Nudcd1 (NudC domain containing 1) - Rat Genome Database

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Gene: Nudcd1 (NudC domain containing 1) Rattus norvegicus
Analyze
Symbol: Nudcd1
Name: NudC domain containing 1
RGD ID: 1310624
Description: Predicted to be located in cytosol and nucleoplasm. Orthologous to human NUDCD1 (NudC domain containing 1); INTERACTS WITH (+)-schisandrin B; bisphenol A; Cuprizon.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362906; nudC domain-containing protein 1; RGD1310624; similar to chronic myelogenous leukemia tumor antigen 66
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,436,035 - 77,480,651 (-)NCBIGRCr8
mRatBN7.2775,550,650 - 75,595,976 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,550,346 - 75,595,900 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx777,395,980 - 77,440,519 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0779,598,471 - 79,643,010 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0779,475,982 - 79,520,489 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0783,302,778 - 83,348,534 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,301,941 - 83,348,487 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0783,316,885 - 83,362,628 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4780,255,081 - 80,299,620 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1780,276,134 - 80,320,284 (-)NCBI
Celera772,536,058 - 72,579,962 (-)NCBICelera
Cytogenetic Map7q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Nudcd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,436,035 - 77,480,651 (-)NCBIGRCr8
mRatBN7.2775,550,650 - 75,595,976 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,550,346 - 75,595,900 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx777,395,980 - 77,440,519 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0779,598,471 - 79,643,010 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0779,475,982 - 79,520,489 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0783,302,778 - 83,348,534 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,301,941 - 83,348,487 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0783,316,885 - 83,362,628 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4780,255,081 - 80,299,620 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1780,276,134 - 80,320,284 (-)NCBI
Celera772,536,058 - 72,579,962 (-)NCBICelera
Cytogenetic Map7q31NCBI
NUDCD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388109,240,919 - 109,334,087 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8109,240,919 - 109,334,121 (-)EnsemblGRCh38hg38GRCh38
GRCh378110,253,148 - 110,346,316 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368110,322,324 - 110,415,491 (-)NCBINCBI36Build 36hg18NCBI36
Build 348110,322,324 - 110,415,491NCBI
Celera8106,440,850 - 106,534,040 (-)NCBICelera
Cytogenetic Map8q23.1NCBI
HuRef8105,575,211 - 105,668,355 (-)NCBIHuRef
CHM1_18110,293,071 - 110,386,598 (-)NCBICHM1_1
T2T-CHM13v2.08110,369,461 - 110,462,629 (-)NCBIT2T-CHM13v2.0
Nudcd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391544,238,623 - 44,291,703 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1544,236,559 - 44,291,703 (-)EnsemblGRCm39 Ensembl
GRCm381544,375,227 - 44,428,307 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1544,373,163 - 44,428,307 (-)EnsemblGRCm38mm10GRCm38
MGSCv371544,206,773 - 44,259,853 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361544,205,305 - 44,257,962 (-)NCBIMGSCv36mm8
Celera1544,831,733 - 44,891,316 (-)NCBICelera
Cytogenetic Map15B3.2NCBI
cM Map1516.91NCBI
Nudcd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541716,686,296 - 16,750,427 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541716,688,629 - 16,750,427 (-)NCBIChiLan1.0ChiLan1.0
NUDCD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27126,619,208 - 126,710,987 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18102,140,805 - 102,231,956 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08105,893,784 - 105,984,995 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18108,038,659 - 108,129,797 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8108,038,659 - 108,129,797 (-)Ensemblpanpan1.1panPan2
NUDCD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1139,815,394 - 9,895,410 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl139,815,957 - 9,895,359 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha139,799,805 - 9,886,375 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01310,096,853 - 10,177,290 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1310,096,853 - 10,177,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1139,838,631 - 9,918,869 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0139,955,853 - 10,035,820 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01310,045,303 - 10,125,384 (-)NCBIUU_Cfam_GSD_1.0
Nudcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530328,223,653 - 28,283,414 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647035,649,742 - 35,711,985 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647035,649,752 - 35,709,569 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUDCD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl428,203,743 - 28,331,531 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1428,203,716 - 28,319,944 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2430,675,395 - 30,748,179 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUDCD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18103,952,873 - 104,044,592 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8103,951,207 - 104,044,468 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603936,531,352 - 36,623,030 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nudcd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247638,350,120 - 8,423,418 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247638,349,713 - 8,423,540 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nudcd1
234 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:138
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000006685
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat

Markers in Region
AA801046  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2775,550,786 - 75,550,943 (+)MAPPERmRatBN7.2
Rnor_6.0783,302,915 - 83,303,071NCBIRnor6.0
Rnor_5.0783,317,022 - 83,317,178UniSTSRnor5.0
RGSC_v3.4780,254,503 - 80,254,659UniSTSRGSC3.4
Celera772,535,480 - 72,535,636UniSTS
RH 3.4 Map7513.5UniSTS
Cytogenetic Map7q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 20 30 16 14 16 74 22 40 4
Low 3 23 27 25 5 25 8 11 13 1 7 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000006685   ⟹   ENSRNOP00000006685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl775,550,346 - 75,595,859 (-)Ensembl
Rnor_6.0 Ensembl783,301,941 - 83,348,487 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102595   ⟹   ENSRNOP00000091595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl775,551,406 - 75,595,900 (-)Ensembl
RefSeq Acc Id: NM_001130561   ⟹   NP_001124033
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,480,575 (-)NCBI
mRatBN7.2775,551,365 - 75,595,903 (-)NCBI
Rnor_6.0783,303,493 - 83,348,430 (-)NCBI
Rnor_5.0783,316,885 - 83,362,628 (-)NCBI
RGSC_v3.4780,255,081 - 80,299,620 (-)RGD
Celera772,536,058 - 72,579,962 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241614   ⟹   XP_006241676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,480,651 (-)NCBI
mRatBN7.2775,550,650 - 75,595,976 (-)NCBI
Rnor_6.0783,302,778 - 83,348,534 (-)NCBI
Rnor_5.0783,316,885 - 83,362,628 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079515   ⟹   XP_038935443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,465,892 (-)NCBI
mRatBN7.2775,550,650 - 75,581,222 (-)NCBI
RefSeq Acc Id: XM_063263837   ⟹   XP_063119907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,467,917 (-)NCBI
RefSeq Acc Id: XM_063263838   ⟹   XP_063119908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,467,917 (-)NCBI
RefSeq Acc Id: XM_063263840   ⟹   XP_063119910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,465,892 (-)NCBI
RefSeq Acc Id: XM_063263841   ⟹   XP_063119911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,465,892 (-)NCBI
RefSeq Acc Id: XM_063263842   ⟹   XP_063119912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,465,892 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001124033   ⟸   NM_001130561
- UniProtKB: B5DFD1 (UniProtKB/TrEMBL),   F7F163 (UniProtKB/TrEMBL),   A0A9K3Y8F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241676   ⟸   XM_006241614
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AGF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006685   ⟸   ENSRNOT00000006685
RefSeq Acc Id: XP_038935443   ⟸   XM_039079515
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000091595   ⟸   ENSRNOT00000102595
RefSeq Acc Id: XP_063119908   ⟸   XM_063263838
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063119907   ⟸   XM_063263837
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063119911   ⟸   XM_063263841
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063119912   ⟸   XM_063263842
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063119910   ⟸   XM_063263840
- Peptide Label: isoform X5
Protein Domains
CS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7F163-F1-model_v2 AlphaFold F7F163 1-579 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695317
Promoter ID:EPDNEW_R5842
Type:initiation region
Name:Nudcd1_1
Description:NudC domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0783,348,435 - 83,348,495EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310624 AgrOrtholog
BioCyc Gene G2FUF-33481 BioCyc
Ensembl Genes ENSRNOG00000024929 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006685 ENTREZGENE
  ENSRNOT00000006685.6 UniProtKB/TrEMBL
  ENSRNOT00000102595.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.790 UniProtKB/TrEMBL
InterPro CS-like_domain UniProtKB/TrEMBL
  HSP20-like_chaperone UniProtKB/TrEMBL
  NUDCD1 UniProtKB/TrEMBL
KEGG Report rno:362906 UniProtKB/TrEMBL
NCBI Gene 362906 ENTREZGENE
PANTHER NUDC DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR21664 UniProtKB/TrEMBL
Pfam PF04969 UniProtKB/TrEMBL
PhenoGen Nudcd1 PhenoGen
PROSITE PS51203 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024929 RatGTEx
Superfamily-SCOP HSP20_chap UniProtKB/TrEMBL
UniProt A0A8I6AGF4 ENTREZGENE, UniProtKB/TrEMBL
  A0A9K3Y8F7 ENTREZGENE, UniProtKB/TrEMBL
  B5DFD1 ENTREZGENE, UniProtKB/TrEMBL
  F7F163 ENTREZGENE
UniProt Secondary F7F163 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nudcd1  NudC domain containing 1   Nudcd1_predicted  NudC domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Nudcd1_predicted  NudC domain containing 1 (predicted)  RGD1310624_predicted  similar to chronic myelogenous leukemia tumor antigen 66 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1310624_predicted  similar to chronic myelogenous leukemia tumor antigen 66 (predicted)  LOC362906_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362906_predicted  similar to chronic myelogenous leukemia tumor antigen 66 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL