Exosc7 (exosome component 7) - Rat Genome Database

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Gene: Exosc7 (exosome component 7) Rattus norvegicus
Analyze
Symbol: Exosc7
Name: exosome component 7
RGD ID: 1309758
Description: Predicted to be involved in RNA metabolic process. Predicted to be located in cytosol and nucleolus. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Orthologous to human EXOSC7 (exosome component 7); PARTICIPATES IN RNA degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: exosome complex component RRP42; LOC316098
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88131,650,988 - 131,676,399 (+)NCBIGRCr8
mRatBN7.28122,773,607 - 122,798,943 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8122,773,591 - 122,799,270 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8128,363,870 - 128,389,237 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08126,562,810 - 126,588,177 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08124,391,031 - 124,416,392 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08132,204,628 - 132,229,968 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,204,604 - 132,229,969 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08131,357,736 - 131,383,562 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,868,051 - 127,893,391 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18127,887,772 - 127,913,121 (+)NCBI
Celera8121,886,626 - 121,911,947 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:17174896   PMID:20531389   PMID:25931508  


Genomics

Comparative Map Data
Exosc7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88131,650,988 - 131,676,399 (+)NCBIGRCr8
mRatBN7.28122,773,607 - 122,798,943 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8122,773,591 - 122,799,270 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8128,363,870 - 128,389,237 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08126,562,810 - 126,588,177 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08124,391,031 - 124,416,392 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08132,204,628 - 132,229,968 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,204,604 - 132,229,969 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08131,357,736 - 131,383,562 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,868,051 - 127,893,391 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18127,887,772 - 127,913,121 (+)NCBI
Celera8121,886,626 - 121,911,947 (+)NCBICelera
Cytogenetic Map8q32NCBI
EXOSC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38344,976,244 - 45,012,668 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl344,975,241 - 45,036,066 (+)EnsemblGRCh38hg38GRCh38
GRCh37345,017,736 - 45,054,160 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36344,992,768 - 45,027,966 (+)NCBINCBI36Build 36hg18NCBI36
Build 34344,992,767 - 45,027,966NCBI
Celera344,955,701 - 44,992,110 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef345,061,602 - 45,098,020 (+)NCBIHuRef
CHM1_1344,967,719 - 45,004,138 (+)NCBICHM1_1
T2T-CHM13v2.0344,991,986 - 45,028,405 (+)NCBIT2T-CHM13v2.0
Exosc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399122,942,310 - 122,965,194 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9122,942,280 - 122,965,194 (+)EnsemblGRCm39 Ensembl
GRCm389123,113,231 - 123,136,129 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9123,113,215 - 123,136,129 (+)EnsemblGRCm38mm10GRCm38
MGSCv379123,022,349 - 123,045,247 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369122,961,929 - 122,984,827 (+)NCBIMGSCv36mm8
Celera9123,564,456 - 123,587,272 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map973.8NCBI
Exosc7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,677,692 - 26,697,977 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,677,692 - 26,697,977 (-)NCBIChiLan1.0ChiLan1.0
EXOSC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2244,934,529 - 44,970,666 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1344,939,295 - 44,975,432 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0344,877,339 - 44,913,510 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1345,932,301 - 46,024,604 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl345,932,343 - 46,023,269 (+)Ensemblpanpan1.1panPan2
EXOSC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12043,343,573 - 43,379,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2043,343,573 - 43,379,574 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2043,259,496 - 43,295,233 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02043,828,607 - 43,864,544 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2043,828,607 - 43,864,501 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,067,480 - 43,102,991 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02043,475,191 - 43,510,686 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02043,751,254 - 43,787,207 (-)NCBIUU_Cfam_GSD_1.0
Exosc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118198,398,078 - 198,424,459 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936695750,640 - 777,113 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936695748,645 - 776,767 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOSC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1328,176,793 - 28,208,975 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11328,176,806 - 28,206,435 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21331,054,779 - 31,084,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EXOSC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1226,452,155 - 6,485,411 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl226,452,195 - 6,485,276 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041160,683,880 - 160,717,155 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exosc7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473075,541,568 - 75,561,767 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473075,541,677 - 75,561,826 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Exosc7
85 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:197
Count of miRNA genes:148
Interacting mature miRNAs:170
Transcripts:ENSRNOT00000005975
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat

Markers in Region
D8Rat71  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28122,812,566 - 122,812,818 (+)MAPPERmRatBN7.2
Rnor_6.08132,243,591 - 132,243,842NCBIRnor6.0
Rnor_5.08131,397,184 - 131,397,435UniSTSRnor5.0
RGSC_v3.48127,906,996 - 127,907,359RGDRGSC3.4
RGSC_v3.48127,907,014 - 127,907,265UniSTSRGSC3.4
RGSC_v3.18127,926,751 - 127,927,002RGD
Celera8121,925,567 - 121,925,818UniSTS
RH 3.4 Map81259.4UniSTS
RH 3.4 Map81259.4RGD
SHRSP x BN Map885.2699UniSTS
SHRSP x BN Map885.2699RGD
Cytogenetic Map8q32UniSTS
RH143893  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28122,815,422 - 122,815,566 (+)MAPPERmRatBN7.2
Rnor_6.08132,246,447 - 132,246,590NCBIRnor6.0
Rnor_5.08131,400,040 - 131,400,183UniSTSRnor5.0
RGSC_v3.48127,909,870 - 127,910,013UniSTSRGSC3.4
Celera8121,928,423 - 121,928,566UniSTS
RH 3.4 Map81275.9UniSTS
Cytogenetic Map8q32UniSTS
AW524597  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28122,798,743 - 122,798,836 (+)MAPPERmRatBN7.2
Rnor_6.08132,229,769 - 132,229,861NCBIRnor6.0
Rnor_5.08131,383,363 - 131,383,455UniSTSRnor5.0
RGSC_v3.48127,893,192 - 127,893,284UniSTSRGSC3.4
Celera8121,911,748 - 121,911,840UniSTS
RH 3.4 Map81257.9UniSTS
Cytogenetic Map8q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 55 39 19 39 3 6 74 35 41 11 3
Low 10 2 2 2 5 5 5
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000084725   ⟹   ENSRNOP00000069523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8122,773,593 - 122,799,270 (+)Ensembl
Rnor_6.0 Ensembl8132,204,604 - 132,229,969 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116190   ⟹   ENSRNOP00000088571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8122,779,110 - 122,799,270 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117342   ⟹   ENSRNOP00000079650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8122,773,591 - 122,795,271 (+)Ensembl
RefSeq Acc Id: NM_001100725   ⟹   NP_001094195
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88131,651,063 - 131,676,398 (+)NCBI
mRatBN7.28122,773,607 - 122,798,943 (+)NCBI
Rnor_6.08132,204,628 - 132,229,968 (+)NCBI
Rnor_5.08131,357,736 - 131,383,562 (+)NCBI
RGSC_v3.48127,868,051 - 127,893,391 (+)RGD
Celera8121,886,626 - 121,911,947 (+)RGD
Sequence:
RefSeq Acc Id: XM_063265663   ⟹   XP_063121733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88131,650,988 - 131,676,399 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001094195 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121733 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89995 (Get FASTA)   NCBI Sequence Viewer  
  EDL76765 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069523
  ENSRNOP00000069523.1
  ENSRNOP00000079650.1
  ENSRNOP00000088571.1
RefSeq Acc Id: NP_001094195   ⟸   NM_001100725
- UniProtKB: G3V6K3 (UniProtKB/TrEMBL),   A6I4B2 (UniProtKB/TrEMBL),   A0A8I6A842 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069523   ⟸   ENSRNOT00000084725
RefSeq Acc Id: ENSRNOP00000088571   ⟸   ENSRNOT00000116190
RefSeq Acc Id: ENSRNOP00000079650   ⟸   ENSRNOT00000117342
RefSeq Acc Id: XP_063121733   ⟸   XM_063265663
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V6K3-F1-model_v2 AlphaFold G3V6K3 1-291 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696405
Promoter ID:EPDNEW_R6929
Type:multiple initiation site
Name:Exosc7_1
Description:exosome component 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08132,204,614 - 132,204,674EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309758 AgrOrtholog
BioCyc Gene G2FUF-28621 BioCyc
Ensembl Genes ENSRNOG00000060337 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084725 ENTREZGENE
  ENSRNOT00000084725.2 UniProtKB/TrEMBL
  ENSRNOT00000116190.1 UniProtKB/TrEMBL
  ENSRNOT00000117342.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.230.70 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7320193 IMAGE-MGC_LOAD
InterPro ExoRNase_PH_dom1 UniProtKB/TrEMBL
  ExoRNase_PH_dom2 UniProtKB/TrEMBL
  ExoRNase_PH_dom2_sf UniProtKB/TrEMBL
  PNPase/RNase_PH_dom UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
KEGG Report rno:316098 UniProtKB/TrEMBL
MGC_CLONE MGC:109444 IMAGE-MGC_LOAD
NCBI Gene 316098 ENTREZGENE
PANTHER EXOSOME COMPLEX COMPONENT RRP42 UniProtKB/TrEMBL
  EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN UniProtKB/TrEMBL
Pfam RNase_PH UniProtKB/TrEMBL
  RNase_PH_C UniProtKB/TrEMBL
PhenoGen Exosc7 PhenoGen
RatGTEx ENSRNOG00000060337 RatGTEx
Superfamily-SCOP Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  SSF55666 UniProtKB/TrEMBL
UniProt A0A8I5ZNY7_RAT UniProtKB/TrEMBL
  A0A8I6A842 ENTREZGENE, UniProtKB/TrEMBL
  A6I4B2 ENTREZGENE, UniProtKB/TrEMBL
  G3V6K3 ENTREZGENE, UniProtKB/TrEMBL
  Q5EB65_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Exosc7  exosome component 7  Exosc7_predicted  exosome component 7 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Exosc7_predicted  exosome component 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED