple interactions | ISO | RGD:1551849 | 6480464 | [Benzo(a)pyrene co-treated with XPA gene mutant form co-treated with TRP53 gene mutant form] results in increased expression of RIBC1 mRNA | CTD | PMID:21715664 | | dibutyl phthalate | increases expression | ISO | RGD:1359621 | 6480464 | Dibutyl Phthalate results in increased expression of RIBC1 mRNA | CTD | PMID:21266533 | |
Gene-Chemical Interaction Annotations
References - curated References - uncurated Genomics
Comparative Map Data
| RIBC1 (Homo sapiens) |
| Map | Chr | Position | Strand | Source |
|---|
Human Alternate Assembly CHM1_1 | X | 53,464,088 - 53,472,317 | + | NCBI | Human Genome Assembly HuRef | X | 50,507,462 - 50,515,692 | + | NCBI | Human Genome Assembly GRCh37 | X | 53,449,834 - 53,458,063 | + | NCBI | Human Celera Assembly | X | 57,281,396 - 57,289,616 | + | NCBI | Human Genome Assembly Build 36 | X | 53,466,564 - 53,474,784 | + | NCBI | Human Cytogenetic Map | X | p11.22 | | NCBI | Human Genome Assembly | X | 53,332,859 - 53,339,797 | | NCBI |
|
| Ribc1 (Mus musculus) |
| Map | Chr | Position | Strand | Source |
|---|
Mouse Genome Assembly GRCm38 | X | 152,004,584 - 152,016,295 | - | NCBI | Mouse cM Map | X | | - | NCBI | Mouse Celera Assembly | X | 132,413,743 - 132,425,602 | + | NCBI | Mouse Genome Assembly Build 37 | X | 148,439,127 - 148,450,838 | - | NCBI | Mouse Genome Assembly Build 36.1 | X | 148,439,125 - 148,450,838 | - | NCBI | Mouse Cytogenetic Map | X | F3 | | NCBI |
|
| Ribc1 (Rattus norvegicus) |
| Map | Chr | Position | Strand | Source |
|---|
Rat Cytogenetic Map | X | q21 | | NCBI | RGSC Genome Assembly v5.0 | X | 21,736,681 - 21,747,814 | + | NCBI | RGSC Genome Assembly v3.4 | X | 41,491,913 - 41,503,095 | - | NCBI | Rat Celera Assembly | X | 21,367,032 - 21,378,336 | - | NCBI | Genome Assembly 3.1 | X | 41,545,383 - 41,556,564 | - | NCBI |
|
Position Markers
| RH103498 |
| Map | Chr | Position | Strand | Source |
|---|
Human GeneMap99-GB4 RH Map | X | 166.61 | | UniSTS | Human Genome Assembly HuRef | X | 50,515,300 - 50,515,557 | | UniSTS | Human Genome Assembly GRCh37 | X | 53,457,671 - 53,457,928 | | UniSTS | Human Celera Assembly | X | 57,289,228 - 57,289,485 | | RGD | Human Genome Assembly Build 36 | X | 53,474,396 - 53,474,653 | | RGD | Human Cytogenetic Map | X | p11.22 | | UniSTS |
|
| RH1705 |
| Map | Chr | Position | Strand | Source |
|---|
Human NCBI RH Map | X | 290.3 | | UniSTS | Human GeneMap99-GB4 RH Map | X | 165.37 | | UniSTS | Human Genome Assembly HuRef | X | 50,515,917 - 50,516,148 | | UniSTS | Human Genome Assembly GRCh37 | X | 53,458,288 - 53,458,519 | | UniSTS | Human Celera Assembly | X | 57,289,845 - 57,290,076 | | RGD | Human Genome Assembly Build 36 | X | 53,475,013 - 53,475,244 | | RGD | Human Cytogenetic Map | X | p11.22 | | UniSTS | Human Cytogenetic Map | X | p11.2 | | UniSTS |
|
| SHGC-31766 |
| Map | Chr | Position | Strand | Source |
|---|
Human GeneMap99-G3 RH Map | X | 1584.0 | | UniSTS | Human NCBI RH Map | X | 290.3 | | UniSTS | Human Whitehead-RH Map | X | 95.4 | | UniSTS | Human GeneMap99-GB4 RH Map | X | 163.3 | | UniSTS | Human Stanford-G3 RH Map | X | 2353.0 | | UniSTS | Human Genome Assembly HuRef | X | 50,515,870 - 50,515,996 | | UniSTS | Human Genome Assembly GRCh37 | X | 53,458,241 - 53,458,367 | | UniSTS | Human Celera Assembly | X | 57,289,798 - 57,289,924 | | RGD | Human Genome Assembly Build 36 | X | 53,474,966 - 53,475,092 | | RGD | Human Cytogenetic Map | X | p11.22 | | UniSTS | Human Cytogenetic Map | X | p11.2 | | UniSTS |
|
QTLs in Region (Human Genome Assembly GRCh37)
| 1300008 | BP28_H | Blood pressure QTL 28 (human) | 3.3 | | Blood pressure | systolic | X | 28147835 | 54147835 | Human | | 1300025 | BP39_H | Blood pressure QTL 39 (human) | 2.41 | | Blood pressure | hypertension susceptibility | X | 29918800 | 55918800 | Human | | 2316729 | GLUCO289_H | Glucose level QTL 289 (human) | 1.67 | .00491 | Glucose level | | X | 42519191 | 68519191 | Human | | 2292803 | PRSTS95_H | Prostate tumor susceptibility QTL 95 (human) | | | Prostate tumor susceptibility | | X | 51655479 | 77655479 | Human | |
