Or6n2 (olfactory receptor family 6 subfamily N member 2) - Rat Genome Database

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Gene: Or6n2 (olfactory receptor family 6 subfamily N member 2) Rattus norvegicus
Analyze
Symbol: Or6n2 (Ensembl: Olr1588)
Name: olfactory receptor family 6 subfamily N member 2 (Ensembl:olfactory receptor 1588)
RGD ID: 1333597
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Orthologous to human OR6N2 (olfactory receptor family 6 subfamily N member 2); INTERACTS WITH acrylamide; bisphenol A; 1,2-dichloroethane (ortholog).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1588; olfactory receptor gene Olr1588; olfactory receptor Olr1588; Olr1588
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81388,609,195 - 88,629,639 (+)NCBIGRCr8
mRatBN7.21386,076,857 - 86,087,100 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1388,593,545 - 88,594,498 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01389,993,815 - 89,994,768 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01387,178,556 - 87,179,509 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01392,143,751 - 92,147,738 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1392,146,586 - 92,147,539 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01396,663,615 - 96,664,568 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41389,821,254 - 89,822,207 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11390,010,137 - 90,011,091 (+)NCBI
Celera1385,688,298 - 85,689,251 (+)NCBICelera
Cytogenetic Map13q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Or6n2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81388,609,195 - 88,629,639 (+)NCBIGRCr8
mRatBN7.21386,076,857 - 86,087,100 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1388,593,545 - 88,594,498 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01389,993,815 - 89,994,768 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01387,178,556 - 87,179,509 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01392,143,751 - 92,147,738 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1392,146,586 - 92,147,539 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01396,663,615 - 96,664,568 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41389,821,254 - 89,822,207 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11390,010,137 - 90,011,091 (+)NCBI
Celera1385,688,298 - 85,689,251 (+)NCBICelera
Cytogenetic Map13q24NCBI
OR6N2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381158,774,222 - 158,781,204 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1158,774,222 - 158,781,204 (-)EnsemblGRCh38hg38GRCh38
GRCh371158,744,012 - 158,750,994 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,013,096 - 157,014,049 (-)NCBINCBI36Build 36hg18NCBI36
Build 341155,559,544 - 155,560,498NCBI
Celera1131,816,845 - 131,817,798 (-)NCBICelera
Cytogenetic Map1q23.1NCBI
HuRef1130,103,757 - 130,104,710 (-)NCBIHuRef
CHM1_11160,143,149 - 160,144,102 (-)NCBICHM1_1
T2T-CHM13v2.01157,911,304 - 157,918,300 (-)NCBIT2T-CHM13v2.0
Or6n2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,896,866 - 173,897,819 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,894,171 - 173,899,839 (+)EnsemblGRCm39 Ensembl
GRCm381174,069,300 - 174,070,253 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,066,605 - 174,072,273 (+)EnsemblGRCm38mm10GRCm38
MGSCv371175,999,431 - 176,000,384 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361175,906,030 - 175,906,928 (+)NCBIMGSCv36mm8
Celera1181,148,853 - 181,149,806 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map180.87NCBI
LOC102028847
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546810,647,981 - 10,648,934 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546810,647,981 - 10,648,934 (-)NCBIChiLan1.0ChiLan1.0
LOC100979847
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2191,065,714 - 91,072,740 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1190,809,602 - 90,816,643 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,136,240 - 134,149,018 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11137,927,394 - 137,928,347 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1137,927,394 - 137,928,347 (-)Ensemblpanpan1.1panPan2
OR6N2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13822,982,050 - 22,983,003 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3822,982,050 - 22,983,003 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3822,997,346 - 22,998,299 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03823,107,539 - 23,108,492 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3823,107,539 - 23,108,492 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13822,871,489 - 22,872,441 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03823,405,604 - 23,406,557 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03823,836,491 - 23,837,444 (+)NCBIUU_Cfam_GSD_1.0
LOC101972171
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050585,159,890 - 5,160,843 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367401,593,667 - 1,594,620 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367401,593,667 - 1,594,620 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100157689
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl491,485,019 - 91,491,554 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1491,482,220 - 91,491,942 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2499,464,698 - 99,483,889 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103223772
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1205,142,649 - 5,143,982 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl205,142,874 - 5,143,827 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660384,290,230 - 4,291,389 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Or6n2
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:46
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000004659
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat
1302791Stl29Serum triglyceride level QTL 293.30.0011blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)138473078886800898Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 12 1 18 1 5 6 9
Below cutoff 3 9 28 23 1 23 8 8 4 9 4 2 8

Sequence


RefSeq Acc Id: ENSRNOT00000004659   ⟹   ENSRNOP00000064821
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1392,146,586 - 92,147,539 (+)Ensembl
RefSeq Acc Id: NM_001000082   ⟹   NP_001000082
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81388,618,188 - 88,619,141 (+)NCBI
mRatBN7.21386,085,853 - 86,086,806 (+)NCBI
Rnor_6.01392,146,586 - 92,147,539 (+)NCBI
Rnor_5.01396,663,615 - 96,664,568 (+)NCBI
RGSC_v3.41389,821,254 - 89,822,207 (+)RGD
Celera1385,688,298 - 85,689,251 (+)RGD
Sequence:
RefSeq Acc Id: XM_008769782   ⟹   XP_008768004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81388,609,229 - 88,629,639 (+)NCBI
mRatBN7.21386,076,894 - 86,087,100 (+)NCBI
Rnor_6.01392,143,751 - 92,147,738 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090525   ⟹   XP_038946453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81388,609,195 - 88,629,639 (+)NCBI
mRatBN7.21386,076,857 - 86,087,100 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001000082 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768004 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946453 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL94753 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001000082   ⟸   NM_001000082
- UniProtKB: A6JG97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768004   ⟸   XM_008769782
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000064821   ⟸   ENSRNOT00000004659
RefSeq Acc Id: XP_038946453   ⟸   XM_039090525
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R5Y7-F1-model_v2 AlphaFold M0R5Y7 1-317 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333597 AgrOrtholog
BioCyc Gene G2FUF-17265 BioCyc
Ensembl Genes ENSRNOG00000003509 Ensembl
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:289250 UniProtKB/TrEMBL
NCBI Gene 289250 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  ODORANT RECEPTOR-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or6n2 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003509 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6JG97 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or6n2  olfactory receptor family 6 subfamily N member 2  Olr1588  olfactory receptor 1588  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1588  olfactory receptor 1588   Olr1588_predicted  olfactory receptor 1588 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1588_predicted  olfactory receptor 1588 (predicted)      Symbol and Name status set to approved 70820 APPROVED