Zbtb48 (zinc finger and BTB domain containing 48) - Rat Genome Database

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Gene: Zbtb48 (zinc finger and BTB domain containing 48) Rattus norvegicus
Analyze
Symbol: Zbtb48
Name: zinc finger and BTB domain containing 48
RGD ID: 1311581
Description: Predicted to enable DNA-binding transcription factor activity; identical protein binding activity; and sequence-specific DNA binding activity. Predicted to be involved in positive regulation of DNA-templated transcription; regulation of transcription by RNA polymerase II; and telomere maintenance via telomere lengthening. Predicted to be located in chromosome, telomeric region. Orthologous to human ZBTB48 (zinc finger and BTB domain containing 48); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GLI-Kruppel family member HKR3; Hkr3; LOC362668; MGC108933; zinc finger and BTB domain-containing protein 48
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85167,807,965 - 167,816,332 (-)NCBIGRCr8
mRatBN7.25162,525,234 - 162,533,604 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,525,235 - 162,533,585 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5165,228,416 - 165,236,733 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05167,049,273 - 167,057,600 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05167,011,473 - 167,019,800 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05169,191,771 - 169,200,140 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,191,753 - 169,200,109 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05172,750,034 - 172,758,396 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,247,667 - 169,255,998 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15169,257,855 - 169,266,187 (-)NCBI
Celera5160,758,007 - 160,766,255 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:25416956   PMID:28082411   PMID:28500257  


Genomics

Comparative Map Data
Zbtb48
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85167,807,965 - 167,816,332 (-)NCBIGRCr8
mRatBN7.25162,525,234 - 162,533,604 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,525,235 - 162,533,585 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5165,228,416 - 165,236,733 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05167,049,273 - 167,057,600 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05167,011,473 - 167,019,800 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05169,191,771 - 169,200,140 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,191,753 - 169,200,109 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05172,750,034 - 172,758,396 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,247,667 - 169,255,998 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15169,257,855 - 169,266,187 (-)NCBI
Celera5160,758,007 - 160,766,255 (-)NCBICelera
Cytogenetic Map5q36NCBI
ZBTB48
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,579,994 - 6,589,280 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,579,994 - 6,589,280 (+)EnsemblGRCh38hg38GRCh38
GRCh3716,640,054 - 6,649,340 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,562,698 - 6,571,926 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416,574,376 - 6,583,605NCBI
Celera15,753,931 - 5,763,198 (+)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,787,988 - 5,797,267 (+)NCBIHuRef
CHM1_116,628,790 - 6,638,066 (+)NCBICHM1_1
T2T-CHM13v2.016,105,658 - 6,114,944 (+)NCBIT2T-CHM13v2.0
Zbtb48
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,104,230 - 152,112,132 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,104,231 - 152,112,128 (-)EnsemblGRCm39 Ensembl
GRCm384152,019,773 - 152,027,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4152,019,774 - 152,027,671 (-)EnsemblGRCm38mm10GRCm38
MGSCv374151,393,885 - 151,401,780 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364150,863,574 - 150,871,458 (-)NCBIMGSCv36mm8
Celera4154,305,920 - 154,314,047 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map482.83NCBI
Zbtb48
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554866,048,234 - 6,055,690 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554866,049,242 - 6,056,253 (-)NCBIChiLan1.0ChiLan1.0
ZBTB48
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,638,846 - 221,648,166 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,280,945 - 220,290,260 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v015,341,282 - 5,350,590 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,594,372 - 6,603,367 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,594,372 - 6,603,367 (+)Ensemblpanpan1.1panPan2
ZBTB48
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,406,145 - 60,413,532 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,406,700 - 60,413,492 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,415,683 - 60,423,077 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,621,820 - 60,629,216 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,621,839 - 60,629,210 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,620,895 - 60,628,287 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,487,572 - 60,494,968 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,889,690 - 60,897,084 (+)NCBIUU_Cfam_GSD_1.0
Zbtb48
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,848,826 - 30,857,102 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,334,046 - 1,344,153 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,334,084 - 1,342,341 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB48
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,410,574 - 67,418,293 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,410,558 - 67,418,295 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,363,772 - 62,425,369 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB48
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,157,938 - 125,167,037 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20125,157,860 - 125,167,014 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605429,202,992 - 29,212,114 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb48
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248184,942,849 - 4,951,024 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248184,943,468 - 4,951,223 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zbtb48
24 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:85
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000012745
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat

Markers in Region
RH134774  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25162,525,342 - 162,525,537 (+)MAPPERmRatBN7.2
Rnor_6.05169,191,880 - 169,192,074NCBIRnor6.0
Rnor_5.05172,750,143 - 172,750,337UniSTSRnor5.0
RGSC_v3.45169,247,776 - 169,247,970UniSTSRGSC3.4
Celera5160,758,116 - 160,758,310UniSTS
RH 3.4 Map51138.2UniSTS
Cytogenetic Map5q36UniSTS
RH101847  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25162,525,234 - 162,525,451 (+)MAPPERmRatBN7.2
Rnor_6.05169,191,772 - 169,191,988NCBIRnor6.0
Rnor_5.05172,750,035 - 172,750,251UniSTSRnor5.0
RGSC_v3.45169,247,668 - 169,247,884UniSTSRGSC3.4
Celera5160,758,008 - 160,758,224UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10 10 4 8 4 52 20 31 3
Low 3 33 47 37 11 37 8 11 22 15 10 8 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC091214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ200912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO567542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000012745   ⟹   ENSRNOP00000012745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5162,525,235 - 162,533,558 (-)Ensembl
Rnor_6.0 Ensembl5169,191,753 - 169,200,109 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105422   ⟹   ENSRNOP00000076898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5162,525,235 - 162,533,585 (-)Ensembl
RefSeq Acc Id: NM_001013216   ⟹   NP_001013234
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,807,965 - 167,816,286 (-)NCBI
mRatBN7.25162,525,234 - 162,533,558 (-)NCBI
Rnor_6.05169,191,771 - 169,200,109 (-)NCBI
Rnor_5.05172,750,034 - 172,758,396 (-)NCBI
RGSC_v3.45169,247,667 - 169,255,998 (-)RGD
Celera5160,758,007 - 160,766,255 (-)RGD
Sequence:
RefSeq Acc Id: XM_006239469   ⟹   XP_006239531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,807,965 - 167,816,309 (-)NCBI
mRatBN7.25162,525,276 - 162,533,512 (-)NCBI
Rnor_6.05169,191,771 - 169,200,140 (-)NCBI
Rnor_5.05172,750,034 - 172,758,396 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110449   ⟹   XP_038966377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,807,965 - 167,816,332 (-)NCBI
mRatBN7.25162,525,234 - 162,533,604 (-)NCBI
RefSeq Acc Id: XM_039110450   ⟹   XP_038966378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,807,965 - 167,816,312 (-)NCBI
mRatBN7.25162,525,234 - 162,533,585 (-)NCBI
RefSeq Acc Id: XM_039110451   ⟹   XP_038966379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,807,965 - 167,816,305 (-)NCBI
mRatBN7.25162,525,234 - 162,533,436 (-)NCBI
RefSeq Acc Id: XM_039110452   ⟹   XP_038966380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,807,965 - 167,811,065 (-)NCBI
mRatBN7.25162,525,234 - 162,528,337 (-)NCBI
RefSeq Acc Id: XM_039110453   ⟹   XP_038966381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,810,429 - 167,816,332 (-)NCBI
mRatBN7.25162,527,701 - 162,533,604 (-)NCBI
RefSeq Acc Id: XM_063288093   ⟹   XP_063144163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,807,965 - 167,816,299 (-)NCBI
RefSeq Acc Id: XR_005504504
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,809,875 - 167,816,332 (-)NCBI
mRatBN7.25162,526,069 - 162,533,604 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001013234   ⟸   NM_001013216
- UniProtKB: G3V777 (UniProtKB/TrEMBL),   A6IUG1 (UniProtKB/TrEMBL),   A0A8I5YBZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239531   ⟸   XM_006239469
- Peptide Label: isoform X2
- UniProtKB: G3V777 (UniProtKB/TrEMBL),   A6IUG1 (UniProtKB/TrEMBL),   A0A8I5YBZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000012745   ⟸   ENSRNOT00000012745
RefSeq Acc Id: XP_038966377   ⟸   XM_039110449
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966378   ⟸   XM_039110450
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966379   ⟸   XM_039110451
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966380   ⟸   XM_039110452
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038966381   ⟸   XM_039110453
- Peptide Label: isoform X4
- UniProtKB: Q5BK41 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000076898   ⟸   ENSRNOT00000105422
RefSeq Acc Id: XP_063144163   ⟸   XM_063288093
- Peptide Label: isoform X2
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V777-F1-model_v2 AlphaFold G3V777 1-683 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694296
Promoter ID:EPDNEW_R4819
Type:initiation region
Name:Zbtb48_1
Description:zinc finger and BTB domain containing 48
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05169,200,077 - 169,200,137EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311581 AgrOrtholog
BioCyc Gene G2FUF-39027 BioCyc
Ensembl Genes ENSRNOG00000009595 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012745 ENTREZGENE
  ENSRNOT00000012745.6 UniProtKB/TrEMBL
  ENSRNOT00000105422.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7383542 IMAGE-MGC_LOAD
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:362668 UniProtKB/TrEMBL
MGC_CLONE MGC:108933 IMAGE-MGC_LOAD
NCBI Gene 362668 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  AGAP004733-PA UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 42 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zbtb48 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009595 RatGTEx
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5YBZ1 ENTREZGENE, UniProtKB/TrEMBL
  A6IUG1 ENTREZGENE, UniProtKB/TrEMBL
  G3V777 ENTREZGENE, UniProtKB/TrEMBL
  Q5BK41 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-20 Zbtb48  zinc finger and BTB domain containing 48  Hkr3  GLI-Kruppel family member HKR3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Hkr3  GLI-Kruppel family member HKR3  Hkr3_predicted  GLI-Kruppel family member HKR3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Hkr3_predicted  GLI-Kruppel family member HKR3 (predicted)      Symbol and Name status set to approved 70820 APPROVED