Olr1004-ps (olfactory receptor pseudogene 1004) - Rat Genome Database

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Gene: Olr1004-ps (olfactory receptor pseudogene 1004) Rattus norvegicus
Analyze
Symbol: Olr1004-ps
Name: olfactory receptor pseudogene 1004
RGD ID: 1333706
Description: olfactory receptor pseudogene
Type: pseudo
RefSeq Status: REVIEWED
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr875,798,334 - 5,799,480 (-)NCBIGRCr8
mRatBN7.275,147,489 - 5,148,635 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.076,165,151 - 6,166,104 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
RGSC_v3.476,541,930 - 6,542,882 (-)ENTREZGENERGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.176,541,898 - 6,542,982 (-)NCBI
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.

Genomics

Variants

.
Variants in Olr1004-ps
14 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_003651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35163 BioCyc
Ensembl Genes ENSRNOG00000066748 ENTREZGENE
NCBI Gene 405360 ENTREZGENE
PhenoGen Olr1004-ps PhenoGen
RatGTEx ENSRNOG00000066748 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-02-04 Olr1004-ps  olfactory receptor pseudogene 1004      Symbol and Name status set to approved 70820 APPROVED