UBB (ubiquitin B) - Rat Genome Database

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Gene: UBB (ubiquitin B) Homo sapiens
Analyze
Symbol: UBB
Name: ubiquitin B
RGD ID: 1344008
HGNC Page HGNC:12463
Description: Predicted to enable protein tag activity and ubiquitin protein ligase binding activity. Involved in positive regulation of protein monoubiquitination. Acts upstream of or within several processes, including mitochondrion transport along microtubule; regulation of apoptotic process; and regulation of proteasomal protein catabolic process. Located in mitochondrion; neuron projection; and neuronal cell body.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: epididymis secretory protein Li 50; FLJ25987; HEL-S-50; MGC8385; polyubiquitin B; polyubiquitin-B; RPS27A; UBA52; UBC; ubiquitin
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: UBBP1   UBBP2   UBBP3   UBBP4   UBBP5  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,380,779 - 16,382,745 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,380,798 - 16,382,745 (+)EnsemblGRCh38hg38GRCh38
GRCh371716,284,093 - 16,286,059 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361716,225,092 - 16,226,779 (+)NCBINCBI36Build 36hg18NCBI36
Build 341716,225,091 - 16,226,779NCBI
Celera1716,187,292 - 16,188,979 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1716,150,949 - 16,152,636 (+)NCBIHuRef
CHM1_11716,294,106 - 16,295,793 (+)NCBICHM1_1
T2T-CHM13v2.01716,283,097 - 16,285,063 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3'-diindolylmethane  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroperoxycyclophosphamide  (ISO)
acrylamide  (EXP)
ammonium chloride  (ISO)
antimycin A  (EXP)
aristolochic acid A  (EXP)
Aroclor 1254  (ISO)
arsenite(3-)  (EXP)
astaxanthin  (ISO)
Azaspiracid  (EXP)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
cadmium sulfate  (EXP)
caffeine  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (EXP)
carbon nanotube  (EXP,ISO)
chloropicrin  (EXP)
chlorpyrifos  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (EXP)
cyclosporin A  (EXP)
cypermethrin  (ISO)
cyproconazole  (ISO)
dinophysistoxin 1  (EXP)
diuron  (EXP)
doxorubicin  (EXP)
enzalutamide  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
fipronil  (ISO)
flavonoids  (ISO)
folic acid  (ISO)
FR900359  (EXP)
gallic acid  (EXP)
gentamycin  (ISO)
glyphosate  (ISO)
imidacloprid  (ISO)
inulin  (ISO)
isoprenaline  (ISO)
Licochalcone B  (EXP)
maneb  (ISO)
manganese(II) chloride  (ISO)
melatonin  (ISO)
menadione  (EXP)
methylisothiazolinone  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
nickel atom  (ISO)
nicotine  (ISO)
ochratoxin A  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phlorizin  (ISO)
propiconazole  (ISO)
pyrimidifen  (EXP)
pyrogallol  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
silicon dioxide  (EXP)
sunitinib  (EXP)
tebufenpyrad  (EXP)
thiabendazole  (ISO)
thifluzamide  (EXP)
toluene  (ISO)
trichloroethene  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
Additional References at PubMed
PMID:124018   PMID:1370760   PMID:1657614   PMID:1850507   PMID:2154095   PMID:2537950   PMID:2581967   PMID:2820408   PMID:2988935   PMID:3029682   PMID:3041007   PMID:6092831  
PMID:6261785   PMID:6275256   PMID:8087846   PMID:8107144   PMID:8166633   PMID:8275493   PMID:8702753   PMID:8889548   PMID:8917096   PMID:9422699   PMID:9488668   PMID:9504932  
PMID:9525617   PMID:9644242   PMID:9660940   PMID:10066798   PMID:10827953   PMID:10871850   PMID:10882101   PMID:10995389   PMID:11031247   PMID:11046148   PMID:11087859   PMID:11087860  
PMID:11112487   PMID:11146632   PMID:11173499   PMID:11231585   PMID:11285280   PMID:11320250   PMID:11597332   PMID:11603807   PMID:11742988   PMID:11790298   PMID:11931757   PMID:11991975  
PMID:12016299   PMID:12055595   PMID:12070128   PMID:12207904   PMID:12218189   PMID:12234927   PMID:12239347   PMID:12354939   PMID:12367500   PMID:12421820   PMID:12477932   PMID:12507430  
PMID:12593796   PMID:12609980   PMID:12610113   PMID:12682062   PMID:12787561   PMID:12791267   PMID:12820959   PMID:12853446   PMID:12857950   PMID:12871580   PMID:12883554   PMID:12893422  
PMID:12960054   PMID:14528304   PMID:14612456   PMID:14695475   PMID:14722266   PMID:14743216   PMID:14745543   PMID:14755250   PMID:14764729   PMID:15029244   PMID:15039775   PMID:15057824  
PMID:15070733   PMID:15105460   PMID:15120077   PMID:15125833   PMID:15143060   PMID:15149598   PMID:15218035   PMID:15231748   PMID:15276183   PMID:15308666   PMID:15324660   PMID:15342556  
PMID:15452314   PMID:15466860   PMID:15469821   PMID:15469984   PMID:15489334   PMID:15694335   PMID:15721744   PMID:15761153   PMID:15781449   PMID:15826667   PMID:15885686   PMID:15886351  
PMID:15994808   PMID:16023596   PMID:16027724   PMID:16118204   PMID:16123592   PMID:16129784   PMID:16137618   PMID:16169070   PMID:16174773   PMID:16189514   PMID:16209941   PMID:16226712  
PMID:16247449   PMID:16252010   PMID:16267042   PMID:16286470   PMID:16288044   PMID:16407252   PMID:16407834   PMID:16429130   PMID:16443603   PMID:16499958   PMID:16502470   PMID:16510124  
PMID:16543144   PMID:16581786   PMID:16625196   PMID:16630834   PMID:16651270   PMID:16701206   PMID:16712842   PMID:16763556   PMID:16775314   PMID:16808324   PMID:16874301   PMID:16904669  
PMID:16931761   PMID:16997282   PMID:17047224   PMID:17067581   PMID:17081983   PMID:17203973   PMID:17237936   PMID:17290220   PMID:17310990   PMID:17323924   PMID:17395554   PMID:17405812  
PMID:17558393   PMID:17571083   PMID:17609272   PMID:17620599   PMID:17662948   PMID:17719541   PMID:17719543   PMID:17803915   PMID:17931355   PMID:17936559   PMID:18029035   PMID:18082604  
PMID:18313049   PMID:18596088   PMID:18719106   PMID:19190083   PMID:19193609   PMID:19214209   PMID:19516896   PMID:19608861   PMID:19738201   PMID:19754430   PMID:20205790   PMID:20491623  
PMID:20826778   PMID:20924359   PMID:21059367   PMID:21378163   PMID:21480003   PMID:21516116   PMID:21544573   PMID:21565611   PMID:21630459   PMID:21873635   PMID:22078707   PMID:22082077  
PMID:22623428   PMID:22645313   PMID:22797007   PMID:22990118   PMID:23254330   PMID:23349634   PMID:23376485   PMID:23383273   PMID:23414517   PMID:23443559   PMID:23533145   PMID:23798571  
PMID:24022007   PMID:24039796   PMID:24318982   PMID:24367661   PMID:24457600   PMID:24660806   PMID:24751536   PMID:24981860   PMID:25147182   PMID:25204743   PMID:25281560   PMID:25416956  
PMID:25703377   PMID:25756610   PMID:25820252   PMID:25963833   PMID:26186194   PMID:26398855   PMID:26592444   PMID:26750481   PMID:26828794   PMID:27025967   PMID:27245450   PMID:27375898  
PMID:27452404   PMID:27462432   PMID:27503909   PMID:27558965   PMID:27650958   PMID:27684187   PMID:27861798   PMID:28225217   PMID:28242625   PMID:28292943   PMID:28442575   PMID:28443643  
PMID:28506460   PMID:28514442   PMID:28786561   PMID:28945249   PMID:29111377   PMID:29122008   PMID:29130934   PMID:29471350   PMID:29845934   PMID:29859926   PMID:29995846   PMID:29997495  
PMID:30076785   PMID:30340022   PMID:30425250   PMID:30442662   PMID:30523153   PMID:30619335   PMID:30745168   PMID:30948266   PMID:31067491   PMID:31091453   PMID:31253590   PMID:31267705  
PMID:31519766   PMID:31654319   PMID:31723608   PMID:31754404   PMID:31871319   PMID:31980649   PMID:32239614   PMID:32296183   PMID:32433965   PMID:32460013   PMID:32698014   PMID:32705536  
PMID:32751694   PMID:32812023   PMID:32814053   PMID:32814769   PMID:32877691   PMID:33080340   PMID:33134373   PMID:33144569   PMID:33306668   PMID:33499712   PMID:33892654   PMID:33903120  
PMID:33961781   PMID:34079125   PMID:34751669   PMID:34857952   PMID:35271311   PMID:36123327   PMID:36243803   PMID:36414381   PMID:36610398   PMID:36736316   PMID:36949045   PMID:37616343  
PMID:37931956  


Genomics

Comparative Map Data
UBB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,380,779 - 16,382,745 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,380,798 - 16,382,745 (+)EnsemblGRCh38hg38GRCh38
GRCh371716,284,093 - 16,286,059 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361716,225,092 - 16,226,779 (+)NCBINCBI36Build 36hg18NCBI36
Build 341716,225,091 - 16,226,779NCBI
Celera1716,187,292 - 16,188,979 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1716,150,949 - 16,152,636 (+)NCBIHuRef
CHM1_11716,294,106 - 16,295,793 (+)NCBICHM1_1
T2T-CHM13v2.01716,283,097 - 16,285,063 (+)NCBIT2T-CHM13v2.0
Ubb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,442,329 - 62,444,037 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,441,997 - 62,444,039 (+)EnsemblGRCm39 Ensembl
GRCm381162,551,171 - 62,553,213 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,551,171 - 62,553,213 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,365,006 - 62,366,714 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,367,697 - 62,369,407 (+)NCBIMGSCv36mm8
Celera1169,470,925 - 69,472,633 (+)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.46NCBI
Ubb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,746,923 - 47,748,628 (+)NCBIGRCr8
mRatBN7.21047,247,630 - 47,249,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1047,245,637 - 47,249,333 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,951,219 - 51,952,925 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,441,764 - 51,443,470 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,945,175 - 46,946,881 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,880,231 - 48,881,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,881,049 - 48,881,881 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,664,227 - 48,665,056 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11048,752,613 - 48,753,069NCBI
Celera1046,494,897 - 46,496,578 (+)NCBICelera
Cytogenetic Map10q23NCBI
UBB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21956,252,196 - 56,254,227 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11761,063,907 - 61,065,938 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01735,286,699 - 35,288,429 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,578,715 - 110,580,217 (+)NCBIpanpan1.1PanPan1.1panPan2
UBB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,533,365 - 39,535,120 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,511,426 - 39,535,815 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,679,659 - 39,681,890 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,643,511 - 39,645,744 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl539,640,787 - 39,645,440 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1539,615,228 - 39,617,465 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,560,488 - 39,562,718 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,752,689 - 39,754,922 (-)NCBIUU_Cfam_GSD_1.0
Ubb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,569,737 - 59,571,169 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936821241,981 - 243,304 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,171,289 - 59,172,841 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,171,258 - 59,172,841 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,297,981 - 62,299,561 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,279,271 - 15,289,111 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660595,683,854 - 5,685,836 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248774,050,188 - 4,051,768 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248774,050,188 - 4,051,849 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UBB
12 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17p12-11.2(chr17:15776915-18771753)x1 copy number loss See cases [RCV000050513] Chr17:15776915..18771753 [GRCh38]
Chr17:15680229..18675066 [GRCh37]
Chr17:15620954..18615791 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:15898032-20620700)x1 copy number loss See cases [RCV000050602] Chr17:15898032..20620700 [GRCh38]
Chr17:15801346..20524013 [GRCh37]
Chr17:15742071..20464605 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:15259164-20925299)x3 copy number gain See cases [RCV000051852] Chr17:15259164..20925299 [GRCh38]
Chr17:15162481..20828612 [GRCh37]
Chr17:15103206..20769204 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:15897832-20620841)x3 copy number gain See cases [RCV000051853] Chr17:15897832..20620841 [GRCh38]
Chr17:15801146..20524154 [GRCh37]
Chr17:15741871..20464746 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:15234685-20620700)x3 copy number gain See cases [RCV000051849] Chr17:15234685..20620700 [GRCh38]
Chr17:15138002..20524013 [GRCh37]
Chr17:15078727..20464605 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:10892259-17964282)x3 copy number gain See cases [RCV000052476] Chr17:10892259..17964282 [GRCh38]
Chr17:10795576..17867596 [GRCh37]
Chr17:10736301..17808321 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:15952071-18362819)x1 copy number loss See cases [RCV000054329] Chr17:15952071..18362819 [GRCh38]
Chr17:15855385..18266133 [GRCh37]
Chr17:15796110..18206858 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:16060129-20620841)x1 copy number loss See cases [RCV000054330] Chr17:16060129..20620841 [GRCh38]
Chr17:15963443..20524154 [GRCh37]
Chr17:15904168..20464746 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p11.2(chr17:16117885-18362819)x1 copy number loss See cases [RCV000054333] Chr17:16117885..18362819 [GRCh38]
Chr17:16021199..18266133 [GRCh37]
Chr17:15961924..18206858 [NCBI36]
Chr17:17p11.2		 pathogenic
GRCh38/hg38 17p11.2(chr17:16361086-18219405)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054335]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054335]|See cases [RCV000054335] Chr17:16361086..18219405 [GRCh38]
Chr17:16264400..18122719 [GRCh37]
Chr17:16205125..18063444 [NCBI36]
Chr17:17p11.2		 pathogenic
NM_018955.3(UBB):c.143A>T (p.Lys48Met) single nucleotide variant Malignant melanoma [RCV000063147] Chr17:16382050 [GRCh38]
Chr17:16285364 [GRCh37]
Chr17:16226089 [NCBI36]
Chr17:17p11.2		 not provided
NM_018955.3(UBB):c.150G>A (p.Leu50=) single nucleotide variant Malignant melanoma [RCV000063148] Chr17:16382057 [GRCh38]
Chr17:16285371 [GRCh37]
Chr17:16226096 [NCBI36]
Chr17:17p11.2		 not provided
NM_018955.3(UBB):c.160C>T (p.Arg54Cys) single nucleotide variant Malignant melanoma [RCV000063149] Chr17:16382067 [GRCh38]
Chr17:16285381 [GRCh37]
Chr17:16226106 [NCBI36]
Chr17:17p11.2		 not provided
GRCh38/hg38 17p12-11.2(chr17:15210400-18280816)x3 copy number gain See cases [RCV000137171] Chr17:15210400..18280816 [GRCh38]
Chr17:15113717..18184130 [GRCh37]
Chr17:15054442..18124855 [NCBI36]
Chr17:17p12-11.2		 pathogenic|likely pathogenic
GRCh38/hg38 17p12-11.2(chr17:15883037-20620700)x1 copy number loss See cases [RCV000139510] Chr17:15883037..20620700 [GRCh38]
Chr17:15786351..20524013 [GRCh37]
Chr17:15727076..20464605 [NCBI36]
Chr17:17p12-11.2		 pathogenic|likely pathogenic
GRCh38/hg38 17p12-11.2(chr17:15784832-16860143)x3 copy number gain See cases [RCV000141771] Chr17:15784832..16860143 [GRCh38]
Chr17:15688146..16763457 [GRCh37]
Chr17:15628871..16704182 [NCBI36]
Chr17:17p12-11.2		 uncertain significance
GRCh38/hg38 17p12-11.2(chr17:15552362-19014200)x3 copy number gain See cases [RCV000142169] Chr17:15552362..19014200 [GRCh38]
Chr17:15455676..18917513 [GRCh37]
Chr17:15396401..18858238 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:15066799-17472457)x1 copy number loss See cases [RCV000143046] Chr17:15066799..17472457 [GRCh38]
Chr17:14970116..17375771 [GRCh37]
Chr17:14910841..17316496 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:15883037-20658018)x1 copy number loss See cases [RCV000143177] Chr17:15883037..20658018 [GRCh38]
Chr17:15786351..20561331 [GRCh37]
Chr17:15727076..20501923 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:15850859-20649235)x1 copy number loss See cases [RCV000143650] Chr17:15850859..20649235 [GRCh38]
Chr17:15754173..20552548 [GRCh37]
Chr17:15694898..20493140 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:15729893-20510251)x1 copy number loss See cases [RCV000143485] Chr17:15729893..20510251 [GRCh38]
Chr17:15633207..20413564 [GRCh37]
Chr17:15573932..20354156 [NCBI36]
Chr17:17p12-11.2		 pathogenic
Single allele complex Breast ductal adenocarcinoma [RCV000207129] Chr17:9586165..16325968 [GRCh37]
Chr17:17p13.1-11.2		 uncertain significance
GRCh37/hg19 17p12-11.2(chr17:15767020-20261250)x3 copy number gain See cases [RCV000240104] Chr17:15767020..20261250 [GRCh37]
Chr17:17p12-11.2		 pathogenic
GRCh37/hg19 17p12-11.2(chr17:10771948-21510992)x1 copy number loss See cases [RCV000447345] Chr17:10771948..21510992 [GRCh37]
Chr17:17p12-11.2		 pathogenic
GRCh37/hg19 17p12-11.2(chr17:15745315-20261191)x1 copy number loss See cases [RCV000446498] Chr17:15745315..20261191 [GRCh37]
Chr17:17p12-11.2		 pathogenic
GRCh37/hg19 17p12-11.2(chr17:15688146-16727265)x3 copy number gain See cases [RCV000510417] Chr17:15688146..16727265 [GRCh37]
Chr17:17p12-11.2		 likely benign
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p12-11.2(chr17:15796140-20331131)x3 copy number gain not provided [RCV000751941] Chr17:15796140..20331131 [GRCh37]
Chr17:17p12-11.2		 pathogenic
NM_018955.4(UBB):c.618C>T (p.Arg206=) single nucleotide variant not provided [RCV000881413] Chr17:16382525 [GRCh38]
Chr17:16285839 [GRCh37]
Chr17:17p11.2		 likely benign
NM_018955.4(UBB):c.585C>T (p.Leu195=) single nucleotide variant not provided [RCV000902948] Chr17:16382492 [GRCh38]
Chr17:16285806 [GRCh37]
Chr17:17p11.2		 likely benign
NC_000017.11:g.(?_16217207)_(16972095_?)dup duplication not provided [RCV001032883] Chr17:16120521..16875409 [GRCh37]
Chr17:17p11.2		 uncertain significance
NM_018955.4(UBB):c.567C>T (p.Pro189=) single nucleotide variant not provided [RCV000903067] Chr17:16382474 [GRCh38]
Chr17:16285788 [GRCh37]
Chr17:17p11.2		 likely benign
NM_018955.4(UBB):c.27C>T (p.Thr9=) single nucleotide variant not provided [RCV000940913] Chr17:16381934 [GRCh38]
Chr17:16285248 [GRCh37]
Chr17:17p11.2		 likely benign
NM_018955.4(UBB):c.99G>A (p.Lys33=) single nucleotide variant not provided [RCV000891548] Chr17:16382006 [GRCh38]
Chr17:16285320 [GRCh37]
Chr17:17p11.2		 likely benign
NM_018955.4(UBB):c.645A>G (p.Lys215=) single nucleotide variant not provided [RCV000893446] Chr17:16382552 [GRCh38]
Chr17:16285866 [GRCh37]
Chr17:17p11.2		 likely benign
GRCh37/hg19 17p12-11.2(chr17:15599193-16756435)x3 copy number gain not provided [RCV000847169] Chr17:15599193..16756435 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
GRCh37/hg19 17p12-11.2(chr17:15632431-18726389)x1 copy number loss not provided [RCV001006874] Chr17:15632431..18726389 [GRCh37]
Chr17:17p12-11.2		 pathogenic
GRCh37/hg19 17p12-11.2(chr17:15659400-16591180)x1 copy number loss not provided [RCV000848863] Chr17:15659400..16591180 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
GRCh37/hg19 17p12-11.2(chr17:15722823-16796616)x3 copy number gain not provided [RCV000848922] Chr17:15722823..16796616 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
GRCh37/hg19 17p12-11.2(chr17:15722839-16763698)x3 copy number gain not provided [RCV001006875] Chr17:15722839..16763698 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
GRCh37/hg19 17p12-11.2(chr17:15688146-16591261)x3 copy number gain not provided [RCV000847058] Chr17:15688146..16591261 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
NM_018955.4(UBB):c.57C>T (p.Pro19=) single nucleotide variant not provided [RCV000889115] Chr17:16381964 [GRCh38]
Chr17:16285278 [GRCh37]
Chr17:17p11.2		 benign
NM_018955.4(UBB):c.297C>T (p.Ile99=) single nucleotide variant not provided [RCV000919339] Chr17:16382204 [GRCh38]
Chr17:16285518 [GRCh37]
Chr17:17p11.2		 likely benign
GRCh37/hg19 17p12-11.2(chr17:15730101-16591260)x3 copy number gain not provided [RCV001006876] Chr17:15730101..16591260 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
GRCh37/hg19 17p12-11.2(chr17:15810015-18537436)x1 copy number loss not provided [RCV001259296] Chr17:15810015..18537436 [GRCh37]
Chr17:17p12-11.2		 pathogenic
GRCh37/hg19 17p12-11.2(chr17:15688146-16756345)x1 copy number loss not provided [RCV001259297] Chr17:15688146..16756345 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
GRCh37/hg19 17p12-11.2(chr17:15688146-16769801)x3 copy number gain not provided [RCV001259298] Chr17:15688146..16769801 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
NC_000017.10:g.(?_16120521)_(16875409_?)dup duplication not provided [RCV001304726] Chr17:16120521..16875409 [GRCh37]
Chr17:17p11.2		 uncertain significance
Single allele complex PMP22-RAI1 contiguous gene duplication syndrome [RCV002280690] Chr17:14876984..22124952 [GRCh37]
Chr17:17p12-11.2		 pathogenic
Single allele duplication not specified [RCV002286369] Chr17:11915997..17892664 [GRCh38]
Chr17:17p12-11.2		 pathogenic
GRCh37/hg19 17p12-11.2(chr17:15722840-16653256)x3 copy number gain not provided [RCV002472908] Chr17:15722840..16653256 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
GRCh37/hg19 17p12-11.2(chr17:15754174-16657319)x3 copy number gain not provided [RCV002475858] Chr17:15754174..16657319 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
NM_018955.4(UBB):c.539C>T (p.Ala180Val) single nucleotide variant Inborn genetic diseases [RCV002925121] Chr17:16382446 [GRCh38]
Chr17:16285760 [GRCh37]
Chr17:17p11.2		 uncertain significance
GRCh37/hg19 17p12-11.2(chr17:15633208-16567624)x3 copy number gain not provided [RCV003485144] Chr17:15633208..16567624 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
GRCh37/hg19 17p11.2(chr17:16193908-16490573)x3 copy number gain not provided [RCV003485145] Chr17:16193908..16490573 [GRCh37]
Chr17:17p11.2		 uncertain significance
GRCh37/hg19 17p12-11.2(chr17:15694772-20582794)x1 copy number loss not provided [RCV003483314] Chr17:15694772..20582794 [GRCh37]
Chr17:17p12-11.2		 pathogenic
GRCh37/hg19 17p12-11.2(chr17:15759103-20564268)x1 copy number loss not specified [RCV003987246] Chr17:15759103..20564268 [GRCh37]
Chr17:17p12-11.2		 pathogenic
GRCh37/hg19 17p13.3-11.2(chr17:525-21510992)x3 copy number gain not specified [RCV003987215] Chr17:525..21510992 [GRCh37]
Chr17:17p13.3-11.2		 pathogenic
GRCh37/hg19 17p11.2(chr17:16096240-16317075)x3 copy number gain not specified [RCV003987248] Chr17:16096240..16317075 [GRCh37]
Chr17:17p11.2		 uncertain significance
GRCh37/hg19 17p12-11.2(chr17:15872060-16909718)x3 copy number gain not specified [RCV003987222] Chr17:15872060..16909718 [GRCh37]
Chr17:17p12-11.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1083
Count of miRNA genes:431
Interacting mature miRNAs:477
Transcripts:ENST00000302182, ENST00000395837, ENST00000395839, ENST00000535788, ENST00000577640, ENST00000577958, ENST00000578649, ENST00000578706
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
STS-X04803  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371716,285,915 - 16,286,113UniSTSGRCh37
Build 361716,226,640 - 16,226,838RGDNCBI36
Celera1716,188,840 - 16,189,038RGD
Cytogenetic Map17p12-p11.2UniSTS
HuRef1716,152,497 - 16,152,695UniSTS
GeneMap99-GB4 RH Map1793.83UniSTS
RH66787  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371716,286,037 - 16,286,200UniSTSGRCh37
GRCh371721,731,740 - 21,731,907UniSTSGRCh37
Build 361716,226,762 - 16,226,925RGDNCBI36
Celera1716,188,962 - 16,189,125RGD
Celera1719,848,689 - 19,848,856UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map17p11.2UniSTS
HuRef1716,152,619 - 16,152,782UniSTS
HuRef1720,932,170 - 20,932,337UniSTS
D17S1503E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371716,285,926 - 16,286,058UniSTSGRCh37
Build 361716,226,651 - 16,226,783RGDNCBI36
Celera1716,188,851 - 16,188,983RGD
Cytogenetic Map17p12-p11.2UniSTS
HuRef1716,152,508 - 16,152,640UniSTS
GDB:180946  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371716,284,642 - 16,285,198UniSTSGRCh37
Build 361716,225,367 - 16,225,923RGDNCBI36
Celera1716,187,567 - 16,188,123RGD
Cytogenetic Map17p12-p11.2UniSTS
HuRef1716,151,224 - 16,151,780UniSTS
RH1659  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371716,285,713 - 16,285,853UniSTSGRCh37
Build 361716,226,438 - 16,226,578RGDNCBI36
Celera1716,188,638 - 16,188,778RGD
Cytogenetic Map17p12-p11.2UniSTS
HuRef1716,152,295 - 16,152,435UniSTS
GeneMap99-GB4 RH Map17101.93UniSTS
D2S1561E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17p12-p11.2UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High 112 39 116 71 202 73 123 33 90 108 135 244 8 2 1
Medium 2319 2943 1606 550 1741 390 4229 2158 3616 310 1300 1360 163 1202 2788 3
Low 2 2 1 2 1 2 3 5 9 4 1 1
Below cutoff 1 2 1 4 1 1 16 1 13 4 3 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_023320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001281716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001281717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001281718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001281719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001281720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA659395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB089617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC093484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG548604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG718912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM554254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM662083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP307496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT020104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU596366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU661443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB480830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FB775576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ472200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY014043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X04803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000302182   ⟹   ENSP00000304697
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,381,091 - 16,382,740 (+)Ensembl
RefSeq Acc Id: ENST00000395837   ⟹   ENSP00000379178
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,381,341 - 16,382,740 (+)Ensembl
RefSeq Acc Id: ENST00000395839   ⟹   ENSP00000379180
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,381,290 - 16,382,740 (+)Ensembl
RefSeq Acc Id: ENST00000535788   ⟹   ENSP00000437475
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,381,091 - 16,382,739 (+)Ensembl
RefSeq Acc Id: ENST00000577640   ⟹   ENSP00000463156
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,380,931 - 16,382,526 (+)Ensembl
RefSeq Acc Id: ENST00000577958   ⟹   ENSP00000464594
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,380,798 - 16,382,038 (+)Ensembl
RefSeq Acc Id: ENST00000578649
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,381,095 - 16,382,745 (+)Ensembl
RefSeq Acc Id: ENST00000578706   ⟹   ENSP00000464510
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,381,465 - 16,382,186 (+)Ensembl
RefSeq Acc Id: ENST00000614404   ⟹   ENSP00000478771
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,381,465 - 16,382,742 (+)Ensembl
RefSeq Acc Id: NM_001281716   ⟹   NP_001268645
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381716,380,779 - 16,382,740 (+)NCBI
HuRef1716,150,689 - 16,152,641 (+)NCBI
CHM1_11716,293,846 - 16,295,798 (+)NCBI
T2T-CHM13v2.01716,283,097 - 16,285,058 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001281717   ⟹   NP_001268646
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381716,381,465 - 16,382,745 (+)NCBI
HuRef1716,150,689 - 16,152,641 (+)NCBI
CHM1_11716,294,518 - 16,295,798 (+)NCBI
T2T-CHM13v2.01716,283,783 - 16,285,063 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001281718   ⟹   NP_001268647
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381716,381,341 - 16,382,745 (+)NCBI
HuRef1716,150,689 - 16,152,641 (+)NCBI
CHM1_11716,294,394 - 16,295,798 (+)NCBI
T2T-CHM13v2.01716,283,659 - 16,285,063 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001281719   ⟹   NP_001268648
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381716,381,290 - 16,382,745 (+)NCBI
HuRef1716,150,689 - 16,152,641 (+)NCBI
CHM1_11716,294,343 - 16,295,798 (+)NCBI
T2T-CHM13v2.01716,283,608 - 16,285,063 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001281720   ⟹   NP_001268649
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381716,381,091 - 16,382,740 (+)NCBI
HuRef1716,150,689 - 16,152,641 (+)NCBI
CHM1_11716,294,150 - 16,295,798 (+)NCBI
T2T-CHM13v2.01716,283,409 - 16,285,058 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018955   ⟹   NP_061828
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381716,381,091 - 16,382,740 (+)NCBI
GRCh371716,284,367 - 16,286,059 (+)NCBI
Build 361716,225,092 - 16,226,779 (+)NCBI Archive
HuRef1716,150,689 - 16,152,641 (+)NCBI
CHM1_11716,293,850 - 16,295,798 (+)NCBI
T2T-CHM13v2.01716,283,409 - 16,285,058 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001268645 (Get FASTA)   NCBI Sequence Viewer  
  NP_001268646 (Get FASTA)   NCBI Sequence Viewer  
  NP_001268647 (Get FASTA)   NCBI Sequence Viewer  
  NP_001268648 (Get FASTA)   NCBI Sequence Viewer  
  NP_001268649 (Get FASTA)   NCBI Sequence Viewer  
  NP_061828 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH00379 (Get FASTA)   NCBI Sequence Viewer  
  AAH09301 (Get FASTA)   NCBI Sequence Viewer  
  AAH15127 (Get FASTA)   NCBI Sequence Viewer  
  AAH26301 (Get FASTA)   NCBI Sequence Viewer  
  AAH31027 (Get FASTA)   NCBI Sequence Viewer  
  AAH38999 (Get FASTA)   NCBI Sequence Viewer  
  AAH46123 (Get FASTA)   NCBI Sequence Viewer  
  AAV38907 (Get FASTA)   NCBI Sequence Viewer  
  ACV87175 (Get FASTA)   NCBI Sequence Viewer  
  BAC56955 (Get FASTA)   NCBI Sequence Viewer  
  BAG62524 (Get FASTA)   NCBI Sequence Viewer  
  CAA28495 (Get FASTA)   NCBI Sequence Viewer  
  CAV30745 (Get FASTA)   NCBI Sequence Viewer  
  EAX04501 (Get FASTA)   NCBI Sequence Viewer  
  EAX04502 (Get FASTA)   NCBI Sequence Viewer  
  EAX04503 (Get FASTA)   NCBI Sequence Viewer  
  EAX04504 (Get FASTA)   NCBI Sequence Viewer  
  EAX04505 (Get FASTA)   NCBI Sequence Viewer  
  EAX04506 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000304697
  ENSP00000304697.3
  ENSP00000379178
  ENSP00000379178.1
  ENSP00000379180
  ENSP00000379180.1
  ENSP00000437475.1
  ENSP00000463156
  ENSP00000463156.1
  ENSP00000464510.1
  ENSP00000464594.1
  ENSP00000478771
  ENSP00000478771.1
GenBank Protein P0CG47 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_061828   ⟸   NM_018955
- Peptide Label: precursor
- UniProtKB: P0CG47 (UniProtKB/Swiss-Prot),   Q5U5U6 (UniProtKB/TrEMBL),   Q9UFQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268645   ⟸   NM_001281716
- Peptide Label: precursor
- UniProtKB: P0CG47 (UniProtKB/Swiss-Prot),   Q5U5U6 (UniProtKB/TrEMBL),   Q9UFQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268649   ⟸   NM_001281720
- Peptide Label: precursor
- UniProtKB: P0CG47 (UniProtKB/Swiss-Prot),   Q5U5U6 (UniProtKB/TrEMBL),   Q9UFQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268648   ⟸   NM_001281719
- Peptide Label: precursor
- UniProtKB: P0CG47 (UniProtKB/Swiss-Prot),   Q5U5U6 (UniProtKB/TrEMBL),   Q9UFQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268647   ⟸   NM_001281718
- Peptide Label: precursor
- UniProtKB: P0CG47 (UniProtKB/Swiss-Prot),   Q5U5U6 (UniProtKB/TrEMBL),   Q9UFQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268646   ⟸   NM_001281717
- Peptide Label: precursor
- UniProtKB: P0CG47 (UniProtKB/Swiss-Prot),   Q5U5U6 (UniProtKB/TrEMBL),   Q9UFQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000437475   ⟸   ENST00000535788
RefSeq Acc Id: ENSP00000478771   ⟸   ENST00000614404
RefSeq Acc Id: ENSP00000463156   ⟸   ENST00000577640
RefSeq Acc Id: ENSP00000464594   ⟸   ENST00000577958
RefSeq Acc Id: ENSP00000464510   ⟸   ENST00000578706
RefSeq Acc Id: ENSP00000304697   ⟸   ENST00000302182
RefSeq Acc Id: ENSP00000379180   ⟸   ENST00000395839
RefSeq Acc Id: ENSP00000379178   ⟸   ENST00000395837
Protein Domains
Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P0CG47-F1-model_v2 AlphaFold P0CG47 1-229 view protein structure

Promoters
RGD ID:6794671
Promoter ID:HG_KWN:25127
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000395837,   ENST00000395839,   OTTHUMT00000130458,   UC010CPC.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361716,224,949 - 16,225,449 (+)MPROMDB
RGD ID:6853604
Promoter ID:EP15055
Type:single initiation site
Name:HS_UBB
Description:Ubiquitin B.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:DNA sequencing of a full-length processed pseudogene
Regulation:housekeeping gene; (induced by or strongly expressed in) heat shock
Position:
Human AssemblyChrPosition (strand)Source
Build 361716,225,134 - 16,225,194EPD
RGD ID:7234117
Promoter ID:EPDNEW_H22804
Type:initiation region
Name:UBB_2
Description:ubiquitin B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22805  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381716,380,779 - 16,380,839EPDNEW
RGD ID:7234119
Promoter ID:EPDNEW_H22805
Type:initiation region
Name:UBB_1
Description:ubiquitin B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22804  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381716,381,095 - 16,381,155EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12463 AgrOrtholog
COSMIC UBB COSMIC
Ensembl Genes ENSG00000170315 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000302182 ENTREZGENE
  ENST00000302182.8 UniProtKB/Swiss-Prot
  ENST00000395837 ENTREZGENE
  ENST00000395837.1 UniProtKB/Swiss-Prot
  ENST00000395839 ENTREZGENE
  ENST00000395839.5 UniProtKB/Swiss-Prot
  ENST00000535788.1 UniProtKB/TrEMBL
  ENST00000577640 ENTREZGENE
  ENST00000577640.1 UniProtKB/TrEMBL
  ENST00000577958.1 UniProtKB/TrEMBL
  ENST00000578706.5 UniProtKB/TrEMBL
  ENST00000614404 ENTREZGENE
  ENST00000614404.1 UniProtKB/Swiss-Prot
GTEx ENSG00000170315 GTEx
HGNC ID HGNC:12463 ENTREZGENE
Human Proteome Map UBB Human Proteome Map
InterPro Ubiquitin UniProtKB/Swiss-Prot
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/TrEMBL
KEGG Report hsa:7314 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 7314 ENTREZGENE
OMIM 191339 OMIM
PANTHER UBIQUITIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN-60S RIBOSOMAL PROTEIN L40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam ubiquitin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37113 PharmGKB
PRINTS UBIQUITIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE UBIQUITIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UBQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B4DV12_HUMAN UniProtKB/TrEMBL
  J3QKN0_HUMAN UniProtKB/TrEMBL
  J3QS39_HUMAN UniProtKB/TrEMBL
  J3QSA3_HUMAN UniProtKB/TrEMBL
  P0CG47 ENTREZGENE
  Q5U5U6 ENTREZGENE, UniProtKB/TrEMBL
  Q9UFQ0 ENTREZGENE, UniProtKB/TrEMBL
  UBB_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary P02248 UniProtKB/Swiss-Prot
  P02249 UniProtKB/Swiss-Prot
  P02250 UniProtKB/Swiss-Prot
  P62988 UniProtKB/Swiss-Prot
  Q29120 UniProtKB/Swiss-Prot
  Q6LBL4 UniProtKB/Swiss-Prot
  Q6LDU5 UniProtKB/Swiss-Prot
  Q8WYN8 UniProtKB/Swiss-Prot
  Q91887 UniProtKB/Swiss-Prot
  Q91888 UniProtKB/Swiss-Prot
  Q9BWD6 UniProtKB/Swiss-Prot
  Q9BX98 UniProtKB/Swiss-Prot
  Q9UEF2 UniProtKB/Swiss-Prot
  Q9UEG1 UniProtKB/Swiss-Prot
  Q9UEK8 UniProtKB/Swiss-Prot
  Q9UPK7 UniProtKB/Swiss-Prot