Shtn1 (shootin 1) - Rat Genome Database

Name: Shtn1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Shtn1 (shootin 1) Rattus norvegicus

Analyze

Symbol:

Shtn1

Name:

shootin 1

RGD ID:

1311558

Description:

Enables actin filament binding activity and cell adhesion molecule binding activity. Involved in several processes, including actin filament bundle retrograde transport; netrin-activated signaling pathway; and small GTPase-mediated signal transduction. Acts upstream of or within axonogenesis. Located in axonal growth cone; filopodium; and lamellipodium. Orthologous to human SHTN1 (shootin 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC292139; RGD1311558; shootin-1; Shootin1; similar to 4930506M07Rik protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SHTN1 (shootin 1)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Shtn1 (shootin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Shtn1 (shootin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SHTN1 (shootin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SHTN1 (shootin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Shtn1 (shootin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SHTN1 (shootin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SHTN1 (shootin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Shtn1 (shootin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HMMR (hyaluronan mediated motility receptor)	HGNC	PhylomeDB
Alliance orthologs ³
Mus musculus (house mouse):	Shtn1 (shootin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SHTN1 (shootin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	shtn1 (shootin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	268,108,095 - 268,211,947 (-)	NCBI		GRCr8
mRatBN7.2	1	258,121,966 - 258,225,861 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	258,121,968 - 258,228,265 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	266,328,763 - 266,432,664 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	273,034,770 - 273,138,674 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	265,676,574 - 265,780,223 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	280,129,228 - 280,233,873 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	280,130,504 - 280,233,929 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	287,492,520 - 287,596,742 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	265,492,017 - 265,597,362 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	265,703,061 - 265,791,387 (-)	NCBI
Celera	1	253,780,118 - 253,883,412 (-)	NCBI		Celera
Cytogenetic Map	1	q55	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-chloropropane-1,2-diol (EXP)

acetamide (EXP)

acrylamide (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

caffeine (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

enzyme inhibitor (ISO)

FR900359 (ISO)

ivermectin (ISO)

lead(0) (ISO)

malathion (ISO)

maneb (ISO)

mercury dibromide (ISO)

methoxychlor (EXP)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vincaleukoblastine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament bundle retrograde transport (IMP)

axonogenesis (IDA,IMP)

Cdc42 protein signal transduction (IDA)

cytoplasmic actin-based contraction involved in cell motility (IDA)

endoplasmic reticulum polarization (IEA,ISO,ISS)

netrin-activated signaling pathway (IDA)

neuron projection morphogenesis (IBA,IEA,ISO)

positive regulation of axon extension (IDA)

positive regulation of neuron migration (IBA,IEA,ISO,ISS)

Ras protein signal transduction (IDA)

regulation of establishment of cell polarity (IEA,ISO,ISS)

regulation of neuron migration (ISO)

substrate-dependent cell migration, cell extension (IDA)

Cellular Component

axon (ISO,ISS)

axonal growth cone (IBA,IDA,IEA,ISO)

cell leading edge (IBA,IEA,ISO,ISS)

cytoplasm (IBA,IEA,ISO)

cytoskeleton (IEA)

cytosol (TAS)

filopodium (IDA,IEA)

growth cone (ISO,ISS)

lamellipodium (IDA)

microtubule (IEA)

microtubule associated complex (IEA,ISO,ISS)

microtubule cytoskeleton (ISO,ISS)

perikaryon (IEA,ISO,ISS)

perinuclear region of cytoplasm (IEA,ISO,ISS)

Molecular Function

actin filament binding (IDA)

cell adhesion molecule binding (IPI)

identical protein binding (ISO)

kinesin binding (IEA,ISO)

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Singar1, a novel RUN domain-containing protein, suppresses formation of surplus axons for neuronal polarity.	Mori T, etal., J Biol Chem. 2007 Jul 6;282(27):19884-93. Epub 2007 Apr 17.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Shootin1 interacts with actin retrograde flow and L1-CAM to promote axon outgrowth.	Shimada T, etal., J Cell Biol. 2008 Jun 2;181(5):817-29. doi: 10.1083/jcb.200712138.
7.	Conversion of a signal into forces for axon outgrowth through Pak1-mediated shootin1 phosphorylation.	Toriyama M, etal., Curr Biol. 2013 Mar 18;23(6):529-34. doi: 10.1016/j.cub.2013.02.017. Epub 2013 Feb 28.
8.	Shootin1: A protein involved in the organization of an asymmetric signal for neuronal polarization.	Toriyama M, etal., J Cell Biol. 2006 Oct 9;175(1):147-57.

Additional References at PubMed

PMID:12477932	PMID:23349951	PMID:23864681	PMID:25468996	PMID:26261183	PMID:27177867

Genomics

Comparative Map Data

Shtn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	268,108,095 - 268,211,947 (-)	NCBI		GRCr8
mRatBN7.2	1	258,121,966 - 258,225,861 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	258,121,968 - 258,228,265 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	266,328,763 - 266,432,664 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	273,034,770 - 273,138,674 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	265,676,574 - 265,780,223 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	280,129,228 - 280,233,873 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	280,130,504 - 280,233,929 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	287,492,520 - 287,596,742 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	265,492,017 - 265,597,362 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	265,703,061 - 265,791,387 (-)	NCBI
Celera	1	253,780,118 - 253,883,412 (-)	NCBI		Celera
Cytogenetic Map	1	q55	NCBI

SHTN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	116,881,477 - 117,126,586 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	116,881,477 - 117,126,586 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	118,640,988 - 118,886,097 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	118,634,298 - 118,754,866 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	118,634,297 - 118,754,866	NCBI
Celera	10	112,373,761 - 112,494,434 (-)	NCBI		Celera
Cytogenetic Map	10	q25.3	NCBI
HuRef	10	112,271,060 - 112,514,144 (-)	NCBI		HuRef
CHM1_1	10	118,926,007 - 119,170,550 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	117,775,790 - 118,020,853 (-)	NCBI		T2T-CHM13v2.0

Shtn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	58,961,790 - 59,064,536 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	58,961,788 - 59,064,532 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	58,973,358 - 59,076,124 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	58,973,356 - 59,076,100 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	59,047,848 - 59,150,559 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	59,026,608 - 59,129,319 (-)	NCBI		MGSCv36	mm8
Celera	19	61,169,551 - 61,273,002 (-)	NCBI		Celera
Cytogenetic Map	19	D2- D3	NCBI
cM Map	19	54.56	NCBI

Shtn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	21,653,415 - 21,734,426 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	21,653,415 - 21,734,160 (-)	NCBI	ChiLan1.0	ChiLan1.0

SHTN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	128,754,580 - 128,874,988 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	128,759,919 - 128,880,890 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	113,466,218 - 113,587,490 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	116,896,155 - 117,016,223 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	116,896,155 - 117,016,223 (-)	Ensembl	panpan1.1		panPan2

SHTN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	27,422,086 - 27,517,190 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	27,421,579 - 27,517,935 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	27,573,585 - 27,668,504 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	27,959,994 - 28,054,999 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	27,957,550 - 28,055,005 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	27,514,665 - 27,609,578 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	27,534,711 - 27,629,636 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	27,722,736 - 27,817,796 (-)	NCBI		UU_Cfam_GSD_1.0

Shtn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	18,670,096 - 18,776,128 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	6,786,015 - 6,867,236 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	6,786,037 - 6,867,221 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SHTN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	127,064,397 - 127,175,227 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	127,065,507 - 127,175,222 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	138,374,673 - 138,474,865 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SHTN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	109,696,107 - 109,817,537 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	109,697,657 - 109,816,774 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	70,951,162 - 71,071,731 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Shtn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624737	29,621,459 - 29,719,286 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Shtn1
629 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	17
Count of miRNA genes:	16
Interacting mature miRNAs:	16
Transcripts:	ENSRNOT00000064463
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	199050459	259647894	Rat
1358890	Bp259	Blood pressure QTL 259	3.06		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	210702053	260522016	Rat
734768	Niddm59	Non-insulin dependent diabetes mellitus QTL 59			body mass (VT:0001259)	body weight (CMO:0000012)	1	213843987	258843987	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	214647894	259647894	Rat
1549910	Bw54	Body weight QTL 54		0.05	body mass (VT:0001259)	body weight (CMO:0000012)	1	214647894	259647894	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	216255568	260522016	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	216255568	260522016	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	221264111	259647894	Rat
10053715	Scort24	Serum corticosterone level QTL 24	2.13	0.0088	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	221414816	260522016	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	222363780	260522016	Rat
1600392	Bw123	Body weight QTL 123		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	223201027	260522016	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	224054293	260122809	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	224054293	260122809	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	224569538	260122809	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	225126575	260522016	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	228581588	259647894	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	232156370	259647894	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233190394	258625266	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	233948574	260522016	Rat
631690	Scl5	Serum cholesterol level QTL 5	2.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	236125214	260522016	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	0.00000487	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	237147813	260522016	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	238699859	259647894	Rat

Markers in Region

D1Got355

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	258,216,017 - 258,216,242 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	280,224,030 - 280,224,254	NCBI	Rnor6.0
Rnor_5.0	1	287,586,813 - 287,587,037	UniSTS	Rnor5.0
RGSC_v3.4	1	265,587,570 - 265,587,794	UniSTS	RGSC3.4
Celera	1	253,873,565 - 253,873,789	UniSTS
Cytogenetic Map	1	q55	UniSTS

RH130905

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	258,122,046 - 258,122,242 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	280,129,309 - 280,129,504	NCBI	Rnor6.0
Rnor_5.0	1	287,492,747 - 287,492,942	UniSTS	Rnor5.0
RGSC_v3.4	1	265,492,098 - 265,492,293	UniSTS	RGSC3.4
Celera	1	253,780,199 - 253,780,394	UniSTS
RH 3.4 Map	1	1706.7	UniSTS
Cytogenetic Map	1	q55	UniSTS

BF399364

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	258,176,516 - 258,176,689 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	280,183,758 - 280,183,930	NCBI	Rnor6.0
Rnor_5.0	1	287,546,541 - 287,546,713	UniSTS	Rnor5.0
RGSC_v3.4	1	265,547,253 - 265,547,425	UniSTS	RGSC3.4
Celera	1	253,834,262 - 253,834,434	UniSTS
RH 3.4 Map	1	1695.8	UniSTS
Cytogenetic Map	1	q55	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2		10	1	18	1			72	31	29	11
Low	1	43	47	40	1	40	8	8	2	4	12		8
Below cutoff								3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001079705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001303537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC085922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB751427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO392889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF055485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF055488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000064463 ⟹ ENSRNOP00000061843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	258,121,968 - 258,199,729 (-)	Ensembl
Rnor_6.0 Ensembl	1	280,130,703 - 280,233,755 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000085778 ⟹ ENSRNOP00000074944

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	258,121,968 - 258,225,861 (-)	Ensembl
Rnor_6.0 Ensembl	1	280,130,504 - 280,233,929 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104427 ⟹ ENSRNOP00000091450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	258,121,968 - 258,228,265 (-)	Ensembl

RefSeq Acc Id:

NM_001079705 ⟹ NP_001073173

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	268,108,095 - 268,211,947 (-)	NCBI
mRatBN7.2	1	258,121,966 - 258,225,861 (-)	NCBI
Rnor_6.0	1	280,129,228 - 280,233,873 (-)	NCBI
Rnor_5.0	1	287,492,520 - 287,596,742 (-)	NCBI
RGSC_v3.4	1	265,492,017 - 265,597,362 (-)	RGD
Celera	1	253,780,118 - 253,883,412 (-)	NCBI

Sequence:

show sequence

AACTTCCGGGTAGTGCAGCCGCACGCCGCGCCACCGGCATCTTGCTTTCTGCTCCCCCTCCCCC
GTGTCCCCCTCGCCTCTCCCTCCTTGCCTTTTATCCCCAGCCCCACCCGCCAAAATGAACAGCT
CGGACGAGGAGAAGCAGCTGCAGCTCATCACCAGCTTGAAGGAACAAGCCATAGGCGAATATGA
AGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGACGTGTGACAAGATTAGGCAAGAACGAGAT
GAAGCTGTTAAGAAACTGGAAGAGTTTCAGAAAATTTCTCATATGGTTATAGAGGAAGTAAATT
TCATGCAGAACCACCTTGAGATAGAGAAGACATGCCGAGAGAGTGCTGAGGCCTTGGCGACAAA
GCTAAATAAAGAAAATAAAACCCTGAAAAGAATCAGCATGCTATACATGGCCAAACTGGGGCCA
GACGTAATAACAGAGGAGATAAACATTGATGATGACGACCCAGGCACCGACACAGACGCCGCGG
CAGAGACCTGTGTGTCCGTCCAGTGTCAGAAGCAAATCAAAGAACTTCGAGATCAAATTGTGTC
TGTTCAGGAAGAAAAGAAAGTGTTAGCCATTGAGCTGGAAAGCCTCAAGAGCAAACTCGGGGAG
GTGATGGAGGAGGTAAATAAAGTTAAGCAAGAAAAAGCTGTCTTGAATTCAGAAGTTCTTGAGC
AGAGGAAAGTCTTAGAAAAATGCAACAGAGTGTCCGTGTTAGCCGTCGAGGAGTATGAGGAGCT
ACAGGTGAACCTGGAGCTGGAGAAGGACCTTCGCAAGAAGGCAGAGTCTTTTGCACAAGAGATG
TTCATTGAACAAAACAAGCTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACC
AGCAGCTTCTGAAAGCTTTAGATGAAAATGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGAT
CCAGCATCAGCAAAAGGTCAAAGAGTTAGAGGAACGGCTAGAGAATGAAGCGCTTCACAAAGAG
ATCCACAACCTCAGACAACAGCTGGAGCTTCTGGAGGATGACAAGAGAGAGCTGGAGCAGAAAT
ACCAGAGCTCGGAGGAAAAGGCCCGGAACCTGAAGCATTCAGTGGACGAACTCCAGAAGCGAGT
GAATCAGTCGGAGAATTCGGTGCCTCCCCCGCCTCCTCCTCCTCCACCTCTTCCACCTCCGCCT
CCCAATCCAATCCGGTCCCTCATGTCAATGATCCGGAAGCGATCCCACCCCAGTGGCGGTAGCA
CTAAGAAGGAAAAGGCAACTCAGCCAGAGACAGCTGAGGAAGTCACAGACCTGAAGAGGCAAGC
AGTGGAAGAGATGATGGACAGAATTAAAAAGGGAGTTCATCTTAGACCAGTTAACCAGACAGCC
AGACCCAAGGCAAAGCCAGACTCTCTAAAGGGCTCAGAAAGTGCAGTGGATGAACTGAAGGGAA
TCCTGGGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAG
TGAAACTGAGTTAGAGAGGATTTTACGCCGCAGAAAGCTGACAGCAGAAGCAGATAGCAGTAGT
CCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTG
TAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAATCCGTGTCCCCTAAC
ACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATTCCAAGGTTACCTTTCAG
CCTCCCAGTAAAGGTGGATACAGGAGAAAATGTGTGGGCAGTGAAAACCAGTCTGAGCCGGTTG
TAGTTTTAGATCCTGTTTCTACACATGAACCCCAAACCAAAGACCAGGCTGCTGAGAAAGACCC
AACCCAATGCAAGGAGGAGGAGAGAGGCGAAACACAACCAGAATTCAAAGAAGACAGCAGTGGT
GGAAAAACGGGAGAGACGGACAGTTCTAACTGCTGATCTGAAACCAGAGGCTGGCGTGTTTGCG
GGGCCTTCTCAGTGAGCACGTGGTTCACCTGTGTGTACTGTCAAGAACTGTTGGACATTCCTTT
GTTCCCCACACTCCTTTGCTGGTATCACTTTGTAAGTAGCAATTATGAACATAAGTAAGCTGTT
TAGCAAAACGCATCTTCTGGGTAGTTTTTAATCTTTACGGGGTAAGGGTTCTTTCTAGTTTCTA
TATGAAGTATGACTTTCTTGAGACTGTGGCAGAACTCAGATGTTGGTGTCTTTACAGGGAACGT
GCTTACCACTCATCAAATTATTCATGGGAAAATTAAAGGTGGTTGCTGGTAACTGGATAAACAG
AGACCACCAAACTTAACAATTATCTTAAGGGGCACCCTCTAATCCAAGCCCAGCACATGGGGAG
ACTAAGGCAAGAGGATCACTTGAGCCTGAGCTTGAGTTCGGGTCACATAGCAAGACTCCATATA
AAGAAAAGGCCTGGAAGAGTCTCTTGTTTGAGTCTGGTCTTCTGATGGGAAACTGCAGCAGTCA
GGACATTAGTGGGTCCTTTAGAGTCTCCATTTTGTAGGGTACACGAGACCGGCCAGCTCTGAGC
TCAGGAGGTGGCATCATGGTCTCTTAGGTCTGAGTTGAGCACAGTTGACTATTGTGTGGAAAAC
GTGACCCTGTGTCCCAGGCTTAGAGAGTCCTTCAGGGGTGATATCCTGGCAGCCTCAACAGAGA
CTTGGACAGATGCTCAAACCTTGAATTTAACAGGGATGTCTCAGTAAACTACCCATTCTGTTCC
ATGAGTTAACTGTGTTTTCCCACACATTCACAGGGCACAAGTACCATATGTAACGCCCGTTCTT
ATGCACAGGGAAGATAAGTAACAAGCACACATTGTTTTTCTTCCTTCACTGAGGATCTATACTA
CATGGGTCTTTTCTTGTTTTGTTTTTTTGTTTGTTTGTTTTTAGGGGAAATTAAGTGGTAGTTT
CTAAAAATACAATGTTTCAGACTACCACGGTGACTAAATAGAAATGTAATCAGGGATTTAAGAA
AAAAAACTTATGCAGGTTTTCAAAGTTGATTGTTTCAAAATTGGTGTTTATTTAAAATAAGTGG
TAATGTACTTGAGTGCACTTTTTATGATAATGATTCAGTAATGGTAATTTTACTATTAAGGAAA
TCGAAAGGCTTAGTTTTGTTAGCATGACTCGGCATGTAGCTGTCAGGTGCTCCCCACCTGAGGG
CAAAAGAAAATGATAGTAACAATTGCAGTAGTTGTATCCTATTGTATTTTTGCACGTGTGCTAC
TAGTGGGCCTGGGGAGGTGGGAAGGCAGGTGAGGATACTTCCTCGGCTTGGGGACAATTCTCTT
TCTGTAGGTTCACTGGGCTTGACTATTTCCCCTGTCTGTCAGTGCTGATTTTATATCCCTGTCA
GTTTACTCATGGGGAATTAAAACATGATTTTTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001303537 ⟹ NP_001290466

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	268,108,095 - 268,211,947 (-)	NCBI
mRatBN7.2	1	258,121,966 - 258,225,861 (-)	NCBI
Rnor_6.0	1	280,129,228 - 280,233,873 (-)	NCBI
Celera	1	253,780,118 - 253,883,412 (-)	NCBI

Sequence:

show sequence

AACTTCCGGGTAGTGCAGCCGCACGCCGCGCCACCGGCATCTTGCTTTCTGCTCCCCCTCCCCC
GTGTCCCCCTCGCCTCTCCCTCCTTGCCTTTTATCCCCAGCCCCACCCGCCAAAATGAACAGCT
CGGACGAGGAGAAGCAGCTGCAGCTCATCACCAGCTTGAAGGAACAAGCCATAGGCGAATATGA
AGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGACGTGTGACAAGATTAGGCAAGAACGAGAT
GAAGCTGTTAAGAAACTGGAAGAGTTTCAGAAAATTTCTCATATGGTTATAGAGGAAGTAAATT
TCATGCAGAACCACCTTGAGATAGAGAAGACATGCCGAGAGAGTGCTGAGGCCTTGGCGACAAA
GCTAAATAAAGAAAATAAAACCCTGAAAAGAATCAGCATGCTATACATGGCCAAACTGGGGCCA
GACGTAATAACAGAGGAGATAAACATTGATGATGACGACCCAGGCACCGACACAGACGCCGCGG
CAGAGACCTGTGTGTCCGTCCAGTGTCAGAAGCAAATCAAAGAACTTCGAGATCAAATTGTGTC
TGTTCAGGAAGAAAAGAAAGTGTTAGCCATTGAGCTGGAAAGCCTCAAGAGCAAACTCGGGGAG
GTGATGGAGGAGGTAAATAAAGTTAAGCAAGAAAAAGCTGTCTTGAATTCAGAAGTTCTTGAGC
AGAGGAAAGTCTTAGAAAAATGCAACAGAGTGTCCGTGTTAGCCGTCGAGGAGTATGAGGAGCT
ACAGGTGAACCTGGAGCTGGAGAAGGACCTTCGCAAGAAGGCAGAGTCTTTTGCACAAGAGATG
TTCATTGAACAAAACAAGCTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACC
AGCAGCTTCTGAAAGCTTTAGATGAAAATGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGAT
CCAGCATCAGCAAAAGGTCAAAGAGTTAGAGGAACGGCTAGAGAATGAAGCGCTTCACAAAGAG
ATCCACAACCTCAGACAACAGCTGGAGCTTCTGGAGGATGACAAGAGAGAGCTGGAGCAGAAAT
ACCAGAGCTCGGAGGAAAAGGCCCGGAACCTGAAGCATTCAGTGGACGAACTCCAGAAGCGAGT
GAATCAGTCGGAGAATTCGGTGCCTCCCCCGCCTCCTCCTCCTCCACCTCTTCCACCTCCGCCT
CCCAATCCAATCCGGTCCCTCATGTCAATGATCCGGAAGCGATCCCACCCCAGTGGCGGTAGCA
CTAAGAAGGAAAAGGCAACTCAGCCAGAGACAGCTGAGGAAGTCACAGACCTGAAGAGGCAAGC
AGTGGAAGAGATGATGGACAGAATTAAAAAGGGAGTTCATCTTAGACCAGTTAACCAGACAGCC
AGACCCAAGGCAAAGCCAGACTCTCTAAAGGGCTCAGAAAGTGCAGTGGATGAACTGAAGGGAA
TCCTGGCCTCCCAGTAAAGGTGGATACAGGAGAAAATGTGTGGGCAGTGAAAACCAGTCTGAGC
CGGTTGTAGTTTTAGATCCTGTTTCTACACATGAACCCCAAACCAAAGACCAGGCTGCTGAGAA
AGACCCAACCCAATGCAAGGAGGAGGAGAGAGGCGAAACACAACCAGAATTCAAAGAAGACAGC
AGTGGTGGAAAAACGGGAGAGACGGACAGTTCTAACTGCTGATCTGAAACCAGAGGCTGGCGTG
TTTGCGGGGCCTTCTCAGTGAGCACGTGGTTCACCTGTGTGTACTGTCAAGAACTGTTGGACAT
TCCTTTGTTCCCCACACTCCTTTGCTGGTATCACTTTGTAAGTAGCAATTATGAACATAAGTAA
GCTGTTTAGCAAAACGCATCTTCTGGGTAGTTTTTAATCTTTACGGGGTAAGGGTTCTTTCTAG
TTTCTATATGAAGTATGACTTTCTTGAGACTGTGGCAGAACTCAGATGTTGGTGTCTTTACAGG
GAACGTGCTTACCACTCATCAAATTATTCATGGGAAAATTAAAGGTGGTTGCTGGTAACTGGAT
AAACAGAGACCACCAAACTTAACAATTATCTTAAGGGGCACCCTCTAATCCAAGCCCAGCACAT
GGGGAGACTAAGGCAAGAGGATCACTTGAGCCTGAGCTTGAGTTCGGGTCACATAGCAAGACTC
CATATAAAGAAAAGGCCTGGAAGAGTCTCTTGTTTGAGTCTGGTCTTCTGATGGGAAACTGCAG
CAGTCAGGACATTAGTGGGTCCTTTAGAGTCTCCATTTTGTAGGGTACACGAGACCGGCCAGCT
CTGAGCTCAGGAGGTGGCATCATGGTCTCTTAGGTCTGAGTTGAGCACAGTTGACTATTGTGTG
GAAAACGTGACCCTGTGTCCCAGGCTTAGAGAGTCCTTCAGGGGTGATATCCTGGCAGCCTCAA
CAGAGACTTGGACAGATGCTCAAACCTTGAATTTAACAGGGATGTCTCAGTAAACTACCCATTC
TGTTCCATGAGTTAACTGTGTTTTCCCACACATTCACAGGGCACAAGTACCATATGTAACGCCC
GTTCTTATGCACAGGGAAGATAAGTAACAAGCACACATTGTTTTTCTTCCTTCACTGAGGATCT
ATACTACATGGGTCTTTTCTTGTTTTGTTTTTTTGTTTGTTTGTTTTTAGGGGAAATTAAGTGG
TAGTTTCTAAAAATACAATGTTTCAGACTACCACGGTGACTAAATAGAAATGTAATCAGGGATT
TAAGAAAAAAAACTTATGCAGGTTTTCAAAGTTGATTGTTTCAAAATTGGTGTTTATTTAAAAT
AAGTGGTAATGTACTTGAGTGCACTTTTTATGATAATGATTCAGTAATGGTAATTTTACTATTA
AGGAAATCGAAAGGCTTAGTTTTGTTAGCATGACTCGGCATGTAGCTGTCAGGTGCTCCCCACC
TGAGGGCAAAAGAAAATGATAGTAACAATTGCAGTAGTTGTATCCTATTGTATTTTTGCACGTG
TGCTACTAGTGGGCCTGGGGAGGTGGGAAGGCAGGTGAGGATACTTCCTCGGCTTGGGGACAAT
TCTCTTTCTGTAGGTTCACTGGGCTTGACTATTTCCCCTGTCTGTCAGTGCTGATTTTATATCC
CTGTCAGTTTACTCATGGGGAATTAAAACATGATTTTTTTTTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001073173	(Get FASTA)	NCBI Sequence Viewer
	NP_001290466	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A0MZ67	(Get FASTA)	NCBI Sequence Viewer
	ABK56020	(Get FASTA)	NCBI Sequence Viewer
	ABK56023	(Get FASTA)	NCBI Sequence Viewer
	EDL94552	(Get FASTA)	NCBI Sequence Viewer
	EDL94553	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061843
	ENSRNOP00000061843.4
	ENSRNOP00000074944
	ENSRNOP00000074944.2
	ENSRNOP00000091450.1

RefSeq Acc Id:	NP_001073173 ⟸ NM_001079705
- Peptide Label:	isoform 1
- UniProtKB:	A0MZ64 (UniProtKB/Swiss-Prot), A0MZ67 (UniProtKB/Swiss-Prot), A6JI78 (UniProtKB/TrEMBL), A0A8I6AFL7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKETCDKIRQERDEAVKKLEEFQKISHMVIE EVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINIDDDDPGTDT DAAAETCVSVQCQKQIKELRDQIVSVQEEKKVLAIELESLKSKLGEVMEEVNKVKQEKAVLNSE VLEQRKVLEKCNRVSVLAVEEYEELQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSS LPDQQLLKALDENAKLIQQLEEERIQHQQKVKELEERLENEALHKEIHNLRQQLELLEDDKREL EQKYQSSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPS GGSTKKEKATQPETAEEVTDLKRQAVEEMMDRIKKGVHLRPVNQTARPKAKPDSLKGSESAVDE LKGILGTLNKSTSSRSLKSLGPENSETELERILRRRKLTAEADSSSPTGILATSESKSMPVLGS VSSVTKSALNKKTLEAEFNNPCPLTPEPGEGPRKLEGCTNSKVTFQPPSKGGYRRKCVGSENQS EPVVVLDPVSTHEPQTKDQAAEKDPTQCKEEERGETQPEFKEDSSGGKTGETDSSNC hide sequence

RefSeq Acc Id:	NP_001290466 ⟸ NM_001303537
- Peptide Label:	isoform 2
- UniProtKB:	A0MZ67 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKETCDKIRQERDEAVKKLEEFQKISHMVIE EVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINIDDDDPGTDT DAAAETCVSVQCQKQIKELRDQIVSVQEEKKVLAIELESLKSKLGEVMEEVNKVKQEKAVLNSE VLEQRKVLEKCNRVSVLAVEEYEELQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSS LPDQQLLKALDENAKLIQQLEEERIQHQQKVKELEERLENEALHKEIHNLRQQLELLEDDKREL EQKYQSSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPS GGSTKKEKATQPETAEEVTDLKRQAVEEMMDRIKKGVHLRPVNQTARPKAKPDSLKGSESAVDE LKGILASQ hide sequence

RefSeq Acc Id:

ENSRNOP00000074944 ⟸ ENSRNOT00000085778

RefSeq Acc Id:

ENSRNOP00000061843 ⟸ ENSRNOT00000064463

RefSeq Acc Id:

ENSRNOP00000091450 ⟸ ENSRNOT00000104427

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0MZ67-F1-model_v2	AlphaFold	A0MZ67	1-633	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691017

Promoter ID:

EPDNEW_R1538

Type:

multiple initiation site

Name:

Shtn1_1

Description:

shootin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	280,233,865 - 280,233,925	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311558	AgrOrtholog
BioCyc Gene	G2FUF-55263	BioCyc
Ensembl Genes	ENSRNOG00000018350	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064463	ENTREZGENE
	ENSRNOT00000064463.4	UniProtKB/TrEMBL
	ENSRNOT00000085778	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000085778.2	UniProtKB/Swiss-Prot
	ENSRNOT00000104427.1	UniProtKB/TrEMBL
InterPro	Shootin-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:292139	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	292139	ENTREZGENE
PANTHER	PTHR46606	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SHOOTIN-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Shtn1	PhenoGen
RatGTEx	ENSRNOG00000018350	RatGTEx
UniProt	A0A0G2K9C4_RAT	UniProtKB/TrEMBL
	A0A8I6AFL7	ENTREZGENE, UniProtKB/TrEMBL
	A0MZ64	ENTREZGENE
	A0MZ67	ENTREZGENE
	A6JI78	ENTREZGENE, UniProtKB/TrEMBL
	D4A6P3_RAT	UniProtKB/TrEMBL
	SHOT1_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	A0MZ64	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-06-08	Shtn1	shootin 1	RGD1311558	similar to 4930506M07Rik protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1311558	similar to 4930506M07Rik protein	RGD1311558_predicted	similar to 4930506M07Rik protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1311558_predicted	similar to 4930506M07Rik protein (predicted)	LOC292139_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC292139_predicted	similar to 4930506M07Rik protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar