Or1j19 (olfactory receptor family 1 subfamily J member 19) - Rat Genome Database

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Gene: Or1j19 (olfactory receptor family 1 subfamily J member 19) Rattus norvegicus
Analyze
Symbol: Or1j19
Name: olfactory receptor family 1 subfamily J member 19
RGD ID: 1333882
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in signal transduction. Predicted to be active in plasma membrane. Orthologous to human OR1J2 (olfactory receptor family 1 subfamily J member 2); INTERACTS WITH bisphenol A; C60 fullerene; benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: ENSRNOG00000063795; olfactory receptor 348; olfactory receptor 409; olfactory receptor gene Olr409; olfactory receptor Olr409; Olfr348; Olr409
RGD Orthologs
Human
Mouse
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8340,727,817 - 40,732,751 (+)NCBIGRCr8
mRatBN7.2320,339,684 - 20,340,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl320,338,376 - 20,341,870 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl320,338,376 - 20,341,870 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx323,407,473 - 23,408,414 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0331,992,381 - 31,993,322 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0330,217,351 - 30,218,292 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0316,311,578 - 16,312,519 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl316,311,578 - 16,312,519 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0321,624,978 - 21,625,919 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4316,303,782 - 16,304,723 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1316,200,153 - 16,201,095 (+)NCBI
Celera315,011,121 - 15,012,062 (+)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Or1j19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8340,727,817 - 40,732,751 (+)NCBIGRCr8
mRatBN7.2320,339,684 - 20,340,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl320,338,376 - 20,341,870 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl320,338,376 - 20,341,870 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx323,407,473 - 23,408,414 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0331,992,381 - 31,993,322 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0330,217,351 - 30,218,292 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0316,311,578 - 16,312,519 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl316,311,578 - 16,312,519 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0321,624,978 - 21,625,919 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4316,303,782 - 16,304,723 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1316,200,153 - 16,201,095 (+)NCBI
Celera315,011,121 - 15,012,062 (+)NCBICelera
Cytogenetic Map3p11NCBI
OR1J2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389122,447,433 - 122,580,427 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9122,510,802 - 122,511,743 (+)EnsemblGRCh38hg38GRCh38
GRCh379125,273,081 - 125,274,022 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369124,312,902 - 124,313,843 (+)NCBINCBI36Build 36hg18NCBI36
Build 349122,352,634 - 122,353,576NCBI
Celera995,921,398 - 95,922,339 (+)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef994,887,776 - 94,888,717 (+)NCBIHuRef
CHM1_19125,421,124 - 125,422,066 (+)NCBICHM1_1
T2T-CHM13v2.09134,644,883 - 134,777,736 (+)NCBIT2T-CHM13v2.0
Or1j19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39236,676,539 - 36,677,480 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl236,674,288 - 36,680,010 (+)EnsemblGRCm39 Ensembl
GRCm38236,786,527 - 36,787,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl236,784,276 - 36,789,998 (+)EnsemblGRCm38mm10GRCm38
MGSCv37236,642,047 - 36,642,988 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36236,608,536 - 36,609,477 (+)NCBIMGSCv36mm8
Celera236,481,050 - 36,481,991 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
LOC129398736
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1916,834,832 - 16,835,773 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl9121,978,545 - 121,979,321 (+)Ensemblpanpan1.1panPan2
LOC103218887
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11217,120,813 - 17,122,515 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603525,939,709 - 25,941,436 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Or1j19
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:24
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000010341
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hepatobiliary system
High
Medium
Low
Below cutoff 2 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000010341   ⟹   ENSRNOP00000010341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl320,338,376 - 20,341,870 (+)Ensembl
Rnor_6.0 Ensembl316,311,578 - 16,312,519 (+)Ensembl
RefSeq Acc Id: NM_001000827   ⟹   NP_001000827
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8340,730,573 - 40,731,514 (+)NCBI
mRatBN7.2320,339,684 - 20,340,625 (+)NCBI
Rnor_6.0316,311,578 - 16,312,519 (+)NCBI
Rnor_5.0321,624,978 - 21,625,919 (+)NCBI
RGSC_v3.4316,303,782 - 16,304,723 (+)RGD
Celera315,011,121 - 15,012,062 (+)RGD
Sequence:
RefSeq Acc Id: XM_063284306   ⟹   XP_063140376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8340,727,817 - 40,732,751 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001000827 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140376 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL93121 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000010341.4
Reference Protein Sequences
RefSeq Acc Id: NP_001000827   ⟸   NM_001000827
- UniProtKB: F1LXW2 (UniProtKB/TrEMBL),   A6JUH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000010341   ⟸   ENSRNOT00000010341
RefSeq Acc Id: XP_063140376   ⟸   XM_063284306
- Peptide Label: isoform X1
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LXW2-F1-model_v2 AlphaFold F1LXW2 1-313 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333882 AgrOrtholog
BioCyc Gene G2FUF-49991 BioCyc
Ensembl Genes ENSRNOG00000048611 Ensembl
  ENSRNOG00000063795 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010341.5 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:405116 UniProtKB/TrEMBL
NCBI Gene 405116 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or1j19 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000048611 RatGTEx
  ENSRNOG00000063795 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6JUH6 ENTREZGENE, UniProtKB/TrEMBL
  F1LXW2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or1j19  olfactory receptor family 1 subfamily J member 19  Olr409  olfactory receptor 409  Symbol and Name Changed 1299863 APPROVED
2022-06-02 Olr409  olfactory receptor 409  Olfr348  olfactory receptor 348  Data merged from RGD:150345363 737654 PROVISIONAL
2022-01-06 Olfr348  olfactory receptor 348  ENSRNOG00000063795    Symbol and/or name change 19259462 PROVISIONAL
2021-08-31 ENSRNOG00000063795        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 Olr409  olfactory receptor 409   Olr409_predicted  olfactory receptor 409 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr409_predicted  olfactory receptor 409 (predicted)      Symbol and Name status set to approved 70820 APPROVED