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Gene: Zfp35 (zinc finger protein 35) Rattus norvegicus

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Symbol:

Zfp35

Name:

zinc finger protein 35

RGD ID:

1312031

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF79 (zinc finger protein 79); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC307547; MGC108880; Zfp239; zinc finger protein 239; zinc finger protein 271

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	15,543,604 - 15,559,084 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	15,543,516 - 15,559,837 (+)	Ensembl				GRCr8
mRatBN7.2	18	15,268,852 - 15,284,334 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	15,268,814 - 15,285,088 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	15,453,988 - 15,469,485 (+)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	16,236,692 - 16,252,190 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	15,526,432 - 15,541,938 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	18	15,813,173 - 15,828,676 (+)	NCBI
Lyon_Normotensive	18	15,416,028 - 15,431,525 (+)	NCBI
Lyon_Hypertensive	18	15,415,611 - 15,431,110 (+)	NCBI
F344_StmMcwi	18	15,431,664 - 15,447,151 (+)	NCBI
Rnor_6.0	18	15,883,182 - 15,898,803 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	15,883,182 - 15,898,821 (+)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	18	15,648,791 - 15,664,412 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	15,749,584 - 15,765,238 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	15,217,050 - 15,232,381 (+)	NCBI		Celera
RGSC_v3.1	18	15,776,229 - 15,791,877 (+)	NCBI
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

colon adenocarcinoma (ISO)

hepatocellular carcinoma (ISO)

melanoma (ISO)

ovarian serous cystadenocarcinoma (ISO)

stomach cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

cadmium dichloride (ISO)

camptothecin (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

crocidolite asbestos (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

iron dichloride (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

Nutlin-3 (ISO)

paracetamol (EXP,ISO)

quercetin (ISO)

resorcinol (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone (ISO)

thioacetamide (EXP)

triadimefon (EXP)

triphenyl phosphate (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA)

sequence-specific DNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:19783676

Genomics

Comparative Map Data

Zfp35
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	15,543,604 - 15,559,084 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	15,543,516 - 15,559,837 (+)	Ensembl				GRCr8
mRatBN7.2	18	15,268,852 - 15,284,334 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	15,268,814 - 15,285,088 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	15,453,988 - 15,469,485 (+)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	16,236,692 - 16,252,190 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	15,526,432 - 15,541,938 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	18	15,813,173 - 15,828,676 (+)	NCBI
Lyon_Normotensive	18	15,416,028 - 15,431,525 (+)	NCBI
Lyon_Hypertensive	18	15,415,611 - 15,431,110 (+)	NCBI
F344_StmMcwi	18	15,431,664 - 15,447,151 (+)	NCBI
Rnor_6.0	18	15,883,182 - 15,898,803 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	15,883,182 - 15,898,821 (+)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	18	15,648,791 - 15,664,412 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	15,749,584 - 15,765,238 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	15,217,050 - 15,232,381 (+)	NCBI		Celera
RGSC_v3.1	18	15,776,229 - 15,791,877 (+)	NCBI
Cytogenetic Map	18	p12	NCBI

ZNF79
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	127,424,382 - 127,445,372 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	127,424,374 - 127,449,728 (+)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	9	130,186,661 - 130,207,651 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	129,226,482 - 129,247,471 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	127,266,214 - 127,287,204	NCBI
Celera	9	100,837,528 - 100,858,526 (+)	NCBI		Celera
Cytogenetic Map	9	q33.3	NCBI
HuRef	9	99,802,632 - 99,823,635 (+)	NCBI		HuRef
CHM1_1	9	130,337,099 - 130,358,946 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	139,631,324 - 139,652,321 (+)	NCBI		T2T-CHM13v2.0

2610008E11Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	78,900,208 - 78,933,434 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	78,900,202 - 78,933,454 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	79,064,374 - 79,097,600 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	79,064,374 - 79,097,600 (-)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	10	78,527,119 - 78,560,345 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	78,467,503 - 78,500,686 (-)	NCBI		MGSCv36	mm8
Celera	10	80,083,789 - 80,116,964 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Znf79
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955419	1,157,721 - 1,168,330 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF79
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	11,908,973 - 11,929,994 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	11,911,311 - 11,932,400 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	98,548,125 - 98,565,632 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	127,238,713 - 127,239,349 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

ZNF79
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	55,900,765 - 55,916,326 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	55,900,911 - 55,915,770 (-)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	55,104,542 - 55,120,100 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	56,822,116 - 56,837,840 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	56,822,272 - 56,837,818 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	55,581,820 - 55,597,582 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	55,896,859 - 55,912,625 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	55,987,591 - 56,003,544 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

ZNF79
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	267,942,101 - 267,966,192 (+)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	1	267,941,953 - 267,959,754 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	301,852,461 - 301,870,278 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF79
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	12	102,832,343 - 102,855,721 (+)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666079	5,510,648 - 5,531,887 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	12	10,683,634 - 10,704,116 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	10,683,852 - 10,698,004 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Variants

Variants in Zfp35
110 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	36
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000073081
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	12219237	26822399	Rat
2301409	Cm70	Cardiac mass QTL 70		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	18	7065728	52065728	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	12216684	31644508	Rat
12904716	Am21	Aortic mass QTL 21		0.005	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	7065728	52065728	Rat
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	26032889	Rat
12904714	Cm131	Cardiac mass QTL 131		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	7065728	52065728	Rat
12904715	Cm132	Cardiac mass QTL 132		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	7065728	52065728	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	1	25071266	Rat
6903356	Bp354	Blood pressure QTL 354	4.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	15642423	Rat
6903345	Bp349	Blood pressure QTL 349	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	15226101	42690662	Rat
6903347	Bp350	Blood pressure QTL 350	4.4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5460455	42690191	Rat
6903349	Bp351	Blood pressure QTL 351	3.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
6903351	Bp352	Blood pressure QTL 352	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	12216684	31644508	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	44930869	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	12219237	26822399	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	12066482	57066482	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	1	25022372	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	12219237	26822399	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	12219237	26822399	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	3811902	30809809	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	12219237	26822399	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	12219237	26822399	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34566578	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	12219237	26822399	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	26032889	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4482648	49482648	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	54490981	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
11565454	Kidm59	Kidney mass QTL 59		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	7065728	52065728	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34566578	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	4307354	49307354	Rat

Markers in Region

D18Mit14

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	15,275,597 - 15,275,693 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	15,889,927 - 15,890,022	NCBI	Rnor6.0
Rnor_5.0	18	15,655,536 - 15,655,631	UniSTS	Rnor5.0
RGSC_v3.4	18	15,756,328 - 15,756,424	RGD	RGSC3.4
RGSC_v3.4	18	15,756,329 - 15,756,424	UniSTS	RGSC3.4
Celera	18	15,223,795 - 15,223,890	UniSTS
RGSC_v3.1	18	15,782,975 - 15,783,070	RGD
RH 3.4 Map	18	177.6	UniSTS
RH 3.4 Map	18	177.6	RGD
RH 2.0 Map	18	706.5	RGD
SHRSP x BN Map	18	8.17	RGD
FHH x ACI Map	18	10.57	RGD
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
273	156	728	1584	4034	1003	1718	130	866	482	848	156	5352	2568	445	3947	38	1382	738	907	160	158

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000076137 ⟹ ENSRNOP00000067944

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	15,543,516 - 15,559,837 (+)	Ensembl
mRatBN7.2 Ensembl	18	15,268,814 - 15,285,088 (+)	Ensembl
Rnor_6.0 Ensembl	18	15,883,182 - 15,898,821 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088353 ⟹ ENSRNOP00000071577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	15,883,182 - 15,898,796 (+)	Ensembl

RefSeq Acc Id:

NM_001013141 ⟹ NP_001013159

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	15,543,604 - 15,559,084 (+)	NCBI
mRatBN7.2	18	15,268,852 - 15,284,334 (+)	NCBI
Dahl_SR_JrHsd	18	15,813,173 - 15,828,676 (+)	NCBI
Lyon_Normotensive	18	15,416,028 - 15,431,525 (+)	NCBI
Lyon_Hypertensive	18	15,415,611 - 15,431,110 (+)	NCBI
F344_StmMcwi	18	15,431,664 - 15,447,151 (+)	NCBI
Rnor_6.0	18	15,883,182 - 15,898,803 (+)	NCBI
Rnor_5.0	18	15,648,791 - 15,664,412 (+)	NCBI
RGSC_v3.4	18	15,749,584 - 15,765,238 (+)	RGD
Celera	18	15,217,050 - 15,232,381 (+)	RGD

Sequence:

show sequence

CGGTTCCTGGCCTAACATTCTGTGGACAGCAAGTCTGCTCACTGGTCCTTTCATTCAACTGCAT
GAACGTCCGAAATGTTGGGGCTGATGCCATAACGGAGTGGATGAGCCCACACCAATCAGCCTGC
AGAGCTGGAAAAGAGATACCTGACCTAAACTCTAGTCTCAGAAATGACATCACTCCTCTGTACA
ACGATTCTCATCTGAGCTCGGAGCTACCAAGTTGCCTGCTGGCTTCAGACCATTATGTGGACAA
GAGGATCCTACAGAAGAAATGGTAATTCTCCAGCTGCTTACTGAGGTGTCCAGTTCTGCCCTAT
GGAGATCCAATTCAGTTACGAATCTCAAGACCATCACTTTCTCTCAGATGGTGAGGTTCAGATC
AAGATCGGAGAGCCAGCCACAGAGGAGGAAATGACAGGAGAGATTGAAACACTGACTGAAGAGT
CTGGCAGCTCCCAGGCTGATGATGCCCACAATTCCAAAGGCAGCGGATTCTTTGAGTTTGGGGA
TGAATTGAATGATCAGATGCTCTTTGGAAGAAGACAGTATAACTGCGACGAATGTGGCCAAAGC
TTTGCTTGGAATACAGGTCTTATTAGGCACCAAAGAACTCACTGGAAACCTTACGAATGTGAAG
AATGTGGAAAGGCCTTTCGGATGAGCTCAGCCCTGGTTCTACATCAGAGAATTCATACTGGAGA
AAAGCCCTATCCTTGTAGTTGGTGTATTAAAAGTTTTAGTCGGAGCTCAGACCTTATTAAACAT
CAAAGAGTCCACACGGGTGAAAAACCTTACAAGTGTGATGAGTGTGGGAAGGCCTTCAGTCAGA
GCTCAGACCTTATGACACACCAGAGAATCCACACAGGAGAAAAACCCTACCAATGTAGTCATTG
TAGTAAAAGCTTTAGCCAGCACTCAGGCATGGTTAAACATCTGAGAATCCACACTGGAGAGAAA
CCTTATATGTGTAACCATTGTTACAAACATTTCAGTCAGAGCTCTGATCTCATAAAACATGAGA
GAATCCACACTGGGGAGAAGCCGTATAAGTGTGATGTGTGTGGGAAGGCCTTCAGTCAGAGCTC
AGATCGTATTCTCCATCAAAGAATCCACACTGGGGAGAAGCCATATCCATGTGCTCAGTGTAAC
AAGAGTTTTAGTCAGAATTCAGACCTTATTAAACACAGAAGGATTCACACTGGCGAGAAGCCAT
ATCAGTGCAGTGAATGTGGGAAGGCTTTTAACCAGAGCTCAGTCCTTATTCTGCATCAAAGAAT
TCATACTGGAGAGAAACCCTATCCATGTAATCAGTGTGCCAAAAGCTTCAGTAGGCTTTCAGAT
CTTATTAACCATCAACGAATTCACACCGGAGAGAAGCCTTACCCATGTAGTCAGTGCAGTAAAA
TGTTTAGTAGAAGGTCCGATCTTGTTAAACATTATCGAATCCACACTGGGGAGAAGCCCTATGA
GTGTGATAAATGTGGCAAGACTTTCAGTCAGAGTTCCAACCTTATTCTCCACCAGAGAATCCAC
ACTGGAGAAAAACCATACCCTTGCAACAGTTGTTCTAAAAGTTTTAGTCGAGGTTCAGATCTCA
TAAAGCATCAAAGAGTACACACTGGAGAAAAACCATATACTTGTAATCTGTGCAATAAGAGCTT
TAGTCAAAGTTCAGACCTCACTAAACATCAGAGAGTGCATTCTGGCGAGAAGCCCTACCACTGT
AGTAGTTGTAACAAAGCCTTTCGTCAGAGCTCTGACCTTATTCTCCACTACAGAGTTCACACAG
GAGAAAGACCATATGCGTGTACACAGTGCACCAGAAGTTTCAGTCAAAAGTCAGACCTTATTAA
ACACCAGAGAGTTCACACTGGAGAGAAGCCATATAAATGTGTGTGTGGGAAGGCCTTCAGTCAG
TGCTCAGCCTTTACCCTTCATCAGAGAATCCACACTGGAGAGAGGCCATATCCATGTGCTCAGT
GTGGCAAAAGCTTCACCCAGCGCTCTGATCTAGTTAACCATCAAAGAGTCCACACTGGTCAAAA
GCCACAAATGTAATACCTGTGTGAAACCTTCAGCGCCATGACCAGTCTTACCGGATAGCAGAGG
GTGTGCCCAGAGCCATTAGCAGCTTTTCTGAAATGGGAAAAAGTGAGAAAGTCCTGCTTGACAG
GCAGATTTCCCGGCCTGCTTATGGAAAAATAAGAGAAGGTGTGCTTGAGGCTCAAGGTGAGGGG
CCGAAGATTTGCCCTTGGTGGAAGAAACAGGGAGGTTATTTGATGGGAACAGATGTCTTACTGT
ATATTGCAGCAAATTGCTTCTGTTGGCTTATGGCTTTGCTTCCACAATACTGTAGCATAAGAAG
GCTGTGAGAACTACACTCACTGCTGGCGTGGCATAGATCTGCGGCCCTCCCGTACCTGTCTTGC
ATCTTTTTTTTTTTTTTTTTTATCTTTCCTATAATCAGCCTCACTCTCCCCACAGAGACTGTTC
AACTTTGTGCCATCCAGACTAATACCAGGATCCACATAAAAGAACTTCTGATCTCATGTTCAGG
GTAGCTGATATTTTAACAAATCTTATCTTGGTGATTTTAAGTAAATCCATTCTAGGCAGGCACA
TGTCTTTAATTTTAGCACTTGGGAGGCAGAGGCAAGTGGATCTCTAACTTCAAGGCTCTCCAGG
GCTACATAGAAAAGTCTGAGGGGTTGGGGATTTAGCTCAGCGGTAGAGCGCTTGCCTATCGAGC
GCAAGGCCCTGGGTTCGGTCCCCAGGTCTGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001013159	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89850	(Get FASTA)	NCBI Sequence Viewer
	EDL76125	(Get FASTA)	NCBI Sequence Viewer
	EDL76126	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000067944
	ENSRNOP00000067944.2

RefSeq Acc Id:

NP_001013159 ⟸ NM_001013141

- UniProtKB:

Q5FVP4 (UniProtKB/TrEMBL), A0A096MJ05 (UniProtKB/TrEMBL), A0A9K3Y763 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEIQFSYESQDHHFLSDGEVQIKIGEPATEEEMTGEIETLTEESGSSQADDAHNSKGSGFFEFG
DELNDQMLFGRRQYNCDECGQSFAWNTGLIRHQRTHWKPYECEECGKAFRMSSALVLHQRIHTG
EKPYPCSWCIKSFSRSSDLIKHQRVHTGEKPYKCDECGKAFSQSSDLMTHQRIHTGEKPYQCSH
CSKSFSQHSGMVKHLRIHTGEKPYMCNHCYKHFSQSSDLIKHERIHTGEKPYKCDVCGKAFSQS
SDRILHQRIHTGEKPYPCAQCNKSFSQNSDLIKHRRIHTGEKPYQCSECGKAFNQSSVLILHQR
IHTGEKPYPCNQCAKSFSRLSDLINHQRIHTGEKPYPCSQCSKMFSRRSDLVKHYRIHTGEKPY
ECDKCGKTFSQSSNLILHQRIHTGEKPYPCNSCSKSFSRGSDLIKHQRVHTGEKPYTCNLCNKS
FSQSSDLTKHQRVHSGEKPYHCSSCNKAFRQSSDLILHYRVHTGERPYACTQCTRSFSQKSDLI
KHQRVHTGEKPYKCVCGKAFSQCSAFTLHQRIHTGERPYPCAQCGKSFTQRSDLVNHQRVHTGQ
KPQM

hide sequence

Ensembl Acc Id:

ENSRNOP00000071577 ⟸ ENSRNOT00000088353

Ensembl Acc Id:

ENSRNOP00000067944 ⟸ ENSRNOT00000076137

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K0T7-F1-model_v2	AlphaFold	A0A0G2K0T7	1-580	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700664

Promoter ID:

EPDNEW_R11184

Type:

initiation region

Name:

Zfp35_1

Description:

zinc finger protein 35

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	15,883,129 - 15,883,189	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1312031	AgrOrtholog
BioCyc Gene	G2FUF-8166	BioCyc
Ensembl Genes	ENSRNOG00000049137	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000076137	ENTREZGENE
	ENSRNOT00000076137.4	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7375328	IMAGE-MGC_LOAD
InterPro	C2H2-ZF_Transcription_Reg	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:307547	UniProtKB/TrEMBL
MGC_CLONE	MGC:108880	IMAGE-MGC_LOAD
NCBI Gene	307547	ENTREZGENE
PANTHER	ODD-SKIPPED - RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 208-LIKE	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp35	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000049137	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A096MJ05	ENTREZGENE
	A0A9K3Y763	ENTREZGENE, UniProtKB/TrEMBL
	Q5FVP4	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A096MJ05	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Zfp35	zinc finger protein 35	Zfp239	zinc finger protein 239	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Zfp239	zinc finger protein 239	Zfp239_predicted	zinc finger protein 239 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfp239_predicted	zinc finger protein 239 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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