Cdc42ep1 (CDC42 effector protein 1)

Gene: Cdc42ep1 (CDC42 effector protein 1) Rattus norvegicus

Analyze

Symbol:

Cdc42ep1

Name:

CDC42 effector protein 1

RGD ID:

1311131

Description:

Predicted to enable small GTPase binding activity. Predicted to be involved in Rho protein signal transduction; positive regulation of cellular component biogenesis; and regulation of cell shape. Predicted to be located in endomembrane system. Predicted to be active in cytoplasm; cytoskeleton; and plasma membrane. Orthologous to human CDC42EP1 (CDC42 effector protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

binder of Rho GTPases 5; CDC42 effector protein (Rho GTPase binding) 1; LOC315121

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDC42EP1 (CDC42 effector protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cdc42ep1 (CDC42 effector protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdc42ep1 (CDC42 effector protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDC42EP1 (CDC42 effector protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDC42EP1 (CDC42 effector protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdc42ep1 (CDC42 effector protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDC42EP1 (CDC42 effector protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDC42EP1 (CDC42 effector protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdc42ep1 (CDC42 effector protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CDC42EP1 (CDC42 effector protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cdc42ep1 (CDC42 effector protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdc42ep1a (CDC42 effector protein (Rho GTPase binding) 1a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdc42ep1b (CDC42 effector protein (Rho GTPase binding) 1b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cdc42ep1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	112,275,759 - 112,283,665 (+)	NCBI		GRCr8
mRatBN7.2	7	110,395,287 - 110,403,203 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	110,395,332 - 110,403,200 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	112,149,772 - 112,153,352 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	114,373,302 - 114,376,882 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	114,341,654 - 114,345,256 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	120,063,256 - 120,071,154 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	120,067,379 - 120,071,440 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	120,054,419 - 120,062,287 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	116,807,762 - 116,811,364 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	116,842,093 - 116,844,627 (+)	NCBI
Celera	7	106,734,034 - 106,737,614 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenylosuccinase lyase deficiency (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

genetic disease (ISO)

myoclonic dystonia 26 (ISO)

neurodegeneration with brain iron accumulation 2A (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

amitrole (EXP)

aristolochic acids (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cisplatin (ISO)

clobetasol (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

diazinon (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

fenamidone (ISO)

FR900359 (ISO)

furan (EXP)

genistein (ISO)

lead(0) (ISO)

methimazole (EXP)

N-methyl-4-phenylpyridinium (ISO)

N-Nitrosopyrrolidine (ISO)

niclosamide (ISO)

ochratoxin A (EXP)

orphenadrine (EXP)

oxaliplatin (EXP)

ozone (ISO)

p-toluidine (EXP)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorononanoic acid (ISO)

propiconazole (EXP)

quercetin (ISO)

rotenone (ISO)

sulfadimethoxine (EXP)

sulindac (ISO)

sunitinib (ISO)

testosterone (ISO)

testosterone undecanoate (ISO)

tetrachloromethane (EXP)

Theaflavin 3,3'-digallate (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triclosan (ISO)

trimellitic anhydride (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of actin filament polymerization (IBA,IEA)

positive regulation of pseudopodium assembly (IBA,IEA,ISO)

regulation of cell shape (IBA,IEA,ISO)

Rho protein signal transduction (IBA,ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO)

cytoskeleton (IBA)

endomembrane system (IEA)

membrane (IEA)

plasma membrane (IBA)

Molecular Function

protein binding (ISO)

small GTPase binding (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10490598	PMID:11035016	PMID:12477932	PMID:15489334	PMID:21423176	PMID:25468996

Genomics

Comparative Map Data

Cdc42ep1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	112,275,759 - 112,283,665 (+)	NCBI		GRCr8
mRatBN7.2	7	110,395,287 - 110,403,203 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	110,395,332 - 110,403,200 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	112,149,772 - 112,153,352 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	114,373,302 - 114,376,882 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	114,341,654 - 114,345,256 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	120,063,256 - 120,071,154 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	120,067,379 - 120,071,440 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	120,054,419 - 120,062,287 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	116,807,762 - 116,811,364 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	116,842,093 - 116,844,627 (+)	NCBI
Celera	7	106,734,034 - 106,737,614 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

CDC42EP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	37,560,480 - 37,569,405 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	37,560,480 - 37,569,405 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	37,956,487 - 37,965,412 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	36,286,446 - 36,295,358 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	36,280,999 - 36,289,908	NCBI
Celera	22	21,758,351 - 21,767,271 (+)	NCBI		Celera
Cytogenetic Map	22	q13.1	NCBI
HuRef	22	20,923,769 - 20,932,624 (+)	NCBI		HuRef
CHM1_1	22	37,915,221 - 37,924,140 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	38,021,773 - 38,030,667 (+)	NCBI		T2T-CHM13v2.0

Cdc42ep1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	78,726,847 - 78,735,102 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	78,726,824 - 78,735,097 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	78,842,647 - 78,850,902 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	78,842,624 - 78,850,897 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	78,673,077 - 78,681,332 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	79,572,076 - 79,578,545 (+)	NCBI		MGSCv36	mm8
MGSCv36	15	78,669,902 - 78,678,157 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	15	E1	NCBI
cM Map	15	37.7	NCBI

Cdc42ep1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	23,984,691 - 23,987,257 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	23,984,691 - 23,987,753 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDC42EP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	47,421,047 - 47,429,989 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	50,109,618 - 50,118,556 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	18,478,478 - 18,487,416 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	36,312,083 - 36,319,934 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	36,316,902 - 36,319,349 (+)	Ensembl	panpan1.1		panPan2

CDC42EP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	27,016,415 - 27,020,700 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	27,017,077 - 27,019,582 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	26,971,038 - 26,978,828 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	27,808,320 - 27,816,110 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	27,808,325 - 27,816,775 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	27,530,411 - 27,538,222 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	27,839,099 - 27,846,878 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	28,016,611 - 28,024,405 (-)	NCBI		UU_Cfam_GSD_1.0

Cdc42ep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	10,478,771 - 10,482,856 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936492	3,489,185 - 3,493,231 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDC42EP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	10,241,691 - 10,252,986 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	10,244,625 - 10,253,430 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	7,802,458 - 7,811,225 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDC42EP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	20,264,361 - 20,274,438 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	20,264,082 - 20,276,266 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	105,551,247 - 105,560,482 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdc42ep1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	10,322,267 - 10,324,549 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	10,321,256 - 10,325,884 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cdc42ep1
51 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	127
Count of miRNA genes:	97
Interacting mature miRNAs:	109
Transcripts:	ENSRNOT00000011270
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	41333674	119109060	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	44421311	118198041	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	68938720	113886318	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	68938720	113886318	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	68938720	113886318	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	69736226	117455174	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	69736356	112729554	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	73829340	130221005	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	80221299	112308525	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	80221299	124373579	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	80221299	125221299	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	81737938	126737938	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	83153392	128153392	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
71114	Niddm14	Non-insulin dependent diabetes mellitus QTL 14	4.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	84257275	129257275	Rat
2298475	Eau6	Experimental allergic uveoretinitis QTL 6		0.0029	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	7	84257275	129257275	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	91412594	129807172	Rat
2313102	Bmd79	Bone mineral density QTL 79	2.3	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	7	94811085	116738842	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	94811326	116294265	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	103146217	116738842	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat

Markers in Region

RH130148

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	110,403,026 - 110,403,182 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	120,070,978 - 120,071,133	NCBI	Rnor6.0
Rnor_5.0	7	120,062,111 - 120,062,266	UniSTS	Rnor5.0
RGSC_v3.4	7	116,811,188 - 116,811,343	UniSTS	RGSC3.4
Celera	7	106,737,438 - 106,737,593	UniSTS
RH 3.4 Map	7	838.5	UniSTS
Cytogenetic Map	7	q34	UniSTS

RH128291

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	110,403,199 - 110,403,410 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	120,071,151 - 120,071,361	NCBI	Rnor6.0
Rnor_5.0	7	120,062,284 - 120,062,494	UniSTS	Rnor5.0
RGSC_v3.4	7	116,811,361 - 116,811,571	UniSTS	RGSC3.4
Celera	7	106,737,611 - 106,737,821	UniSTS
Cytogenetic Map	7	q34	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	37	40	33	6	33	1	1	25	29	34	11	1
Low		6	17	8	13	8	7	10	49	6	7		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001079700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000011270 ⟹ ENSRNOP00000011269

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	110,395,349 - 110,402,979 (+)	Ensembl
Rnor_6.0 Ensembl	7	120,067,379 - 120,071,440 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101077 ⟹ ENSRNOP00000078201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	110,395,332 - 110,403,200 (+)	Ensembl

RefSeq Acc Id:

NM_001079700 ⟹ NP_001073168

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,280,063 - 112,283,665 (+)	NCBI
mRatBN7.2	7	110,399,601 - 110,403,203 (+)	NCBI
Rnor_6.0	7	120,067,552 - 120,071,154 (+)	NCBI
Rnor_5.0	7	120,054,419 - 120,062,287 (+)	NCBI
RGSC_v3.4	7	116,807,762 - 116,811,364 (+)	RGD
Celera	7	106,734,034 - 106,737,614 (+)	RGD

Sequence:

show sequence

TCTTCATCGAGAGGAAGGGGCTAAAAGGATCCCTGAACCCAGGCTGCCATCTTCCCTGGCCCCA
AGGTGGCATGGACTAGCAGTTGTAAGCAACCAAAGCTGATGCCCGGCCCCCAAGGGGGCACAGG
AGCCCCCAGCATGAGCCTGGGTAAGCTGTCTCCTGTGGGCTGGGTGCCCAGTTCTCATGGAAAG
AGGCGCCTGACAGCAGACATGATCAGTCCCCCGCTCGGGGACTTCCGCCACACCATGCACGTGG
GCCGTGGCGGGGACGTCTTCGGTGATACCTCCTTCCTCAGCAACCACGGAGGCCGCTCTGGAAA
CACCCACCGCTCGCCCCGAAGTTTTCTGGCCAGGAAGCTCCAGCAGGTACGCAGAGTCGGCGTG
CCCCCTCGAAGGATGGCTTCCCCGGCTGCAACGTCACCCGCCCCGCCTCCCATCTCTCCCATCA
TCAAGAATGCCATCTCCCTGCCCCAGCTCAACCAGGCCACCTATGACAGCCTGGTGGTGAGCAA
GCTGAGCTTTGATAGCACTCCGGCTAGCTCCACGGATGGCCGCTCCGGTTACGGCCTGGAGTCT
GGGTTCTGCACCATCTCACGCCTTCCACGAGTGGAAAAACACAGCAGCCGTGACCGTGACCATG
ACCGTGACCCGGACCATTCTCAAGACCGAGAGCAAAGTTCTTCCCCCTCTGAGCCTAACCCTAA
CCCTGAGCTTCGACGCTCTGACTCTCTCTTGTCCTTCCGTTTTGACCTTGACCTTGGGCCCTCA
CTCCTCAGTGAGCTGCTAGGAGTCATGAGCCTTTCAGAAGCCCCTGCTGCCAACCCCCCTGCTC
CTGCTGCCAACCCTGCCCCTACTGCAAAACCCCCAGCCGATGCAGTAACCACTCTAGACACTGT
GACAAGCCTTCCAGCCCCCACGGCAAGCTCCCCATCCAGTGGACGTTTCCCCAATGGGGTAACT
GCCGTGTTGGGCCCCGTGGCTGAGGTAAAGGCCAGTCCTGTGGGAGAGGGTCCCCAGGTACCCT
CCAAAATGGCCTTTGACAGGCGTGGAGCCAGCTGGGGGGCCATCCGGGCCAGCCGTCACTACAC
GGAGATGGATGCGCGGCGGGAGCTGGCAGGGGTCCTACCCCAAGTCCATGGCTCCTGGGAGAGT
CTGAATGAAGAATGGAGTGCACCTCCGGCCAGCAGCAGGGCTCCTGTGCCCAGCACGGTGCAGG
CCAATGCCTTTGAGTTTGCTGACGCTGATGAGGATGACGAGGTCAAGGTGTGAGAGACTGGCCG
TGGGCCCAGGTCCTGCCAGCCTAGGGGCTCACACAGAAGGGCTGAGTTAATTTCCTTAACGACT
GCGTCTGTCCTCAAGACATGGTCACCTGCCCAACGGGAGTTGCCCCAAATCCTTCCTGCTCTAT
GCAAGGCAGGCTTGGATGTGGGGAGGGTCCCTGCTGACCTGACCCAGCTCCCTCCATGCCCCTA
GGCCCACTAGCCCTTTAGTCATAACATATGCCACCCCCCTGTGGCCTGACAGTATGGCCTTTGT
GCCCCAAGATGTTTCCCTGGTGGGTGGGGGTGGGGCAAGGACCACACAGGGCCATTGTCTGAGT
GGGACTGCCTGCCCCTGCTCATGGAGAGCTGCCGCAGAAGGCCACCACTGTGTTTTCAATAGCT
GGTTCCAGGCTTCTCCTCAGTTCCCTGAGAAAGGTCAGGTGTGACCTCTAAGTAGATTCTATCT
TATGTGTACCCCAGAGCTGCCTCCCATGCCTGATTGTAAAAGCCTTTCTGGTAAGATCTGTCTG
CCCAAGGAGGCAGGCCTTGGCCCCTGCCGAGGTGTACTTTATCCTCCTGGGAGTTTGGAAAGTT
GAGGACCCCCTTCCAGCAACCCCCCTCCAGCTAGGAGAGGGGGGCCAGACGAGGTAATGAGTAA
CCAGCCTGGAATGTTGGAAGATAAGAGGCCCAGGTGGGACCCTTATCTCCAGTTCCTGGAACAC
CCCTGCCCCAGGTGCCAGGAACCAGTATCTGCCCCATAATCCCATGGGGCAGCTTGGCAGGTGC
TCAGATCACCCGGAGAGAGACAGGTTCCCATGCACAGGGTGGCTCAGGATCACCTCCCGTCCTC
TTCTCTTGGCAATGCTATACCCTGTGCCTCAGTTTCCTCCCCTGCACCAAAGACGGGGAGCATT
AACACTTATGGAAAGTGCTAACAGTTCTTGCTGTGGAAATAATAAAAATGGATTCTTTTAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017594865 ⟹ XP_017450354

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,275,807 - 112,283,665 (+)	NCBI
mRatBN7.2	7	110,395,943 - 110,403,203 (+)	NCBI
Rnor_6.0	7	120,063,381 - 120,071,154 (+)	NCBI

Sequence:

show sequence

GTGGGCGCGGGCCGGGGGAGTGCACACTGTCTTGGGCGCGTGGGGCCAAGCGGTAGAAGGCCAG
GGTGTTCAGACTTCTCGGGTGGTTTTGACACGTTGCGGGAGGTCAGGGCACCAAAACCGAAGCA
CAGCGCTGTGTATACTGGGACTCGGGGAGAGGGCGAGCCTAGGGCCGTCTGCGGCATTTCTGCG
CGGGCAACGGAAGGGAAGGGACCCCAGGGCCTCTCGGCGACGCCAGCGCGGGAGCGGGAAGCTG
GGGGGTGGGGGAGACGGACGATGGGGACAGGGCACCCTGCCCCCTCCCCAGCTGCATTCCAGGC
TGGAGCAGCAGATGAGGTCATCCCGTCCGGTTCCCTTCTGGCCAAGGCAGCCGCTGCCCTCTGT
CCGCGCGGGACGGGAGCGAGAGACTCTCCCAAAGTCTCCCTTCCGAGGTCCCCAGAAGTGAGTG
TTTCCTGGTTGAAGTCTTTCCTGGACTTCCCATCCCAACTGATTCTGCCCTTCGCCCAACTTTG
CAAGACTCACCAAGTTTTGAAGGCCGTTTTCTAGAATGGGAAACTGAGGCTGAGAGAGCACAGC
GGTGGAGTGAAGGGCTGTTTAATTTTAACTCAGGGTGCTGGGGCAGGAAGAAGTCTTAGTCGGT
AGTGTCACACAGCTTAATACCACCACTTGGGAAACTGAGGCAGGACGGTCACAATTTCGAGGTC
AGCCAGGGCTGTATGTATATCCTACCGGCCGTGAAAGCTCAGAGAAGCCTGAAGTTCAGAGAAG
CAGGATCCGGGAAGGTAACTCTGGGTAGCTTGCCTAAGTTTCTCTGTCTTCACCCCCAAAGTGC
TGGCCTTTGAGGGGATGCCCCTGGAAGACTTCTAATCCCAAATGTTACAGATTGGGGGAAAATA
TGAAGCACAGTTTCCACAGGTCAGTGTTGATATCAAAGAGGTTCCCCGTACCTGCCCCACCTGC
GCCCCCAGCAGGCTGCCCCGGAGGTAGGGCTCCGCACACCTGCCCGAGGGTGTGTCTGGGTACT
CCAAGGAGCGGCGCCTCTGCTCACCCCGCTTCCCCACCATCGGGCCACGTGCCCAGTAAATCTA
AGAGTTCTGTGGGGATACTGAGGTCTCACTGTGGCCACCCATGCCCTGGTCACCGACTATGAAG
TGCAGAGCCTGGGTCCCATTCCTGCGTGCTAGCTTCCTCATATCTGCTACCTTCATTCAGATGG
TTAAGGCAACTCTGCCAGTGTTGGTAGAATGTAAGCTCCAGGGTTCCTGCTATTTTTGTTCTGT
AATCTGGATCCCTGCCGCCCCCCCCCCACACTATGTAAGGTGGGAGACATAAGCATTTACAGGT
ACTATTTCCTGGGCCACCTAAAGGCCAGCAACAGTCTGTGGTTAGTTAGCTCCACGTGGTAGAT
GGCTGGAAGGAAAGATTCCCCTTCCTCATGAAATGTTGGATTCAAACCCAGCCCTGCCCTGCTC
CAGGATGGGAGAACTGAGTTTCTCCATTCTCTGGCAGAGGTGGCTCCTGCTTTCTCCAAGGGAA
AACAGGAGCAGTAGATGAAGTTGAGCCGGGGCGCTCTGCCTCAGTAAGTGGGTGAGGAGGATGC
TACCTAGAGGTGCCCAGAGCATTTGGGGGGTGGCTTCATCACAGGGATGGTCAAGGGGTGAGAT
GGGGACAGGACCTCTCTCCCTGGAAGAACTTCAGACGTTAGAGGATCTGGTGGGAAGGGCACGT
GTTCACACGGAGGGGACAGTTGACCCTTCCACGTACCATTTTGCAGAGTGAGCCCTACACAACT
CCATAACGCCTTCCTCTGAAGACTAGTTTTTATAGTACAGGGGAAACCTGGCCAGTGTTTACCT
GCCACGGGACCTTGGATGAGTCTGTTGCCTGGCTGGGCTGGCCATGTCAGCCTTCTTTGTAGCC
TGAGCCAGCCTTCCAGCCTCAGGGGGGTGTTGGAGACTCATCTGATGACATCATGTCATTGGTC
GACCAACAGCAAAGCAGAGTGCTTTATAACTCCAGCAAACATTCCACGAGGACCTCTCGGTACT
GGGGGTGCCAGGGAAAAGGATGATTCAGAAGTTGCACCCCCCCAGGTGGGGGAGGAGCTAGGGT
TGGAGGAGGATCCAGTGGTAGGACGGAAGAGAATGTAGTCCCAAAACAAAGCAAGCTTTGTCCA
GTTCTCCTCTTTGTTTTATCTTGTTAGTTAACCTATTTTGAATTTCAAATAACATTATGGAAGG
GCTGCACTGAGAATAGTTCTTATGCTTGGAGGCGGCTCCAGAGCTTTGGAAAATTAAAAACAAA
CAAAAAAAAAAAAAAAACAAGAACCAAAGTTGAAACTCCGGGCTAGATCTTTATCCGCTGAGCA
GGTGTGTGGAGGTGACTTGCCCAAGGTCACAGGGTGAGGACTCTGAGTCCCCAGCCTACTCTAC
CCTCTCAGAAGGTGCCAGGGGGTGGTCCTTTGGCCGGAAGGTTATCTCAGCTAGTGATTAGGCT
GGCCACGTGCTGAGTGCTGGGAGGGAGAGAGGCTGGAAAATCCAGGCCTTGCCCCACCCTCACC
TTGCTCAGGGAGACAAGACTGGGCCCCAAAAGCTGGTAAGAGCTTGAGTGAGTCAGAGGCACCG
AGTTCAAGTCGGGACTAGCTTTTTGATGGGACCTTGAGCAAGCTTGGCCTTCACTAGGTCACAG
AAAAATCAGAGTTCAGGGTATAGGATCCCAAATGTTCTCTAACCCCATAAGGAAGGAGAAAGAG
AACACAGAGGAACCAGCCAAAAAGGTACAACAGCAGAGGGACCATGAGGGCTCAGAAGGGACAT
TGATAGGTAGGGAGAAGCTTTCGACACTCACGGACTTTTTGCCCCCCTAAAACTTGTTCCCCCA
ACAACAAGACTCCTATATCGACTTGGCCATCAGATAAAGTCCTTTCTTGCAGGCCTTCTCAGAG
CCTTGAGTCAGCTTAAGTGTGCAGGAGCCAGCTGGAAAAAGCCACTTCTGACCACAGGGTCCCT
TTTCCAGGAAGCACCTCGGAGGCAAAGGCTTCTGTGGAACGTCAGTCGGCTGGCTGTGAGGCAG
GCTGTGTACACAGCCGTTCACAAGACCTTGGCAGGGCGCCGCCTTTCTCCTGACCTCCCCAGGT
CTCCGCTCCAGGGCAGGGACCACCCTCATTTAAGGCCCATCTCTTATCGCCTTCGAGCAGCCTC
ACCAGGACCAGGAGCAGGGCCTCTGGGAGAGAGAACCCATAGACTCCCTTGGCCTCAGCACTGG
GGACAGTGCCTTAATAGAGTCAAGGGTTTGCCTTCTGCTTGGCCATCTTCATCGAGAGGAAGGG
GCTAAAAGGATCCCTGAACCCAGGCTGCCATCTTCCCTGGCCCCAAGGTGGCATGGACTAGCAG
TTGTAAGCAACCAAAGCTGATGCCCGGCCCCCAAGGGGGCACAGGAGCCCCCAGCATGAGCCTG
GGTAAGCTGTCTCCTGTGGGCTGGGTGCCCAGTTCTCATGGAAAGAGGCGCCTGACAGCAGACA
TGATCAGTCCCCCGCTCGGGGACTTCCGCCACACCATGCACGTGGGCCGTGGCGGGGACGTCTT
CGGTGATACCTCCTTCCTCAGCAACCACGGAGGCCGCTCTGGAAACACCCACCGCTCGCCCCGA
AGTTTTCTGGCCAGGAAGCTCCAGCAGGTACGCAGAGTCGGCGTGCCCCCTCGAAGGATGGCTT
CCCCGGCTGCAACGTCACCCGCCCCGCCTCCCATCTCTCCCATCATCAAGAATGCCATCTCCCT
GCCCCAGCTCAACCAGGCCACCTATGACAGCCTGGTGGTGAGCAAGCTGAGCTTTGATAGCACT
CCGGCTAGCTCCACGGATGGCCGCTCCGGTTACGGCCTGGAGTCTGGGTTCTGCACCATCTCAC
GCCTTCCACGAGTGGAAAAACACAGCAGCCGTGACCGTGACCATGACCGTGACCCGGACCATTC
TCAAGACCGAGAGCAAAGTTCTTCCCCCTCTGAGCCTAACCCTAACCCTGAGCTTCGACGCTCT
GACTCTCTCTTGTCCTTCCGTTTTGACCTTGACCTTGGGCCCTCACTCCTCAGTGAGCTGCTAG
GAGTCATGAGCCTTTCAGAAGCCCCTGCTGCCAACCCCCCTGCTCCTGCTGCCAACCCTGCCCC
TACTGCAAAACCCCCAGCCGATGCAGTAACCACTCTAGACACTGTGACAAGCCTTCCAGCCCCC
ACGGCAAGCTCCCCATCCAGTGGACGTTTCCCCAATGGGGTAACTGCCGTGTTGGGCCCCGTGG
CTGAGGTAAAGGCCAGTCCTGTGGGAGAGGGTCCCCAGGTACCCTCCAAAATGGCCTTTGACAG
GCGTGGAGCCAGCTGGGGGGCCATCCGGGCCAGCCGTCACTACACGGAGATGGATGCGCGGCGG
GAGCTGGCAGGGGTCCTACCCCAAGTCCATGGCTCCTGGGAGAGTCTGAATGAAGAATGGAGTG
CACCTCCGGCCAGCAGCAGGGCTCCTGTGCCCAGCACGGTGCAGGCCAATGCCTTTGAGTTTGC
TGACGCTGATGAGGATGACGAGGTCAAGGTGTGAGAGACTGGCCGTGGGCCCAGGTCCTGCCAG
CCTAGGGGCTCACACAGAAGGGCTGAGTTAATTTCCTTAACGACTGCGTCTGTCCTCAAGACAT
GGTCACCTGCCCAACGGGAGTTGCCCCAAATCCTTCCTGCTCTATGCAAGGCAGGCTTGGATGT
GGGGAGGGTCCCTGCTGACCTGACCCAGCTCCCTCCATGCCCCTAGGCCCACTAGCCCTTTAGT
CATAACATATGCCACCCCCCTGTGGCCTGACAGTATGGCCTTTGTGCCCCAAGATGTTTCCCTG
GTGGGTGGGGGTGGGGCAAGGACCACACAGGGCCATTGTCTGAGTGGGACTGCCTGCCCCTGCT
CATGGAGAGCTGCCGCAGAAGGCCACCACTGTGTTTTCAATAGCTGGTTCCAGGCTTCTCCTCA
GTTCCCTGAGAAAGGTCAGGTGTGACCTCTAAGTAGATTCTATCTTATGTGTACCCCAGAGCTG
CCTCCCATGCCTGATTGTAAAAGCCTTTCTGGTAAGATCTGTCTGCCCAAGGAGGCAGGCCTTG
GCCCCTGCCGAGGTGTACTTTATCCTCCTGGGAGTTTGGAAAGTTGAGGACCCCCTTCCAGCAA
CCCCCCTCCAGCTAGGAGAGGGGGGCCAGACGAGGTAATGAGTAACCAGCCTGGAATGTTGGAA
GATAAGAGGCCCAGGTGGGACCCTTATCTCCAGTTCCTGGAACACCCCTGCCCCAGGTGCCAGG
AACCAGTATCTGCCCCATAATCCCATGGGGCAGCTTGGCAGGTGCTCAGATCACCCGGAGAGAG
ACAGGTTCCCATGCACAGGGTGGCTCAGGATCACCTCCCGTCCTCTTCTCTTGGCAATGCTATA
CCCTGTGCCTCAGTTTCCTCCCCTGCACCAAAGACGGGGAGCATTAACACTTATGGAAAGTGCT
AACAGTTCTTGCTGTGGAAATAATAAAAATGGATTCTTTTA

hide sequence

RefSeq Acc Id:

XM_017594867 ⟹ XP_017450356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,275,820 - 112,283,665 (+)	NCBI
mRatBN7.2	7	110,395,943 - 110,403,203 (+)	NCBI
Rnor_6.0	7	120,063,381 - 120,071,154 (+)	NCBI

Sequence:

show sequence

GTGGGCGCGGGCCGGGGGAGTGCACACTGTCTTGGGCGCGTGGGGCCAAGCGGTAGAAGGCCAG
GGTGTTCAGACTTCTCGGGTGGTTTTGACACGTTGCGGGAGGTCAGGGCACCAAAACCGAAGCA
CAGCGCTGTGTATACTGGGACTCGGGGAGAGGGCGAGCCTAGGGCCGTCTGCGGCATTTCTGCG
CGGGCAACGGAAGGGAAGGGACCCCAGGGCCTCTCGGCGACGCCAGCGCGGGAGCGGGAAGCTG
GGGGGTGGGGGAGACGGACGATGGGGACAGGGCACCCTGCCCCCTCCCCAGCTGCATTCCAGGC
TGGAGCAGCAGATGAGGTCATCCCGTCCGGTTCCCTTCTGGCCAAGGCAGCCGCTGCCCTCTGT
CCGCGCGGGACGGGAGCGAGAGACTCTCCCAAAGTCTCCCTTCCGAGGTCCCCAGAAGTGAGTG
TTTCCTGGTTGAAGTCTTTCCTGGACTTCCCATCCCAACTGATTCTGCCCTTCGCCCAACTTTG
CAAGACTCACCAAGTTTTGAAGGCCGTTTTCTAGAATGGGAAACTGAGGCTGAGAGAGCACAGC
GGTGGAGTGAAGGGCTGTTTAATTTTAACTCAGGGTGCTGGGGCAGGAAGAAGTCTTAGTCGGT
AGTGTCACACAGCTTAATACCACCACTTGGGAAACTGAGGCAGGACGGTCACAATTTCGAGGTC
AGCCAGGGCTGTATGTATATCCTACCGGCCGTGAAAGCTCAGAGAAGCCTGAAGTTCAGAGAAG
CAGGATCCGGGAAGGTAACTCTGGGTAGCTTGCCTAAGTTTCTCTGTCTTCACCCCCAAAGTGC
TGGCCTTTGAGGGGATGCCCCTGGAAGACTTCTAATCCCAAATGTTACAGATTGGGGGAAAATA
TGAAGCACAGTTTCCACAGGAAGCACCTCGGAGGCAAAGGCTTCTGTGGAACGTCAGTCGGCTG
GCTGTGAGGCAGGCTGTGTACACAGCCGTTCACAAGACCTTGGCAGGGCGCCGCCTTTCTCCTG
ACCTCCCCAGGTCTCCGCTCCAGGGCAGGGACCACCCTCATTTAAGGCCCATCTCTTATCGCCT
TCGAGCAGCCTCACCAGGACCAGGAGCAGGGCCTCTGGGAGAGAGAACCCATAGACTCCCTTGG
CCTCAGCACTGGGGACAGTGCCTTAATAGAGTCAAGGGTTTGCCTTCTGCTTGGCCATCTTCAT
CGAGAGGAAGGGGCTAAAAGGATCCCTGAACCCAGGCTGCCATCTTCCCTGGCCCCAAGGTGGC
ATGGACTAGCAGTTGTAAGCAACCAAAGCTGATGCCCGGCCCCCAAGGGGGCACAGGAGCCCCC
AGCATGAGCCTGGGTAAGCTGTCTCCTGTGGGCTGGGTGCCCAGTTCTCATGGAAAGAGGCGCC
TGACAGCAGACATGATCAGTCCCCCGCTCGGGGACTTCCGCCACACCATGCACGTGGGCCGTGG
CGGGGACGTCTTCGGTGATACCTCCTTCCTCAGCAACCACGGAGGCCGCTCTGGAAACACCCAC
CGCTCGCCCCGAAGTTTTCTGGCCAGGAAGCTCCAGCAGGTACGCAGAGTCGGCGTGCCCCCTC
GAAGGATGGCTTCCCCGGCTGCAACGTCACCCGCCCCGCCTCCCATCTCTCCCATCATCAAGAA
TGCCATCTCCCTGCCCCAGCTCAACCAGGCCACCTATGACAGCCTGGTGGTGAGCAAGCTGAGC
TTTGATAGCACTCCGGCTAGCTCCACGGATGGCCGCTCCGGTTACGGCCTGGAGTCTGGGTTCT
GCACCATCTCACGCCTTCCACGAGTGGAAAAACACAGCAGCCGTGACCGTGACCATGACCGTGA
CCCGGACCATTCTCAAGACCGAGAGCAAAGTTCTTCCCCCTCTGAGCCTAACCCTAACCCTGAG
CTTCGACGCTCTGACTCTCTCTTGTCCTTCCGTTTTGACCTTGACCTTGGGCCCTCACTCCTCA
GTGAGCTGCTAGGAGTCATGAGCCTTTCAGAAGCCCCTGCTGCCAACCCCCCTGCTCCTGCTGC
CAACCCTGCCCCTACTGCAAAACCCCCAGCCGATGCAGTAACCACTCTAGACACTGTGACAAGC
CTTCCAGCCCCCACGGCAAGCTCCCCATCCAGTGGACGTTTCCCCAATGGGGTAACTGCCGTGT
TGGGCCCCGTGGCTGAGGTAAAGGCCAGTCCTGTGGGAGAGGGTCCCCAGGTACCCTCCAAAAT
GGCCTTTGACAGGCGTGGAGCCAGCTGGGGGGCCATCCGGGCCAGCCGTCACTACACGGAGATG
GATGCGCGGCGGGAGCTGGCAGGGGTCCTACCCCAAGTCCATGGCTCCTGGGAGAGTCTGAATG
AAGAATGGAGTGCACCTCCGGCCAGCAGCAGGGCTCCTGTGCCCAGCACGGTGCAGGCCAATGC
CTTTGAGTTTGCTGACGCTGATGAGGATGACGAGGTCAAGGTGTGAGAGACTGGCCGTGGGCCC
AGGTCCTGCCAGCCTAGGGGCTCACACAGAAGGGCTGAGTTAATTTCCTTAACGACTGCGTCTG
TCCTCAAGACATGGTCACCTGCCCAACGGGAGTTGCCCCAAATCCTTCCTGCTCTATGCAAGGC
AGGCTTGGATGTGGGGAGGGTCCCTGCTGACCTGACCCAGCTCCCTCCATGCCCCTAGGCCCAC
TAGCCCTTTAGTCATAACATATGCCACCCCCCTGTGGCCTGACAGTATGGCCTTTGTGCCCCAA
GATGTTTCCCTGGTGGGTGGGGGTGGGGCAAGGACCACACAGGGCCATTGTCTGAGTGGGACTG
CCTGCCCCTGCTCATGGAGAGCTGCCGCAGAAGGCCACCACTGTGTTTTCAATAGCTGGTTCCA
GGCTTCTCCTCAGTTCCCTGAGAAAGGTCAGGTGTGACCTCTAAGTAGATTCTATCTTATGTGT
ACCCCAGAGCTGCCTCCCATGCCTGATTGTAAAAGCCTTTCTGGTAAGATCTGTCTGCCCAAGG
AGGCAGGCCTTGGCCCCTGCCGAGGTGTACTTTATCCTCCTGGGAGTTTGGAAAGTTGAGGACC
CCCTTCCAGCAACCCCCCTCCAGCTAGGAGAGGGGGGCCAGACGAGGTAATGAGTAACCAGCCT
GGAATGTTGGAAGATAAGAGGCCCAGGTGGGACCCTTATCTCCAGTTCCTGGAACACCCCTGCC
CCAGGTGCCAGGAACCAGTATCTGCCCCATAATCCCATGGGGCAGCTTGGCAGGTGCTCAGATC
ACCCGGAGAGAGACAGGTTCCCATGCACAGGGTGGCTCAGGATCACCTCCCGTCCTCTTCTCTT
GGCAATGCTATACCCTGTGCCTCAGTTTCCTCCCCTGCACCAAAGACGGGGAGCATTAACACTT
ATGGAAAGTGCTAACAGTTCTTGCTGTGGAAATAATAAAAATGGATTCTTTTA

hide sequence

RefSeq Acc Id:

XM_017594868 ⟹ XP_017450357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,275,759 - 112,283,665 (+)	NCBI
mRatBN7.2	7	110,395,297 - 110,403,203 (+)	NCBI
Rnor_6.0	7	120,063,256 - 120,071,154 (+)	NCBI

Sequence:

show sequence

CCGCCGAGCCCGCGGCCAGGGCGGCGCAGACCGGCCCAGCGACTCTCGGGCAGCGCAGGGACGC
GCCGCCGCGCCCGCCCCTGGACCCCCCACCCCACCCCCGGGCTCGACGACACGAGGTCTCCGCT
CCAGGGCAGGGACCACCCTCATTTAAGGCCCATCTCTTATCGCCTTCGAGCAGCCTCACCAGGA
CCAGGAGCAGGGCCTCTGGGAGAGAGAACCCATAGACTCCCTTGGCCTCAGCACTGGGGACAGT
GCCTTAATAGAGTCAAGGGTTTGCCTTCTGCTTGGCCATCTTCATCGAGAGGAAGGGGCTAAAA
GGATCCCTGAACCCAGGCTGCCATCTTCCCTGGCCCCAAGGTGGCATGGACTAGCAGTTGTAAG
CAACCAAAGCTGATGCCCGGCCCCCAAGGGGGCACAGGAGCCCCCAGCATGAGCCTGGGTAAGC
TGTCTCCTGTGGGCTGGGTGCCCAGTTCTCATGGAAAGAGGCGCCTGACAGCAGACATGATCAG
TCCCCCGCTCGGGGACTTCCGCCACACCATGCACGTGGGCCGTGGCGGGGACGTCTTCGGTGAT
ACCTCCTTCCTCAGCAACCACGGAGGCCGCTCTGGAAACACCCACCGCTCGCCCCGAAGTTTTC
TGGCCAGGAAGCTCCAGCAGGTACGCAGAGTCGGCGTGCCCCCTCGAAGGATGGCTTCCCCGGC
TGCAACGTCACCCGCCCCGCCTCCCATCTCTCCCATCATCAAGAATGCCATCTCCCTGCCCCAG
CTCAACCAGGCCACCTATGACAGCCTGGTGGTGAGCAAGCTGAGCTTTGATAGCACTCCGGCTA
GCTCCACGGATGGCCGCTCCGGTTACGGCCTGGAGTCTGGGTTCTGCACCATCTCACGCCTTCC
ACGAGTGGAAAAACACAGCAGCCGTGACCGTGACCATGACCGTGACCCGGACCATTCTCAAGAC
CGAGAGCAAAGTTCTTCCCCCTCTGAGCCTAACCCTAACCCTGAGCTTCGACGCTCTGACTCTC
TCTTGTCCTTCCGTTTTGACCTTGACCTTGGGCCCTCACTCCTCAGTGAGCTGCTAGGAGTCAT
GAGCCTTTCAGAAGCCCCTGCTGCCAACCCCCCTGCTCCTGCTGCCAACCCTGCCCCTACTGCA
AAACCCCCAGCCGATGCAGTAACCACTCTAGACACTGTGACAAGCCTTCCAGCCCCCACGGCAA
GCTCCCCATCCAGTGGACGTTTCCCCAATGGGGTAACTGCCGTGTTGGGCCCCGTGGCTGAGGT
AAAGGCCAGTCCTGTGGGAGAGGGTCCCCAGGTACCCTCCAAAATGGCCTTTGACAGGCGTGGA
GCCAGCTGGGGGGCCATCCGGGCCAGCCGTCACTACACGGAGATGGATGCGCGGCGGGAGCTGG
CAGGGGTCCTACCCCAAGTCCATGGCTCCTGGGAGAGTCTGAATGAAGAATGGAGTGCACCTCC
GGCCAGCAGCAGGGCTCCTGTGCCCAGCACGGTGCAGGCCAATGCCTTTGAGTTTGCTGACGCT
GATGAGGATGACGAGGTCAAGGTGTGAGAGACTGGCCGTGGGCCCAGGTCCTGCCAGCCTAGGG
GCTCACACAGAAGGGCTGAGTTAATTTCCTTAACGACTGCGTCTGTCCTCAAGACATGGTCACC
TGCCCAACGGGAGTTGCCCCAAATCCTTCCTGCTCTATGCAAGGCAGGCTTGGATGTGGGGAGG
GTCCCTGCTGACCTGACCCAGCTCCCTCCATGCCCCTAGGCCCACTAGCCCTTTAGTCATAACA
TATGCCACCCCCCTGTGGCCTGACAGTATGGCCTTTGTGCCCCAAGATGTTTCCCTGGTGGGTG
GGGGTGGGGCAAGGACCACACAGGGCCATTGTCTGAGTGGGACTGCCTGCCCCTGCTCATGGAG
AGCTGCCGCAGAAGGCCACCACTGTGTTTTCAATAGCTGGTTCCAGGCTTCTCCTCAGTTCCCT
GAGAAAGGTCAGGTGTGACCTCTAAGTAGATTCTATCTTATGTGTACCCCAGAGCTGCCTCCCA
TGCCTGATTGTAAAAGCCTTTCTGGTAAGATCTGTCTGCCCAAGGAGGCAGGCCTTGGCCCCTG
CCGAGGTGTACTTTATCCTCCTGGGAGTTTGGAAAGTTGAGGACCCCCTTCCAGCAACCCCCCT
CCAGCTAGGAGAGGGGGGCCAGACGAGGTAATGAGTAACCAGCCTGGAATGTTGGAAGATAAGA
GGCCCAGGTGGGACCCTTATCTCCAGTTCCTGGAACACCCCTGCCCCAGGTGCCAGGAACCAGT
ATCTGCCCCATAATCCCATGGGGCAGCTTGGCAGGTGCTCAGATCACCCGGAGAGAGACAGGTT
CCCATGCACAGGGTGGCTCAGGATCACCTCCCGTCCTCTTCTCTTGGCAATGCTATACCCTGTG
CCTCAGTTTCCTCCCCTGCACCAAAGACGGGGAGCATTAACACTTATGGAAAGTGCTAACAGTT
CTTGCTGTGGAAATAATAAAAATGGATTCTTTTA

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Protein Sequences


Protein RefSeqs	NP_001073168	(Get FASTA)	NCBI Sequence Viewer
	XP_017450354	(Get FASTA)	NCBI Sequence Viewer
	XP_017450356	(Get FASTA)	NCBI Sequence Viewer
	XP_017450357	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A1A5P0	(Get FASTA)	NCBI Sequence Viewer
	AAI28745	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011269.2
	ENSRNOP00000078201.1
	ENSRNOP00055042344
	ENSRNOP00060029767

RefSeq Acc Id:

NP_001073168 ⟸ NM_001079700

- UniProtKB:

A1A5P0 (UniProtKB/Swiss-Prot), A0A8I5ZKG9 (UniProtKB/TrEMBL)

- Sequence:

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MPGPQGGTGAPSMSLGKLSPVGWVPSSHGKRRLTADMISPPLGDFRHTMHVGRGGDVFGDTSFL
SNHGGRSGNTHRSPRSFLARKLQQVRRVGVPPRRMASPAATSPAPPPISPIIKNAISLPQLNQA
TYDSLVVSKLSFDSTPASSTDGRSGYGLESGFCTISRLPRVEKHSSRDRDHDRDPDHSQDREQS
SSPSEPNPNPELRRSDSLLSFRFDLDLGPSLLSELLGVMSLSEAPAANPPAPAANPAPTAKPPA
DAVTTLDTVTSLPAPTASSPSSGRFPNGVTAVLGPVAEVKASPVGEGPQVPSKMAFDRRGASWG
AIRASRHYTEMDARRELAGVLPQVHGSWESLNEEWSAPPASSRAPVPSTVQANAFEFADADEDD
EVKV

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RefSeq Acc Id:	XP_017450357 ⟸ XM_017594868
- Peptide Label:	isoform X1
- UniProtKB:	A1A5P0 (UniProtKB/Swiss-Prot), A0A8I5ZKG9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGPQGGTGAPSMSLGKLSPVGWVPSSHGKRRLTADMISPPLGDFRHTMHVGRGGDVFGDTSFL SNHGGRSGNTHRSPRSFLARKLQQVRRVGVPPRRMASPAATSPAPPPISPIIKNAISLPQLNQA TYDSLVVSKLSFDSTPASSTDGRSGYGLESGFCTISRLPRVEKHSSRDRDHDRDPDHSQDREQS SSPSEPNPNPELRRSDSLLSFRFDLDLGPSLLSELLGVMSLSEAPAANPPAPAANPAPTAKPPA DAVTTLDTVTSLPAPTASSPSSGRFPNGVTAVLGPVAEVKASPVGEGPQVPSKMAFDRRGASWG AIRASRHYTEMDARRELAGVLPQVHGSWESLNEEWSAPPASSRAPVPSTVQANAFEFADADEDD EVKV hide sequence

RefSeq Acc Id:	XP_017450354 ⟸ XM_017594865
- Peptide Label:	isoform X1
- UniProtKB:	A1A5P0 (UniProtKB/Swiss-Prot), A0A8I5ZKG9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGPQGGTGAPSMSLGKLSPVGWVPSSHGKRRLTADMISPPLGDFRHTMHVGRGGDVFGDTSFL SNHGGRSGNTHRSPRSFLARKLQQVRRVGVPPRRMASPAATSPAPPPISPIIKNAISLPQLNQA TYDSLVVSKLSFDSTPASSTDGRSGYGLESGFCTISRLPRVEKHSSRDRDHDRDPDHSQDREQS SSPSEPNPNPELRRSDSLLSFRFDLDLGPSLLSELLGVMSLSEAPAANPPAPAANPAPTAKPPA DAVTTLDTVTSLPAPTASSPSSGRFPNGVTAVLGPVAEVKASPVGEGPQVPSKMAFDRRGASWG AIRASRHYTEMDARRELAGVLPQVHGSWESLNEEWSAPPASSRAPVPSTVQANAFEFADADEDD EVKV hide sequence

RefSeq Acc Id:	XP_017450356 ⟸ XM_017594867
- Peptide Label:	isoform X1
- UniProtKB:	A1A5P0 (UniProtKB/Swiss-Prot), A0A8I5ZKG9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGPQGGTGAPSMSLGKLSPVGWVPSSHGKRRLTADMISPPLGDFRHTMHVGRGGDVFGDTSFL SNHGGRSGNTHRSPRSFLARKLQQVRRVGVPPRRMASPAATSPAPPPISPIIKNAISLPQLNQA TYDSLVVSKLSFDSTPASSTDGRSGYGLESGFCTISRLPRVEKHSSRDRDHDRDPDHSQDREQS SSPSEPNPNPELRRSDSLLSFRFDLDLGPSLLSELLGVMSLSEAPAANPPAPAANPAPTAKPPA DAVTTLDTVTSLPAPTASSPSSGRFPNGVTAVLGPVAEVKASPVGEGPQVPSKMAFDRRGASWG AIRASRHYTEMDARRELAGVLPQVHGSWESLNEEWSAPPASSRAPVPSTVQANAFEFADADEDD EVKV hide sequence

RefSeq Acc Id:

ENSRNOP00000011269 ⟸ ENSRNOT00000011270

RefSeq Acc Id:

ENSRNOP00000078201 ⟸ ENSRNOT00000101077

Protein Domains

CRIB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A1A5P0-F1-model_v2	AlphaFold	A1A5P0	1-388	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311131	AgrOrtholog
BioCyc Gene	G2FUF-32797	BioCyc
Ensembl Genes	ENSRNOG00000008517	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055029655	UniProtKB/Swiss-Prot
	ENSRNOG00060020877	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000011270.5	UniProtKB/Swiss-Prot
	ENSRNOT00000101077.1	UniProtKB/TrEMBL
	ENSRNOT00055051377	UniProtKB/Swiss-Prot
	ENSRNOT00060036196	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7097485	IMAGE-MGC_LOAD
InterPro	Cdc42_effect	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CRIB_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:315121	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:156690	IMAGE-MGC_LOAD
NCBI Gene	315121	ENTREZGENE
PANTHER	CDC42 EFFECTOR PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CDC42 EFFECTOR PROTEIN BORG	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	BORG_CEP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cdc42ep1	PhenoGen
PROSITE	CRIB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008517	RatGTEx
	ENSRNOG00055029655	RatGTEx
	ENSRNOG00060020877	RatGTEx
SMART	PBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZKG9	ENTREZGENE, UniProtKB/TrEMBL
	A1A5P0	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-13	Cdc42ep1	CDC42 effector protein 1	Cdc42ep1	CDC42 effector protein (Rho GTPase binding) 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Cdc42ep1	CDC42 effector protein (Rho GTPase binding) 1	Cdc42ep1_predicted	CDC42 effector protein (Rho GTPase binding) 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cdc42ep1_predicted	CDC42 effector protein (Rho GTPase binding) 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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