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Gene Ontology AnnotationsGene Ontology Annotations
Gene Ontology AnnotationsBiological Process Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | cell adhesion | | IEA | UniProtKB-KW:KW-0130 | 1600115 | GO_REF:0000038 | UniProtKB | GO_REF:0000038 | cell adhesion | | ISO | RGD:1322518 | 1624291 | UniProtKB:Q60718 | RGD | PMID:21060781 | integrin-mediated signaling pathway | | IEA | UniProtKB-KW:KW-0401 | 1600115 | GO_REF:0000038 | UniProtKB | GO_REF:0000038 | neutrophil chemotaxis | | ISO | RGD:1322519 | 1624291 | MGI:MGI:98389 | RGD | MGI:MGI:4947877 PMID:21321126 | wound healing | | IEP | | 2317877 | | RGD | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Pathway AnnotationsGene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations| External Database Links | |
| KEGG Pathway | Arrhythmogenic right ventricular cardiomyopathy (ARVC) |
| Cell adhesion molecules (CAMs) | |
| Dilated cardiomyopathy | |
| ECM-receptor interaction | |
| Focal adhesion | |
| Hypertrophic cardiomyopathy (HCM) | |
| PI3K-Akt signaling pathway | |
| Regulation of actin cytoskeleton | |
| Pathway Interaction Database | Alpha9 beta1 integrin signaling events (PID:200093) |
| Arf6 trafficking events (PID:200057) | |
| Beta1 integrin cell surface interactions (PID:200016) | |
| CXCR4-mediated signaling events (PID:200099) | |
| Integrin family cell surface interactions (PID:200039) | |
References - curated| 1. |
Forsberg E, etal., Exp Cell Res. 1994 Jul;213(1):183-90. |
| 2. |
Giebel J, etal., Int J Androl. 1997 Feb;20(1):3-9. |
| 3. |
GOA data from the GO Consortium |
| 4. |
Hynes RO Cell 2002 Sep 20;110(6):673-87. |
| 5. |
MGD data from the GO Consortium |
| 6. |
Pipeline to import KEGG annotations from KEGG into RGD Pathway Ontology |
| 7. |
RGD automated import pipeline for gene-chemical interactions |
| 8. |
Yoshimura E, etal., Histochem Cell Biol. 1999 Apr;111(4):259-64. |
References - uncuratedRGD Disease Portals| Itga9 has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| Itga9 (Rattus norvegicus) |
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| ITGA9 (Homo sapiens) |
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| Itga9 (Mus musculus) |
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Position Markers| D2Mgh4 |
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| D8Got193 |
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| D8Got195 |
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| D8Got167 |
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| AU047111 |
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| D9Ertd428e |
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| RH132998 |
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| RH144307 |
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| BE102516 |
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| AU048253 |
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| AU049476 |
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QTLs in Region (RGSC Genome Assembly v3.4)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | XM_001061864 | (Get FASTA) | Search GEO for Microarray Profiles |
| XM_002727107 | (Get FASTA) | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR06057525 | (Get FASTA) | Search GEO for Microarray Profiles |
| AABR06057526 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AABR06057527 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AABR06057528 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AABR06057529 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AABR06057530 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AABR06057531 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AABR06057532 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AABR06057533 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AABR06057534 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AABR06057535 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01057497 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01057498 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01057499 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01057500 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01057501 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01057502 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01057503 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01057504 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01057505 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CA512590 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CF109211 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CK359386 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | XM_002727107 | ||||||||||
| RefSeq Status: | |||||||||||
| Type: | CODING | ||||||||||
| Protein Acc Id: | XP_002727153 | ||||||||||
| Position: |
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| RefSeq Acc Id: | XM_001061864 | |||||||||||||||
| RefSeq Status: | ||||||||||||||||
| Type: | CODING | |||||||||||||||
| Protein Acc Id: | XP_001061864 | |||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | XP_001061864 | (Get FASTA) |
| XP_002727153 | (Get FASTA) |
Strain Sequence Variants
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External Database Links| Database | Acc Id | Source(s) |
| Ensembl Genes | ENSRNOG00000043167 | UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000015113 | UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000015113 | UniProtKB/TrEMBL |
| Entrez Gene | 685004 | ENTREZGENE |
| HomoloGene Group ID | 1664 | ENTREZGENE |
| InterPro | Int_alpha_beta-p | UniProtKB/TrEMBL |
| Integrin_alpha | UniProtKB/TrEMBL | |
| Integrin_alpha-2 | UniProtKB/TrEMBL | |
| Integrin_alpha_C_CS | UniProtKB/TrEMBL | |
| IPI | IPI00560588 | UniProtKB/TrEMBL |
| KEGG Report | rno:685004 | ENTREZGENE |
| Pfam | Integrin_alpha2 | UniProtKB/TrEMBL |
| PRINTS | INTEGRINA | UniProtKB/TrEMBL |
| PROSITE | FG_GAP | UniProtKB/TrEMBL |
| INTEGRIN_ALPHA | UniProtKB/TrEMBL | |
| SMART | Int_alpha | UniProtKB/TrEMBL |
| UniGene | Rn.38697 | ENTREZGENE |
| UniProt | D3ZN51_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2009-09-09 | Itga9l | integrin alpha 9-like | Itga9 | integrin alpha 9 | Data Merged | 9333 | APPROVED |
| 2009-09-09 | Itga9 | integrin, alpha 9 | Itga9l | integrin alpha 9-like | Nomenclature updated to reflect human and mouse nomenclature | 10779 | APPROVED |
| 2008-03-14 | Itga9 | integrin alpha 9 | Itga9 | integrin alpha 9 | Nomenclature updated to reflect human and mouse nomenclature | 10779 | APPROVED |
| 2008-03-13 | Itga9 | integrin alpha 9 | LOC685004 | similar to integrin alpha 9 | Nomenclature updated to reflect human and mouse nomenclature | 10779 | APPROVED |
| 2008-03-13 | Itga9l | integrin alpha 9-like | Itga9 | integrin alpha 9 | Nomenclature updated to reflect human and mouse nomenclature | 10779 | APPROVED |
| 2008-01-09 | LOC685004 | similar to integrin alpha 9 | LOC687154 | similar to integrin alpha 9 | Data Merged | 23187 | APPROVED |
| 2006-11-19 | LOC685004 | similar to integrin alpha 9 | Symbol and Name status set to provisional | 1724 | PROVISIONAL | ||
| 2006-11-19 | LOC687154 | similar to integrin alpha 9 | Symbol and Name status set to provisional | 1724 | PROVISIONAL | ||
| 2005-12-06 | Itga9 | integrin alpha 9 | Itga9_predicted | integrin alpha 9 (predicted) | Symbol and Name updated | 14393 | APPROVED |
| 2005-01-12 | Itga9_predicted | integrin alpha 9 (predicted) | Symbol and Name status set to approved | 1724 | APPROVED |
| More on Itga9 | |
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Entrez Gene |
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Ensembl Gene |
| Genome Browser |
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NCBI Map Viewer |
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Vista |
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Vista + UCSC |
| RGD Object Information | |
| RGD ID: | 1311191 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2013-04-16 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.