Senp1 (SUMO specific peptidase 1) - Rat Genome Database

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Gene: Senp1 (SUMO specific peptidase 1) Rattus norvegicus
Analyze
Symbol: Senp1
Name: SUMO specific peptidase 1
RGD ID: 1310275
Description: Predicted to enable SUMO-specific endopeptidase activity and deSUMOylase activity. Predicted to be involved in apoptotic signaling pathway; protein desumoylation; and regulation of mRNA stability. Predicted to act upstream of or within negative regulation of proteasomal ubiquitin-dependent protein catabolic process; positive regulation of transcription by RNA polymerase II; and regulation of definitive erythrocyte differentiation. Predicted to be located in focal adhesion; nuclear membrane; and nucleoplasm. Predicted to be active in nucleus. Orthologous to human SENP1 (SUMO specific peptidase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; thioacetamide.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103692995; LOC300193; sentrin-specific protease 1; sentrin-specific protease 1-like; SUMO1/sentrin specific peptidase 1; SUMO1/sentrin specific protease 1; Sumo1/sentrin/SMT3 specific peptidase 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,042,237 - 131,105,826 (-)NCBIGRCr8
mRatBN7.27129,163,173 - 129,226,766 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,165,774 - 129,221,598 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07139,626,444 - 139,684,587 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,630,515 - 139,675,245 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,523,690 - 139,542,461 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07138,763,261 - 138,811,289 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47136,746,791 - 136,808,933 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17136,824,107 - 136,895,190 (-)NCBI
Celera7125,653,981 - 125,702,739 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Phosphorylation and SUMOylation of CRMP2 regulate the formation and maturation of dendritic spines. Zhang J, etal., Brain Res Bull. 2018 May;139:21-30. doi: 10.1016/j.brainresbull.2018.02.004. Epub 2018 Feb 6.
Additional References at PubMed
PMID:1087798   PMID:15767674   PMID:15923632   PMID:16608850   PMID:17591783   PMID:17981124   PMID:20233849   PMID:21965678   PMID:22582390   PMID:22737911   PMID:22942423   PMID:25082844  
PMID:25236484   PMID:26935971   PMID:29128362   PMID:30387808   PMID:33746578   PMID:37862053  


Genomics

Comparative Map Data
Senp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,042,237 - 131,105,826 (-)NCBIGRCr8
mRatBN7.27129,163,173 - 129,226,766 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,165,774 - 129,221,598 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07139,626,444 - 139,684,587 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,630,515 - 139,675,245 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,523,690 - 139,542,461 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07138,763,261 - 138,811,289 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47136,746,791 - 136,808,933 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17136,824,107 - 136,895,190 (-)NCBI
Celera7125,653,981 - 125,702,739 (-)NCBICelera
Cytogenetic Map7q36NCBI
SENP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,042,897 - 48,106,079 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,039,784 - 48,106,079 (-)EnsemblGRCh38hg38GRCh38
GRCh371248,436,680 - 48,499,862 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,723,024 - 46,785,908 (-)NCBINCBI36Build 36hg18NCBI36
Build 341246,723,023 - 46,785,908NCBI
Celera1247,234,386 - 47,297,145 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1245,468,507 - 45,531,571 (-)NCBIHuRef
CHM1_11248,402,545 - 48,465,523 (-)NCBICHM1_1
T2T-CHM13v2.01248,004,645 - 48,067,418 (-)NCBIT2T-CHM13v2.0
Senp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391597,936,625 - 97,991,625 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1597,936,625 - 97,991,625 (-)EnsemblGRCm39 Ensembl
GRCm381598,038,744 - 98,093,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,038,744 - 98,093,744 (-)EnsemblGRCm38mm10GRCm38
MGSCv371597,871,660 - 97,923,836 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361597,869,450 - 97,921,344 (-)NCBIMGSCv36mm8
Celera15100,168,159 - 100,220,260 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.04NCBI
Senp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555006,926,548 - 6,979,230 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555006,924,445 - 6,978,482 (-)NCBIChiLan1.0ChiLan1.0
SENP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21046,058,721 - 46,124,222 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11246,055,479 - 46,120,980 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01240,624,200 - 40,689,837 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11241,499,046 - 41,561,097 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1241,507,348 - 41,558,969 (+)Ensemblpanpan1.1panPan2
SENP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,664,750 - 6,719,257 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,664,818 - 6,714,479 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2739,586,894 - 39,641,870 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0276,732,302 - 6,787,340 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl276,732,512 - 6,782,146 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1276,669,783 - 6,724,793 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0276,704,515 - 6,759,712 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02739,875,502 - 39,930,468 (-)NCBIUU_Cfam_GSD_1.0
Senp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494567,175,011 - 67,229,945 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365125,937,814 - 5,989,855 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365125,932,594 - 5,989,819 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SENP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl578,423,383 - 78,476,195 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1578,419,849 - 78,476,315 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2581,597,603 - 81,650,646 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SENP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11144,272,371 - 44,334,787 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037202,045,058 - 202,109,387 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Senp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248164,179,890 - 4,232,312 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248164,173,321 - 4,231,711 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Senp1
189 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:192
Count of miRNA genes:145
Interacting mature miRNAs:159
Transcripts:ENSRNOT00000030943
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 22 19 12 18 12 47 22 37 10
Low 2 20 38 29 1 29 8 11 27 13 4 1 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008765844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000030943   ⟹   ENSRNOP00000031127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,165,774 - 129,212,148 (-)Ensembl
Rnor_6.0 Ensembl7139,630,515 - 139,675,245 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080056   ⟹   ENSRNOP00000069472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,165,774 - 129,221,598 (-)Ensembl
Rnor_6.0 Ensembl7139,630,515 - 139,649,286 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089425   ⟹   ENSRNOP00000071957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,166,214 - 129,221,356 (-)Ensembl
Rnor_6.0 Ensembl7139,523,690 - 139,542,461 (-)Ensembl
RefSeq Acc Id: XM_008765844   ⟹   XP_008764066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,081 (-)NCBI
mRatBN7.27129,163,173 - 129,221,502 (-)NCBI
Rnor_6.07139,626,444 - 139,684,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765848   ⟹   XP_008764070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,708 (-)NCBI
mRatBN7.27129,163,177 - 129,221,647 (-)NCBI
Rnor_6.07139,626,444 - 139,684,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765849   ⟹   XP_008764071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,081 (-)NCBI
mRatBN7.27129,163,173 - 129,221,502 (-)NCBI
Rnor_6.07139,626,444 - 139,684,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765850   ⟹   XP_008764072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,708 (-)NCBI
mRatBN7.27129,163,177 - 129,221,647 (-)NCBI
Rnor_6.07139,626,444 - 139,684,584 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595314   ⟹   XP_017450803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,240 (-)NCBI
mRatBN7.27129,163,173 - 129,221,502 (-)NCBI
Rnor_6.07139,626,444 - 139,684,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595315   ⟹   XP_017450804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,081 (-)NCBI
mRatBN7.27129,163,173 - 129,221,502 (-)NCBI
Rnor_6.07139,626,444 - 139,684,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595316   ⟹   XP_017450805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,081 (-)NCBI
mRatBN7.27129,163,173 - 129,221,502 (-)NCBI
Rnor_6.07139,626,444 - 139,684,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595317   ⟹   XP_017450806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,708 (-)NCBI
mRatBN7.27129,163,177 - 129,221,647 (-)NCBI
Rnor_6.07139,626,444 - 139,684,587 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080356   ⟹   XP_038936284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,236 (-)NCBI
mRatBN7.27129,163,173 - 129,221,502 (-)NCBI
RefSeq Acc Id: XM_039080357   ⟹   XP_038936285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,139 (-)NCBI
mRatBN7.27129,163,173 - 129,221,502 (-)NCBI
RefSeq Acc Id: XM_039080358   ⟹   XP_038936286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,105,826 (-)NCBI
mRatBN7.27129,163,173 - 129,226,766 (-)NCBI
RefSeq Acc Id: XM_039080359   ⟹   XP_038936287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,102,325 (-)NCBI
mRatBN7.27129,163,173 - 129,223,264 (-)NCBI
RefSeq Acc Id: XM_039080360   ⟹   XP_038936288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,069,963 (-)NCBI
mRatBN7.27129,163,173 - 129,190,892 (-)NCBI
RefSeq Acc Id: XM_039080361   ⟹   XP_038936289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,065,147 - 131,100,081 (-)NCBI
mRatBN7.27129,186,084 - 129,221,502 (-)NCBI
RefSeq Acc Id: XM_063264358   ⟹   XP_063120428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,240 (-)NCBI
RefSeq Acc Id: XM_063264359   ⟹   XP_063120429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,708 (-)NCBI
RefSeq Acc Id: XM_063264360   ⟹   XP_063120430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,240 (-)NCBI
RefSeq Acc Id: XM_063264361   ⟹   XP_063120431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,708 (-)NCBI
RefSeq Acc Id: XM_063264362   ⟹   XP_063120432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,240 (-)NCBI
RefSeq Acc Id: XM_063264363   ⟹   XP_063120433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,100,708 (-)NCBI
RefSeq Acc Id: XM_063264364   ⟹   XP_063120434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,090,953 (-)NCBI
RefSeq Acc Id: XM_063264365   ⟹   XP_063120435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,042,237 - 131,088,565 (-)NCBI
RefSeq Acc Id: XR_005487405
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,063,178 - 131,100,081 (-)NCBI
mRatBN7.27129,186,000 - 129,221,502 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008764072   ⟸   XM_008765850
- Peptide Label: isoform X14
- UniProtKB: A0A0G2JVG1 (UniProtKB/TrEMBL),   F1LVT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764070   ⟸   XM_008765848
- Peptide Label: isoform X9
- UniProtKB: F1LVT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764071   ⟸   XM_008765849
- Peptide Label: isoform X11
- UniProtKB: F1LVT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764066   ⟸   XM_008765844
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K1R8 (UniProtKB/TrEMBL),   F1LVT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450806   ⟸   XM_017595317
- Peptide Label: isoform X7
- UniProtKB: F1LVT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450803   ⟸   XM_017595314
- Peptide Label: isoform X2
- UniProtKB: F1LVT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450804   ⟸   XM_017595315
- Peptide Label: isoform X3
- UniProtKB: F1LVT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450805   ⟸   XM_017595316
- Peptide Label: isoform X6
- UniProtKB: F1LVT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069472   ⟸   ENSRNOT00000080056
RefSeq Acc Id: ENSRNOP00000031127   ⟸   ENSRNOT00000030943
RefSeq Acc Id: XP_038936286   ⟸   XM_039080358
- Peptide Label: isoform X7
- UniProtKB: F1LVT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936287   ⟸   XM_039080359
- Peptide Label: isoform X7
- UniProtKB: F1LVT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936284   ⟸   XM_039080356
- Peptide Label: isoform X1
- UniProtKB: F1LVT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936285   ⟸   XM_039080357
- Peptide Label: isoform X7
- UniProtKB: F1LVT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936288   ⟸   XM_039080360
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038936289   ⟸   XM_039080361
- Peptide Label: isoform X17
RefSeq Acc Id: ENSRNOP00000071957   ⟸   ENSRNOT00000089425
RefSeq Acc Id: XP_063120433   ⟸   XM_063264363
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063120431   ⟸   XM_063264361
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063120429   ⟸   XM_063264359
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063120432   ⟸   XM_063264362
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063120430   ⟸   XM_063264360
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063120428   ⟸   XM_063264358
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063120434   ⟸   XM_063264364
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063120435   ⟸   XM_063264365
- Peptide Label: isoform X16
Protein Domains
Ubiquitin-like protease family profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LVT6-F1-model_v2 AlphaFold F1LVT6 1-640 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310275 AgrOrtholog
BioCyc Gene G2FUF-32163 BioCyc
Ensembl Genes ENSRNOG00000022260 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000054297 Ensembl
Ensembl Transcript ENSRNOT00000030943.7 UniProtKB/TrEMBL
  ENSRNOT00000080056.2 UniProtKB/TrEMBL
  ENSRNOT00000089425.2 UniProtKB/TrEMBL
InterPro Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C48 UniProtKB/TrEMBL
KEGG Report rno:300193 UniProtKB/TrEMBL
NCBI Gene 300193 ENTREZGENE
PANTHER SENTRIN-SPECIFIC PROTEASE 1 UniProtKB/TrEMBL
  SENTRIN/SUMO-SPECIFIC PROTEASE UniProtKB/TrEMBL
Pfam Peptidase_C48 UniProtKB/TrEMBL
PhenoGen Senp1 PhenoGen
PROSITE ULP_PROTEASE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022260 RatGTEx
  ENSRNOG00000054297 RatGTEx
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A0G2JVG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K1R8 ENTREZGENE, UniProtKB/TrEMBL
  F1LVT6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Senp1  SUMO specific peptidase 1  LOC103692995  sentrin-specific protease 1-like  Data merged from RGD:9174101 737654 PROVISIONAL
2018-03-01 Senp1  SUMO specific peptidase 1  Senp1  SUMO1/sentrin specific peptidase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103692995  sentrin-specific protease 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 Senp1  SUMO1/sentrin specific peptidase 1  Senp1  Sumo1/sentrin/SMT3 specific peptidase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-12-15 Senp1  Sumo1/sentrin/SMT3 specific peptidase 1  Senp1  Sumo1/sentrin/Smt3 specific peptidase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-12-15 Senp1  Sumo1/sentrin/SMT3 specific peptidase 1  Senp1  SUMO1/sentrin specific peptidase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-12-15 Senp1  Sumo1/sentrin/Smt3 specific peptidase 1  Senp1  SUMO1/sentrin specific peptidase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Senp1  SUMO1/sentrin specific peptidase 1  Senp1_predicted  SUMO1/sentrin specific protease 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Senp1_predicted  SUMO1/sentrin specific protease 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED