Tmem179 (transmembrane protein 179)

Gene: Tmem179 (transmembrane protein 179) Rattus norvegicus

Analyze

Symbol:

Tmem179

Name:

transmembrane protein 179

RGD ID:

1310269

Description:

Predicted to be located in membrane. Orthologous to human TMEM179 (transmembrane protein 179); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical LOC314472; hypothetical protein LOC314472; LOC314472; RGD1310269; uncharacterized protein LOC314472

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM179 (transmembrane protein 179)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Tmem179 (transmembrane protein 179)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem179 (transmembrane protein 179)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM179 (transmembrane protein 179)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM179 (transmembrane protein 179)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem179 (transmembrane protein 179)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM179 (transmembrane protein 179)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM179 (transmembrane protein 179)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem179 (transmembrane protein 179)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PEX7 (peroxisomal biogenesis factor 7)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Tmem179 (transmembrane protein 179)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM179 (transmembrane protein 179)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem179aa (transmembrane protein 179a, genome duplicate A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG13603	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tmem179	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	137,390,422 - 137,401,438 (-)	NCBI		GRCr8
mRatBN7.2	6	131,569,289 - 131,580,413 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	131,569,290 - 131,580,305 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	131,738,580 - 131,749,562 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	132,035,550 - 132,046,524 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	131,397,899 - 131,408,911 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	137,073,684 - 137,084,739 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	137,073,685 - 137,084,739 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	146,081,900 - 146,092,800 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	137,339,658 - 137,350,559 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	136,944,771 - 137,374,966 (-)	NCBI
Celera	6	129,117,221 - 129,127,935 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease axonal type 2O (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

amitrole (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

clobetasol (ISO)

ethanol (ISO)

ethylparaben (ISO)

furan (EXP)

gentamycin (EXP)

GW 4064 (ISO)

methimazole (EXP)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

sulfadimethoxine (EXP)

tebuconazole (ISO)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Tmem179
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	137,390,422 - 137,401,438 (-)	NCBI		GRCr8
mRatBN7.2	6	131,569,289 - 131,580,413 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	131,569,290 - 131,580,305 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	131,738,580 - 131,749,562 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	132,035,550 - 132,046,524 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	131,397,899 - 131,408,911 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	137,073,684 - 137,084,739 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	137,073,685 - 137,084,739 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	146,081,900 - 146,092,800 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	137,339,658 - 137,350,559 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	136,944,771 - 137,374,966 (-)	NCBI
Celera	6	129,117,221 - 129,127,935 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

TMEM179
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	104,590,864 - 104,604,772 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	104,474,678 - 104,605,647 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	105,057,201 - 105,071,109 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	104,131,465 - 104,142,142 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	85,116,467 - 85,127,144 (-)	NCBI		Celera
Cytogenetic Map	14	q32.33	NCBI
HuRef	14	85,256,892 - 85,263,031 (-)	NCBI		HuRef
CHM1_1	14	104,997,934 - 105,008,611 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	98,833,645 - 98,847,553 (-)	NCBI		T2T-CHM13v2.0

Tmem179
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	112,466,618 - 112,477,594 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	112,466,623 - 112,483,181 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	112,500,184 - 112,511,160 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	112,500,189 - 112,516,747 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	113,738,395 - 113,749,371 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	112,947,998 - 112,958,980 (-)	NCBI		MGSCv36	mm8
MGSCv36	12	106,777,537 - 106,788,564 (-)	NCBI		MGSCv36	mm8
Celera	12	113,709,236 - 113,720,225 (-)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	61.2	NCBI

Tmem179
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955538	3,083,815 - 3,093,843 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955538	3,083,815 - 3,093,843 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM179
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	105,775,009 - 105,787,702 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	104,991,518 - 105,004,212 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	85,241,752 - 85,254,473 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	105,034,292 - 105,048,927 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	105,034,292 - 105,048,932 (-)	Ensembl	panpan1.1		panPan2

TMEM179
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	72,177,054 - 72,188,324 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	72,179,141 - 72,188,917 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	71,684,182 - 71,702,232 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	72,453,248 - 72,471,387 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	72,453,250 - 72,464,556 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	72,142,070 - 72,151,068 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	72,179,187 - 72,197,260 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	72,578,600 - 72,596,714 (-)	NCBI		UU_Cfam_GSD_1.0

Tmem179
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	1,941,024 - 1,951,776 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936621	770,123 - 780,763 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936621	770,007 - 780,735 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM179
(Sus scrofa - pig)

No map positions available.

TMEM179
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	82,526,329 - 82,540,086 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	82,527,205 - 82,539,165 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	69,885,420 - 69,936,480 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem179
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	627,061 - 639,095 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	627,163 - 636,636 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tmem179
66 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	244
Count of miRNA genes:	158
Interacting mature miRNAs:	193
Transcripts:	ENSRNOT00000060943
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	94968928	137848904	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	94968928	139968928	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	96833997	140994061	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	100364669	140994061	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	100671796	132340886	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	105156861	140994061	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	106752656	132339866	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	112636280	140994061	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	122549046	137801795	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	122549046	140286318	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	122549046	140994061	Rat
2312560	Pur20	Proteinuria QTL 20	2.1	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	125628133	137801795	Rat

Markers in Region

RH132256

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	131,569,319 - 131,569,509 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	137,073,715 - 137,073,904	NCBI	Rnor6.0
Rnor_5.0	6	146,081,931 - 146,082,120	UniSTS	Rnor5.0
RGSC_v3.4	6	137,339,689 - 137,339,878	UniSTS	RGSC3.4
Celera	6	129,117,252 - 129,117,441	UniSTS
RH 3.4 Map	6	782.81	UniSTS
Cytogenetic Map	6	q32	UniSTS

BI283648

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	131,572,153 - 131,572,312 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	137,076,549 - 137,076,707	NCBI	Rnor6.0
Rnor_5.0	6	146,084,765 - 146,084,923	UniSTS	Rnor5.0
RGSC_v3.4	6	137,342,523 - 137,342,681	UniSTS	RGSC3.4
Celera	6	129,120,074 - 129,120,232	UniSTS
RH 3.4 Map	6	784.2	UniSTS
Cytogenetic Map	6	q32	UniSTS

RH137536

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	131,580,703 - 131,580,825 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	137,085,138 - 137,085,259	NCBI	Rnor6.0
Rnor_5.0	6	146,093,199 - 146,093,320	UniSTS	Rnor5.0
RGSC_v3.4	6	137,350,958 - 137,351,079	UniSTS	RGSC3.4
Celera	6	129,128,334 - 129,128,455	UniSTS
Cytogenetic Map	6	q32	UniSTS

AI231774

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	131,568,911 - 131,569,124 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	137,073,307 - 137,073,519	NCBI	Rnor6.0
Rnor_5.0	6	146,081,523 - 146,081,735	UniSTS	Rnor5.0
RGSC_v3.4	6	137,339,281 - 137,339,493	UniSTS	RGSC3.4
Celera	6	129,116,844 - 129,117,056	UniSTS
RH 3.4 Map	6	783.0	UniSTS
Cytogenetic Map	6	q32	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		23	9		2				60		1
Low	2	20	10	3	12	3	7	7	14	18	36	9	7
Below cutoff	1		17	17	5	17	1	4		15	4	2	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001126280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC160847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000060943 ⟹ ENSRNOP00000057665

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	131,569,290 - 131,580,305 (-)	Ensembl
Rnor_6.0 Ensembl	6	137,073,685 - 137,084,739 (-)	Ensembl

RefSeq Acc Id:

NM_001126280 ⟹ NP_001119752

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	137,390,422 - 137,401,438 (-)	NCBI
mRatBN7.2	6	131,569,289 - 131,580,305 (-)	NCBI
Rnor_6.0	6	137,073,684 - 137,084,739 (-)	NCBI
Rnor_5.0	6	146,081,900 - 146,092,800 (-)	NCBI
RGSC_v3.4	6	137,339,658 - 137,350,559 (-)	RGD
Celera	6	129,117,221 - 129,127,935 (-)	RGD

Sequence:

show sequence

CGCTGCTCGGGCCAGGCCTGCGCGGCGCCGGAGACTCGCGGCCCGGCTCCTGGAGTGGTCGCAT
CTCCGACCGGTGGCCTTCTCGGCGGCTCCTCTCATCCTGGCACCACCATGGCGCTCAACAATTT
CCTCTTCGCGCAGTGCGTCTGCTACTTTTTGGCCTTCTTGTTCAGCTTCGTGGTGGTGGTGCCA
TTGTCCGAGAATGGCCACGACTTTCGTGGTCGCTGCCTACTCTTTACCGAGGGTATGTGGCTGA
GTGCCAACCTGACGATGCAGGGGCGGGAGCGCTTCACGGTGCAGGAGTGGGGCCCACCGGCTGC
CTGCCGCTTCAGCCTGCTCGCCAGCCTCCTGTCACTGCTGCTGGCCGCTGCGCACGCATGGCGC
ACACTCTTCTTCCTCTGCAAGGGACACGAGGGCTCCTTCTTCTACGCCTTCCTGAACCTCCTGG
TCAGTGCCTTTGTGGTCTTCCTAGTCTTCATTGCCAGCACCATCGTGAGTGTGGGCTTCACTAT
GTGGTGTGACACCATCACTGAGAAGGGCTCTGCACCTCACAGCTGCGAGGAGTTCCAGGAAACG
GACTTGGAGCTGAACGTGGACAACTCTGCCTTCTACCATCAGTTTGCAATTGCCCAGTTTGGAC
TGCGGGCCTCCTGGCTGGCCTGGCTGGCGATCACCACTCTGGCTTTCCTGAAGGTTTATCACAA
CTACCGCCAGGAGGACCTGTTGGACAGCCTGGTTCACGAGAAGGAGCTTCTGTTGGCCAGACCA
GCCTCCCGCACCTCCTTCCAGGGGGAGAAGAGTGCTGTCATCTAGGCTGACTCCCTTTCCTGAG
GCCTGCATGAGGGGGGCCTGGGACCTCCAAGCCCCCCAGGCTGGCCAACACGGCTCTGCATGTG
TCTCTTGGCCCCACCCACCGTGAGCAGAGAACCTGTATTTCCCTGGAGATCCTGACAGCGATGG
GGGCAGAGACCCAGAGACTTGGGAGTGGCTTCTGGCTTCTAGTTCTGGCCTTAGTTAGCGTGAT
GCGTACTCCTTCTCTTGTGTGATCGTTCGTCCATATATATGCATGTATGTGAGCATGTGTGTGG
ATGGCAGTGTGACTGCAGAACAGAGGTGACAATGCCAGGTTGGCACCACCACAGGCTCCAGCAC
ACCCAAGTCCCTGCCCCTCCCATAGGGGCTGTCTTCCCATCCTACGGCATTCAGCCGTGGTCCC
CAGAAGGCAGCAGGTGGATGATCCTGGTAGGAATGTAGGACCCTGGACTGGGCTCCTCTCCCTG
CTCTGAGAGGACATCTGGGGCTGCTTGGCTGTAGTGGGAGAGTTCCACCCTCCTCCCTTGGAGG
CTTTCTAGGTGGCATGGTTGTCTGTATTGGAAGGGTAAAGCCCCATGGCAGGAGAGGCCCAGCC
CATCTGGATCTCAGTGAGTGCATTCAGTGTTCCTGGCTTTAGCCTGAGGTTGTACTCCAATGCC
GTCTCCTATTTCCAAGCAAGGTGATCCTGACCTGTGTCCAAGTCCACTTTCTACCAGTGGCTGG
TGTGTTTTCAGAGGGAAGGCACTAACTTCCAATTCACTGTGAGGAGTGTGAGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTGGGGGGCCGGTTGGGCCCTAAA
AATTAAAGCAGGCAAAGATGGTCAGCGTGCAAGGGGCGCCTATCTGGGAAGGCCAGCATCAGGC
TGACTGACACTCCAGGCTTCTCTGAGGGCTGACTGAACTCCCAGCAGAGGATCTGGGTGCTGGA
GGAGGGTTTTGAGGTCTCCAAACTGACCTGGTCTCTTCTCCAGACGCCCAGACAAGCCCTAATC
TATGGGACATTGGGACACTGTCTAGACTTGAGACTCCTCCTTTGTCTCTCCAGGATTGGCACCT
ACTAAGGTTGTAGCCATCTAGGACCTGAAGGAACTGGAGGCTAGATGGGGCCTCTGGGACTTAG
ACTCTGCCTCAGGCGTGGGTCTGCCCTTGCCCGTGCCTCTCATGGATTCTGGAGAGTTAGTCTG
GGAACTGGTCCGGTTTAGAGACCTTCGGTCACCTAGACTTGTCCCCGAGATGTTGATGTTCCAG
GGTCTCCTGGGGAAGGGTCTCTGGCCTAGGAGTATTGGCAGGACCTGTTGGCCGTAACCATGGG
CAGGGATGTGTGTCCAAGAGAGGTTTCATGGGATGGATGGCAAGAGGCAGGCAGGAGCTGCAGA
GCCGTCCCCAGGTGGCCTGCAAGATGCCTCTGCTCCTTTGCAGCTTGCTACAGGGAAGCCCTGG
TTTCAGTCTTCCTGGTGAGGCTGACAGTGATGAGCCCTATACCTCCATGTGTCTGATCCTCAAG
TCAAACTAAAATAAAGACAAAACATCTGAAAAAAAAAAAAAAAAAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_001119752	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI60847	(Get FASTA)	NCBI Sequence Viewer
	EDL97429	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057665
	ENSRNOP00000057665.4

RefSeq Acc Id:

NP_001119752 ⟸ NM_001126280

- UniProtKB:

B1H238 (UniProtKB/TrEMBL), A6KBV2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALNNFLFAQCVCYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTMQGRERFTVQE
WGPPAACRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFYAFLNLLVSAFVVFLVFIASTIV
SVGFTMWCDTITEKGSAPHSCEEFQETDLELNVDNSAFYHQFAIAQFGLRASWLAWLAITTLAF
LKVYHNYRQEDLLDSLVHEKELLLARPASRTSFQGEKSAVI

hide sequence

RefSeq Acc Id:

ENSRNOP00000057665 ⟸ ENSRNOT00000060943

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PU04-F1-model_v2	AlphaFold	E9PU04	1-233	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310269	AgrOrtholog
BioCyc Gene	G2FUF-35791	BioCyc
Ensembl Genes	ENSRNOG00000013128	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000060943	ENTREZGENE
	ENSRNOT00000060943.4	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8362921	IMAGE-MGC_LOAD
InterPro	TMEM179	UniProtKB/TrEMBL
KEGG Report	rno:314472	UniProtKB/TrEMBL
MGC_CLONE	MGC:187581	IMAGE-MGC_LOAD
NCBI Gene	314472	ENTREZGENE
PANTHER	PTHR31872	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 179	UniProtKB/TrEMBL
PhenoGen	Tmem179	PhenoGen
RatGTEx	ENSRNOG00000013128	RatGTEx
UniProt	A6KBV2	ENTREZGENE, UniProtKB/TrEMBL
	B1H238	ENTREZGENE, UniProtKB/TrEMBL
	E9PU04_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-10	Tmem179	transmembrane protein 179	RGD1310269	hypothetical LOC314472	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1310269	hypothetical LOC314472	RGD1310269_predicted	hypothetical LOC314472 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1310269_predicted	hypothetical LOC314472 (predicted)	LOC314472_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC314472_predicted	hypothetical LOC314472 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar