Zfp57 (zinc finger protein 57) - Rat Genome Database

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Gene: Zfp57 (zinc finger protein 57) Mus musculus
Analyze
Symbol: Zfp57
Name: zinc finger protein 57
RGD ID: 1332036
MGI Page MGI
Description: Enables chromatin binding activity and double-stranded methylated DNA binding activity. Involved in autosome genomic imprinting; epigenetic programing of female pronucleus; and negative regulation of gene expression via CpG island methylation. Acts upstream of or within epigenetic programming in the zygotic pronuclei; genomic imprinting; and negative regulation of transcription by RNA polymerase II. Located in nucleus. Part of heterochromatin. Is expressed in several structures, including early conceptus; genitourinary system; liver; nervous system; and retina. Orthologous to human ZFP57 (ZFP57 zinc finger protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: G19; Zfp-57
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,307,060 - 37,326,196 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,312,055 - 37,321,527 (+)EnsemblGRCm39 Ensembl
GRCm381737,001,163 - 37,010,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,001,163 - 37,010,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371737,138,108 - 37,147,674 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361736,610,595 - 36,618,685 (+)NCBIMGSCv36mm8
Celera1740,424,834 - 40,434,322 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
heterochromatin  (IDA)
nucleus  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Identification and characterization of ZFP-57, a novel zinc finger transcription factor in the mammalian peripheral nervous system. Alonso MB, etal., J Biol Chem 2004 Jun 11;279(24):25653-64. Epub 2004 Apr 07.
2. On how mammalian transcription factors recognize methylated DNA. Buck-Koehntop BA and Defossez PA, Epigenetics. 2013 Feb;8(2):131-7. doi: 10.4161/epi.23632. Epub 2013 Jan 16.
3. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8120052   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15226823   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18287559   PMID:18799693   PMID:18854139   PMID:19799774   PMID:20412781   PMID:21267068   PMID:21677750   PMID:21731673   PMID:21873635   PMID:22055183  
PMID:22144682   PMID:22174793   PMID:22495301   PMID:22988430   PMID:23059534   PMID:23499433   PMID:24135613   PMID:24236546   PMID:25445595   PMID:25848000   PMID:26025256   PMID:26481358  
PMID:27257070   PMID:28476430   PMID:30602440   PMID:32325033   PMID:33500348   PMID:34226608   PMID:34321999   PMID:36004502  


Genomics

Comparative Map Data
Zfp57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,307,060 - 37,326,196 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,312,055 - 37,321,527 (+)EnsemblGRCm39 Ensembl
GRCm381737,001,163 - 37,010,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,001,163 - 37,010,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371737,138,108 - 37,147,674 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361736,610,595 - 36,618,685 (+)NCBIMGSCv36mm8
Celera1740,424,834 - 40,434,322 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
ZFP57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,672,392 - 29,681,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl629,672,483 - 29,681,155 (-)EnsemblGRCh38hg38GRCh38
GRCh37629,640,169 - 29,648,929 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,748,239 - 29,756,866 (-)NCBINCBI36Build 36hg18NCBI36
Celera631,246,246 - 31,251,015 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,447,209 - 29,452,012 (-)NCBIHuRef
CHM1_1629,642,261 - 29,647,014 (-)NCBICHM1_1
T2T-CHM13v2.0629,547,090 - 29,555,881 (-)NCBIT2T-CHM13v2.0
Zfp57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,526,565 - 1,546,480 (-)NCBIGRCr8
mRatBN7.2201,521,323 - 1,534,884 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,521,323 - 1,529,846 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx201,576,736 - 1,583,058 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,580,232 - 1,586,554 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,521,892 - 1,528,175 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0202,014,177 - 2,020,488 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,014,170 - 2,020,537 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0204,054,802 - 4,061,113 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,611,856 - 1,618,167 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1201,612,083 - 1,617,758 (-)NCBI
Celera202,231,911 - 2,238,222 (-)NCBICelera
Cytogenetic Map20p12NCBI
Zfp57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955583151,338 - 154,827 (-)NCBIChiLan1.0ChiLan1.0
LOC100977775
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2544,293,093 - 44,296,605 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1640,254,065 - 40,264,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,476,459 - 29,485,480 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1630,134,263 - 30,143,045 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,134,263 - 30,143,045 (-)Ensemblpanpan1.1panPan2
ZFP57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13526,267,358 - 26,269,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.03526,575,720 - 26,581,501 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13526,230,410 - 26,236,187 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03526,291,343 - 26,297,127 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03527,761,408 - 27,767,190 (-)NCBIUU_Cfam_GSD_1.0
Zfp57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,520,334 - 32,532,225 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367231,063,969 - 1,069,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP57
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,605,125 - 22,612,064 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,607,420 - 22,612,064 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2725,016,155 - 25,020,986 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,942,002 - 42,947,064 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604429,201,143 - 29,205,907 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475425,390,107 - 25,397,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1432
Count of miRNA genes:554
Interacting mature miRNAs:660
Transcripts:ENSMUST00000069250, ENSMUST00000089968, ENSMUST00000172502, ENSMUST00000172527, ENSMUST00000172540, ENSMUST00000172580, ENSMUST00000173588, ENSMUST00000173921, ENSMUST00000174016, ENSMUST00000174470, ENSMUST00000174524, ENSMUST00000174672, ENSMUST00000174747
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173206165237644775Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse

Markers in Region
UniSTS:237644  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381737,003,976 - 37,004,198UniSTSGRCm38
MGSCv371737,140,921 - 37,141,143UniSTSGRCm37
Celera1740,427,495 - 40,427,717UniSTS
Cytogenetic Map17B3UniSTS
Mog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381737,018,014 - 37,018,171UniSTSGRCm38
MGSCv371737,154,959 - 37,155,116UniSTSGRCm37
Celera1740,441,592 - 40,441,757UniSTS
Cytogenetic Map17B3UniSTS
Cytogenetic Map17CUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_033137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF532112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF532114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV579696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF731693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR956641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU463184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU463334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D21850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000069250   ⟹   ENSMUSP00000065811
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,313,417 - 37,321,524 (+)Ensembl
GRCm38.p6 Ensembl1737,002,525 - 37,010,632 (+)Ensembl
RefSeq Acc Id: ENSMUST00000089968   ⟹   ENSMUSP00000087414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,312,055 - 37,321,524 (+)Ensembl
GRCm38.p6 Ensembl1737,001,163 - 37,010,632 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172502
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,315,495 - 37,317,140 (+)Ensembl
GRCm38.p6 Ensembl1737,004,603 - 37,006,248 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172527   ⟹   ENSMUSP00000134116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,313,374 - 37,320,334 (+)Ensembl
GRCm38.p6 Ensembl1737,002,482 - 37,009,442 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172540   ⟹   ENSMUSP00000134024
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,315,414 - 37,320,607 (+)Ensembl
GRCm38.p6 Ensembl1737,004,522 - 37,009,715 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172580   ⟹   ENSMUSP00000133894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,313,562 - 37,320,638 (+)Ensembl
GRCm38.p6 Ensembl1737,002,670 - 37,009,746 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173588   ⟹   ENSMUSP00000135655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,313,488 - 37,320,715 (+)Ensembl
GRCm38.p6 Ensembl1737,002,596 - 37,009,823 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173921   ⟹   ENSMUSP00000133582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,313,504 - 37,316,958 (+)Ensembl
GRCm38.p6 Ensembl1737,002,612 - 37,006,066 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,313,461 - 37,314,706 (+)Ensembl
GRCm38.p6 Ensembl1737,002,569 - 37,003,814 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,313,469 - 37,314,584 (+)Ensembl
GRCm38.p6 Ensembl1737,002,577 - 37,003,692 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174524   ⟹   ENSMUSP00000134418
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,313,930 - 37,321,527 (+)Ensembl
GRCm38.p6 Ensembl1737,003,038 - 37,010,635 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174672   ⟹   ENSMUSP00000133821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,314,558 - 37,321,524 (+)Ensembl
GRCm38.p6 Ensembl1737,003,666 - 37,010,632 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174747   ⟹   ENSMUSP00000133460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,313,446 - 37,316,973 (+)Ensembl
GRCm38.p6 Ensembl1737,002,554 - 37,006,081 (+)Ensembl
RefSeq Acc Id: NM_001013745   ⟹   NP_001013767
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,313,417 - 37,321,621 (+)NCBI
GRCm381737,002,525 - 37,010,729 (+)NCBI
MGSCv371737,138,108 - 37,147,674 (+)RGD
Celera1740,424,834 - 40,434,322 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001168501   ⟹   NP_001161973
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,313,374 - 37,321,621 (+)NCBI
GRCm381737,002,482 - 37,010,729 (+)NCBI
MGSCv371737,138,108 - 37,147,674 (+)RGD
Celera1740,424,834 - 40,434,322 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001168502   ⟹   NP_001161974
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,312,055 - 37,321,621 (+)NCBI
GRCm381737,001,163 - 37,010,729 (+)ENTREZGENE
MGSCv371737,138,108 - 37,147,674 (+)RGD
Celera1740,424,834 - 40,434,322 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_033137
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,314,558 - 37,321,621 (+)NCBI
GRCm381737,003,666 - 37,010,729 (+)NCBI
MGSCv371737,138,108 - 37,147,674 (+)RGD
Celera1740,424,834 - 40,434,322 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036160582   ⟹   XP_036016475
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,307,060 - 37,326,196 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160583   ⟹   XP_036016476
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,307,060 - 37,326,196 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160584   ⟹   XP_036016477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,307,060 - 37,326,196 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001013767   ⟸   NM_001013745
- Peptide Label: isoform 1
- UniProtKB: Q62515 (UniProtKB/Swiss-Prot),   Q3UT94 (UniProtKB/Swiss-Prot),   Q6JPI1 (UniProtKB/Swiss-Prot),   Q8C6P8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161974   ⟸   NM_001168502
- Peptide Label: isoform 2
- UniProtKB: Q8C6P8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161973   ⟸   NM_001168501
- Peptide Label: isoform 1
- UniProtKB: Q62515 (UniProtKB/Swiss-Prot),   Q3UT94 (UniProtKB/Swiss-Prot),   Q6JPI1 (UniProtKB/Swiss-Prot),   Q8C6P8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000134116   ⟸   ENSMUST00000172527
RefSeq Acc Id: ENSMUSP00000134024   ⟸   ENSMUST00000172540
RefSeq Acc Id: ENSMUSP00000133894   ⟸   ENSMUST00000172580
RefSeq Acc Id: ENSMUSP00000134418   ⟸   ENSMUST00000174524
RefSeq Acc Id: ENSMUSP00000133460   ⟸   ENSMUST00000174747
RefSeq Acc Id: ENSMUSP00000133821   ⟸   ENSMUST00000174672
RefSeq Acc Id: ENSMUSP00000135655   ⟸   ENSMUST00000173588
RefSeq Acc Id: ENSMUSP00000087414   ⟸   ENSMUST00000089968
RefSeq Acc Id: ENSMUSP00000133582   ⟸   ENSMUST00000173921
RefSeq Acc Id: ENSMUSP00000065811   ⟸   ENSMUST00000069250
RefSeq Acc Id: XP_036016476   ⟸   XM_036160583
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036016475   ⟸   XM_036160582
- Peptide Label: isoform X1
- UniProtKB: Q8C6P8 (UniProtKB/Swiss-Prot),   Q62515 (UniProtKB/Swiss-Prot),   Q3UT94 (UniProtKB/Swiss-Prot),   Q6JPI1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036016477   ⟸   XM_036160584
- Peptide Label: isoform X2
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C6P8-F1-model_v2 AlphaFold Q8C6P8 1-421 view protein structure

Promoters
RGD ID:13676036
Promoter ID:EPDNEW_M22166
Type:initiation region
Name:Zfp57_1
Description:Mus musculus zinc finger protein 57 , transcript variant 4, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22167  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381737,002,554 - 37,002,614EPDNEW
RGD ID:13676034
Promoter ID:EPDNEW_M22167
Type:single initiation site
Name:Zfp57_2
Description:Mus musculus zinc finger protein 57 , transcript variant 4, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22166  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381737,003,686 - 37,003,746EPDNEW
RGD ID:6828929
Promoter ID:MM_KWN:23422
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001168501,   UC008CLV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361737,139,329 - 37,139,829 (+)MPROMDB
RGD ID:6828928
Promoter ID:MM_KWN:23423
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   MEF_B4
Transcripts:NR_033137
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361737,140,026 - 37,141,237 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99204 AgrOrtholog
Ensembl Genes ENSMUSG00000036036 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000069250 ENTREZGENE
  ENSMUST00000069250.14 UniProtKB/Swiss-Prot
  ENSMUST00000089968 ENTREZGENE
  ENSMUST00000089968.13 UniProtKB/Swiss-Prot
  ENSMUST00000172527.8 UniProtKB/TrEMBL
  ENSMUST00000172540.2 UniProtKB/TrEMBL
  ENSMUST00000172580.8 UniProtKB/TrEMBL
  ENSMUST00000173588.8 UniProtKB/TrEMBL
  ENSMUST00000173921.8 UniProtKB/TrEMBL
  ENSMUST00000174524 ENTREZGENE
  ENSMUST00000174524.8 UniProtKB/Swiss-Prot
  ENSMUST00000174672.2 UniProtKB/Swiss-Prot
  ENSMUST00000174747.8 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22715 UniProtKB/Swiss-Prot
MGD MGI:99204 ENTREZGENE
NCBI Gene 22715 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIKEN CDNA 1700020N01 GENE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfp57 PhenoGen
PROSITE KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3UWX4_MOUSE UniProtKB/TrEMBL
  G3UX77_MOUSE UniProtKB/TrEMBL
  G3UY05_MOUSE UniProtKB/TrEMBL
  G3UYC1_MOUSE UniProtKB/TrEMBL
  G3UYK1_MOUSE UniProtKB/TrEMBL
  H3BL53_MOUSE UniProtKB/TrEMBL
  Q3UT94 ENTREZGENE
  Q62515 ENTREZGENE
  Q6JPI1 ENTREZGENE
  Q8C6P8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UT94 UniProtKB/Swiss-Prot
  Q62515 UniProtKB/Swiss-Prot
  Q6JPI1 UniProtKB/Swiss-Prot