Or7d11b-ps1 (olfactory receptor family 7 subfamily D member 11B, pseudogene 1) - Rat Genome Database

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Gene: Or7d11b-ps1 (olfactory receptor family 7 subfamily D member 11B, pseudogene 1) Rattus norvegicus
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Symbol: Or7d11b-ps1
Name: olfactory receptor family 7 subfamily D member 11B, pseudogene 1
RGD ID: 1332661
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; ammonium chloride; dibutyl phthalate.
Type: pseudo
RefSeq Status: REVIEWED
Previously known as: Gust27; olfactory receptor 1867; olfactory receptor pseudogene 1175; Olr1175-ps; Olr1867; Olr867
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8826,568,482 - 26,569,421 (+)NCBIGRCr8
mRatBN7.2818,292,237 - 18,293,176 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2818,292,105 - 18,293,329 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx822,316,422 - 22,317,643 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0820,614,250 - 20,615,471 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0818,521,915 - 18,523,136 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0820,565,864 - 20,566,803 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0820,640,109 - 20,641,048 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4818,755,584 - 18,756,808 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1818,755,615 - 18,756,755 (+)NCBI
Celera819,704,480 - 19,705,419 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Primary structure and cell-type specific expression of a gustatory G protein-coupled receptor related to olfactory receptors. Abe K, etal., J Biol Chem 1993 Jun 5;268(16):12033-9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Or7d11b-ps1
11 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: NM_001101022   ⟹   NP_001094492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2818,292,105 - 18,293,329 (+)NCBI
Protein Sequences
GenBank Protein BAA02252 (Get FASTA)   NCBI Sequence Viewer  
  P34987 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001094492   ⟸   NM_001101022
- Sequence:

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31504 BioCyc
Ensembl Genes ENSRNOG00000046689 Ensembl
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Olfact_rcpt UniProtKB/Swiss-Prot
KEGG Report rno:100036582 UniProtKB/Swiss-Prot
NCBI Gene 405161 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/Swiss-Prot
  OLFACTORY RECEPTOR 867 UniProtKB/Swiss-Prot
Pfam 7tm_4 UniProtKB/Swiss-Prot
PhenoGen Or7d11b-ps1 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  OLFACTORYR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000046689 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt OL867_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-14 Or7d11b-ps1  olfactory receptor family 7 subfamily D member 11B, pseudogene 1  Olr1867  olfactory receptor 1867  Data merged from RGD:1554299 737654 PROVISIONAL
2022-08-16 Or7d11b-ps1  olfactory receptor family 7 subfamily D member 11B, pseudogene 1  Olr1175-ps  olfactory receptor pseudogene 1175  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1867  olfactory receptor 1867   Olr1867_predicted  olfactory receptor 1867 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 Olr1867_predicted  olfactory receptor 1867 (predicted)  Olr1867  olfactory receptor 1867  Symbol and Name status set to approved 1299863 APPROVED
2005-10-18 Olr1867  olfactory receptor 1867      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-02-04 Olr1175-ps  olfactory receptor pseudogene 1175      Symbol and Name status set to approved 70820 APPROVED