Bicc1 (BicC family RNA binding protein 1) - Rat Genome Database

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Gene: Bicc1 (BicC family RNA binding protein 1) Mus musculus
Analyze
Symbol: Bicc1
Name: BicC family RNA binding protein 1
RGD ID: 1316666
MGI Page MGI
Description: Predicted to enable RNA binding activity. Acts upstream of or within determination of left/right symmetry; heart development; and kidney development. Predicted to be active in cytoplasm. Is expressed in several structures, including central nervous system; embryo mesenchyme; gonad; intraembryonic coelom; and sensory organ. Used to study autosomal dominant polycystic kidney disease; autosomal recessive polycystic kidney disease; cystic kidney disease; and visceral heterotaxy. Human ortholog(s) of this gene implicated in diffuse cystic renal dysplasia. Orthologous to human BICC1 (BicC family RNA binding protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Bic-; Bic-C; bicaudal C homolog 1; bpk; jcp; jcpk; juvenile congenital polycystic kidney disease; MGC124370; polycystic kidney mutation of BALB/c origin; protein bicaudal C homolog 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391070,758,660 - 70,995,581 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1070,758,662 - 70,995,530 (-)EnsemblGRCm39 Ensembl
GRCm381070,922,830 - 71,159,690 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1070,922,832 - 71,159,700 (-)EnsemblGRCm38mm10GRCm38
MGSCv371070,387,834 - 70,622,382 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361070,320,386 - 70,554,934 (-)NCBIMGSCv36mm8
Celera1072,006,733 - 72,235,068 (-)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1036.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-Nitrobenzanthrone  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butan-1-ol  (ISO)
butanal  (ISO)
choline  (EXP)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (EXP,ISO)
dexamethasone  (EXP)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (ISO)
folic acid  (EXP)
FR900359  (ISO)
glycidyl methacrylate  (ISO)
inulin  (EXP)
itraconazole  (EXP)
ketoconazole  (EXP)
L-methionine  (EXP)
leflunomide  (ISO)
melphalan  (ISO)
methoxychlor  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
orphenadrine  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
permethrin  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tributylstannane  (ISO)
triclosan  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
valproic acid  (ISO)
vancomycin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bile duct morphology  (IAGP)
abnormal biliary ductule morphology  (IAGP)
abnormal embryo turning  (IEA)
abnormal embryonic cilium location or orientation  (IAGP)
abnormal heart looping  (IEA)
abnormal heart morphology  (IEA)
abnormal interlobular bile duct morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal liver morphology  (IAGP)
abnormal liver parenchyma morphology  (IAGP)
abnormal motile primary cilium physiology  (IAGP)
abnormal nephrogenic zone morphology  (IAGP)
abnormal portal lobule morphology  (IAGP)
abnormal portal triad morphology  (IAGP)
atrioventricular septal defect  (IEA)
bile duct hyperplasia  (IAGP)
biliary cyst  (IAGP)
d-loop transposition of the great arteries  (IEA)
decreased birth body size  (IAGP)
decreased body size  (IAGP)
decreased locomotor activity  (IEA)
dextrocardia  (IEA)
dilated bile duct  (IAGP)
dilated gallbladder  (IAGP)
dilated pancreatic duct  (IAGP)
distended abdomen  (IAGP)
double outlet right ventricle  (IEA)
edema  (IEA)
enlarged gallbladder  (IAGP)
enlarged kidney  (IAGP)
heterotaxia  (IEA)
increased blood urea nitrogen level  (IAGP)
increased glomerular capsule space  (IAGP)
infertility  (IEA)
jaundice  (IAGP)
kidney cortex cyst  (IAGP)
kidney cyst  (IAGP)
kidney failure  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
lethargy  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
pale liver  (IAGP)
pancreas cyst  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
polycystic kidney  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
preweaning lethality, incomplete penetrance  (IEA)
situs ambiguus  (IAGP)
situs inversus  (IAGP)
situs inversus totalis  (IEA)
small kidney  (IEA)
ventricular septal defect  (IAGP)
weakness  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1557392   PMID:7661851   PMID:7723240   PMID:8341011   PMID:8476712   PMID:8660967   PMID:8812475   PMID:8887273   PMID:8889548   PMID:10349636   PMID:10864581   PMID:11042159  
PMID:11076861   PMID:11217851   PMID:11231089   PMID:11274233   PMID:11544199   PMID:11944981   PMID:12477932   PMID:12584442   PMID:12682776   PMID:14559716   PMID:14600027   PMID:15149315  
PMID:15489334   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16567633   PMID:16602821   PMID:17251353   PMID:18182784   PMID:19324013   PMID:19666828   PMID:20215348   PMID:20219263  
PMID:20519437   PMID:21518865   PMID:21873635   PMID:22008794   PMID:22258617   PMID:22641646   PMID:24594709   PMID:24789909   PMID:25671767   PMID:25715394   PMID:25715395   PMID:25807483  
PMID:25888842   PMID:25922073   PMID:26217012   PMID:26856660   PMID:27002738   PMID:29395339   PMID:29513071   PMID:29717938   PMID:29995892   PMID:30733279   PMID:33737325   PMID:34210974  
PMID:35756494   PMID:37733651  


Genomics

Comparative Map Data
Bicc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391070,758,660 - 70,995,581 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1070,758,662 - 70,995,530 (-)EnsemblGRCm39 Ensembl
GRCm381070,922,830 - 71,159,690 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1070,922,832 - 71,159,700 (-)EnsemblGRCm38mm10GRCm38
MGSCv371070,387,834 - 70,622,382 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361070,320,386 - 70,554,934 (-)NCBIMGSCv36mm8
Celera1072,006,733 - 72,235,068 (-)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1036.75NCBI
BICC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381058,512,220 - 58,831,435 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1058,512,872 - 58,831,435 (+)EnsemblGRCh38hg38GRCh38
GRCh371060,272,632 - 60,591,195 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361059,942,910 - 60,258,851 (+)NCBINCBI36Build 36hg18NCBI36
Celera1053,537,852 - 53,853,737 (+)NCBICelera
Cytogenetic Map10q21.1NCBI
HuRef1054,263,360 - 54,579,402 (+)NCBIHuRef
CHM1_11060,554,682 - 60,870,585 (+)NCBICHM1_1
T2T-CHM13v2.01059,367,047 - 59,685,442 (+)NCBIT2T-CHM13v2.0
Bicc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82017,448,745 - 17,685,887 (+)NCBIGRCr8
mRatBN7.22017,449,639 - 17,686,775 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2017,449,560 - 17,686,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2018,257,264 - 18,411,484 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02017,611,981 - 17,766,205 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02018,084,941 - 18,239,159 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02018,780,605 - 18,940,429 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2018,780,605 - 18,940,408 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02020,910,387 - 21,094,056 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42018,288,079 - 18,477,016 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12018,362,469 - 18,490,478 (+)NCBI
Celera2018,929,366 - 19,081,174 (+)NCBICelera
Cytogenetic Map20p11NCBI
Bicc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542512,333,747 - 12,519,872 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542512,237,611 - 12,522,321 (+)NCBIChiLan1.0ChiLan1.0
BICC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2870,718,794 - 71,044,225 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11070,727,719 - 71,049,535 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01055,044,812 - 55,366,668 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11057,539,710 - 57,568,882 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1057,264,973 - 57,583,404 (+)Ensemblpanpan1.1panPan2
BICC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1410,735,307 - 11,006,650 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl410,735,306 - 11,066,274 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha410,927,931 - 11,198,411 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0410,992,359 - 11,262,878 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl410,991,801 - 11,262,608 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1410,975,790 - 11,246,137 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0411,096,467 - 11,366,931 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0411,405,347 - 11,676,261 (+)NCBIUU_Cfam_GSD_1.0
Bicc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721370,124,835 - 70,398,621 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366144,211,083 - 4,484,868 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366144,211,090 - 4,484,862 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1461,793,332 - 62,127,094 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11461,793,362 - 62,128,424 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21466,669,316 - 66,911,540 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BICC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1972,469,498 - 72,789,106 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl972,469,323 - 72,789,167 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604833,363,225 - 33,688,871 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bicc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247914,732,581 - 5,057,912 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bicc1
8545 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:938
Count of miRNA genes:514
Interacting mature miRNAs:602
Transcripts:ENSMUST00000014473, ENSMUST00000131445, ENSMUST00000143791, ENSMUST00000144740
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103377599670835830Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
4141070Ltgq1_mliver triglyceride QTL 1 (mouse)Not determined4123732675237326Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse

Markers in Region
Bicc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B5.3UniSTS
cM Map1038.6UniSTS
Bicc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B5.3UniSTS
Bicc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B5.3UniSTS
cM Map1038.6UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001347189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC079680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC087890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC087891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02026420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF319464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC111523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM936635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX637408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX207788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX237497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02008163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000014473   ⟹   ENSMUSP00000014473
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1070,760,932 - 70,995,520 (-)Ensembl
GRCm38.p6 Ensembl1070,925,102 - 71,159,690 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131445   ⟹   ENSMUSP00000119137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1070,760,932 - 70,982,690 (-)Ensembl
GRCm38.p6 Ensembl1070,925,102 - 71,146,860 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143791   ⟹   ENSMUSP00000123201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1070,758,662 - 70,995,530 (-)Ensembl
GRCm38.p6 Ensembl1070,922,832 - 71,159,700 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1070,770,332 - 70,784,319 (-)Ensembl
GRCm38.p6 Ensembl1070,934,502 - 70,948,489 (-)Ensembl
RefSeq Acc Id: NM_001347189   ⟹   NP_001334118
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391070,758,660 - 70,995,520 (-)NCBI
GRCm381070,922,830 - 71,159,690 (-)NCBI
Sequence:
RefSeq Acc Id: NM_031397   ⟹   NP_113574
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391070,758,660 - 70,995,520 (-)NCBI
GRCm381070,922,830 - 71,159,690 (-)NCBI
MGSCv371070,387,834 - 70,622,382 (-)RGD
Celera1072,006,733 - 72,235,068 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036156124   ⟹   XP_036012017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391070,758,662 - 70,995,581 (-)NCBI
Sequence:
RefSeq Acc Id: NP_113574   ⟸   NM_031397
- Peptide Label: isoform 1
- UniProtKB: Q6P6K3 (UniProtKB/Swiss-Prot),   Q8C286 (UniProtKB/Swiss-Prot),   Q99MQ1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001334118   ⟸   NM_001347189
- Peptide Label: isoform 2
- UniProtKB: G3X8S6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000123201   ⟸   ENSMUST00000143791
RefSeq Acc Id: ENSMUSP00000014473   ⟸   ENSMUST00000014473
RefSeq Acc Id: ENSMUSP00000119137   ⟸   ENSMUST00000131445
RefSeq Acc Id: XP_036012017   ⟸   XM_036156124
- Peptide Label: isoform X1
Protein Domains
KH   SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99MQ1-F1-model_v2 AlphaFold Q99MQ1 1-977 view protein structure

Promoters
RGD ID:6819054
Promoter ID:MM_KWN:4484
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000061090
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361070,411,731 - 70,412,231 (-)MPROMDB
RGD ID:6819055
Promoter ID:MM_KWN:4486
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:UC007FOF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361070,609,496 - 70,609,996 (-)MPROMDB
RGD ID:6819057
Promoter ID:MM_KWN:4487
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:OTTMUST00000060990,   UC007FOH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361070,622,561 - 70,623,061 (-)MPROMDB
RGD ID:8672258
Promoter ID:EPDNEW_M14159
Type:single initiation site
Name:Bicc1_2
Description:Mus musculus BicC family RNA binding protein 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14160  EPDNEW_M14161  EPDNEW_M14162  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381070,948,502 - 70,948,562EPDNEW
RGD ID:8672260
Promoter ID:EPDNEW_M14160
Type:multiple initiation site
Name:Bicc1_4
Description:Mus musculus BicC family RNA binding protein 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14159  EPDNEW_M14161  EPDNEW_M14162  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381071,073,152 - 71,073,212EPDNEW
RGD ID:8672262
Promoter ID:EPDNEW_M14161
Type:single initiation site
Name:Bicc1_3
Description:Mus musculus BicC family RNA binding protein 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14159  EPDNEW_M14160  EPDNEW_M14162  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381071,146,858 - 71,146,918EPDNEW
RGD ID:8672264
Promoter ID:EPDNEW_M14162
Type:initiation region
Name:Bicc1_1
Description:Mus musculus BicC family RNA binding protein 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14159  EPDNEW_M14160  EPDNEW_M14161  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381071,159,691 - 71,159,751EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1933388 AgrOrtholog
Ensembl Genes ENSMUSG00000014329 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000014473 ENTREZGENE
  ENSMUST00000014473.6 UniProtKB/TrEMBL
  ENSMUST00000131445.8 UniProtKB/Swiss-Prot
  ENSMUST00000143791 ENTREZGENE
  ENSMUST00000143791.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.310.270 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BICC1_KH-I_rpt1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BICC1_KH-I_rpt2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BICC1_KH-I_rpt3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BICC1_SAM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:83675 UniProtKB/Swiss-Prot
MGD MGI:1933388 ENTREZGENE
NCBI Gene 83675 ENTREZGENE
PANTHER PROTEIN BICAUDAL C HOMOLOG 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCP160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bicc1 PhenoGen
PROSITE KH_TYPE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt BICC1_MOUSE UniProtKB/Swiss-Prot
  G3X8S6 ENTREZGENE, UniProtKB/TrEMBL
  Q3UQ98_MOUSE UniProtKB/TrEMBL
  Q6P6K3 ENTREZGENE
  Q8C286 ENTREZGENE
  Q99MQ1 ENTREZGENE
UniProt Secondary Q6P6K3 UniProtKB/Swiss-Prot
  Q8C286 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 Bicc1  BicC family RNA binding protein 1    bicaudal C homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED