Hapstr1 (HUWE1 associated protein modifying stress responses) - Rat Genome Database

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Gene: Hapstr1 (HUWE1 associated protein modifying stress responses) Rattus norvegicus
Analyze
Symbol: Hapstr1
Name: HUWE1 associated protein modifying stress responses
RGD ID: 1309748
Description: Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of signal transduction by p53 class mediator and regulation of cellular response to stress. Predicted to be located in cytoplasm and nucleus. Orthologous to human HAPSTR1 (HUWE1 associated protein modifying stress responses); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cobalt dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: HUWE1-associated protein modifying stress responses 1; hypothetical protein LOC302913; LOC302913; RGD1309748; similar to CG4768-PA; uncharacterized protein LOC302913; UPF0472 protein C16orf72 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8107,252,737 - 7,281,678 (-)NCBIGRCr8
mRatBN7.2106,746,037 - 6,774,992 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl106,746,048 - 6,774,992 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1011,447,696 - 11,476,606 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01010,951,416 - 10,980,403 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0106,600,947 - 6,629,856 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0106,841,071 - 6,870,011 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl106,841,071 - 6,870,011 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0105,639,257 - 5,668,196 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4106,781,181 - 6,810,122 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1106,781,846 - 6,809,760 (-)NCBI
Celera105,742,874 - 5,771,818 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16778019  


Genomics

Comparative Map Data
Hapstr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8107,252,737 - 7,281,678 (-)NCBIGRCr8
mRatBN7.2106,746,037 - 6,774,992 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl106,746,048 - 6,774,992 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1011,447,696 - 11,476,606 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01010,951,416 - 10,980,403 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0106,600,947 - 6,629,856 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0106,841,071 - 6,870,011 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl106,841,071 - 6,870,011 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0105,639,257 - 5,668,196 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4106,781,181 - 6,810,122 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1106,781,846 - 6,809,760 (-)NCBI
Celera105,742,874 - 5,771,818 (-)NCBICelera
Cytogenetic Map10q12NCBI
HAPSTR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38169,091,644 - 9,121,635 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl169,091,644 - 9,121,635 (+)EnsemblGRCh38hg38GRCh38
GRCh37169,185,501 - 9,215,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36169,093,038 - 9,121,056 (+)NCBINCBI36Build 36hg18NCBI36
Celera169,353,303 - 9,381,316 (+)NCBICelera
Cytogenetic Map16p13.2NCBI
HuRef169,106,248 - 9,134,251 (+)NCBIHuRef
CHM1_1169,185,610 - 9,213,629 (+)NCBICHM1_1
T2T-CHM13v2.0169,124,455 - 9,154,443 (+)NCBIT2T-CHM13v2.0
Hapstr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39168,647,964 - 8,676,788 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl168,647,964 - 8,676,786 (+)EnsemblGRCm39 Ensembl
GRCm38168,830,100 - 8,858,924 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl168,830,100 - 8,858,922 (+)EnsemblGRCm38mm10GRCm38
MGSCv37168,830,193 - 8,859,017 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36168,745,965 - 8,774,794 (+)NCBIMGSCv36mm8
Celera169,478,895 - 9,507,724 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map164.37NCBI
Hapstr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554429,164,113 - 9,189,588 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554429,161,383 - 9,189,376 (-)NCBIChiLan1.0ChiLan1.0
HAPSTR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,628,663 - 9,656,688 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11613,406,891 - 13,434,929 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0168,022,686 - 8,050,704 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1169,258,705 - 9,286,308 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl169,258,752 - 9,283,523 (+)Ensemblpanpan1.1panPan2
HAPSTR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1633,124,932 - 33,151,221 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl633,126,988 - 33,151,466 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha634,516,175 - 34,543,244 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0633,323,636 - 33,350,726 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl633,323,651 - 33,351,154 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1633,126,111 - 33,153,210 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0632,996,367 - 33,023,462 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0633,418,296 - 33,445,408 (-)NCBIUU_Cfam_GSD_1.0
Hapstr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344109,996,985 - 110,021,605 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365307,778,529 - 7,867,667 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HAPSTR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl333,626,975 - 33,655,299 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1333,626,961 - 33,655,338 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2334,419,377 - 34,447,650 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HAPSTR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.158,652,265 - 8,681,162 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl58,652,262 - 8,682,105 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606821,517,240 - 21,546,079 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hapstr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248246,452,880 - 6,482,833 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248246,452,551 - 6,481,081 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hapstr1
243 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1068
Count of miRNA genes:327
Interacting mature miRNAs:431
Transcripts:ENSRNOT00000003439
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat

Markers in Region
RH130190  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2106,746,747 - 6,746,958 (+)MAPPERmRatBN7.2
Rnor_6.0106,841,771 - 6,841,981NCBIRnor6.0
Rnor_5.0105,639,957 - 5,640,167UniSTSRnor5.0
RGSC_v3.4106,781,881 - 6,782,091UniSTSRGSC3.4
Celera105,743,574 - 5,743,784UniSTS
Cytogenetic Map10q12UniSTS
RH131219  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2106,752,390 - 6,752,551 (+)MAPPERmRatBN7.2
Rnor_6.0106,847,414 - 6,847,574NCBIRnor6.0
Rnor_5.0105,645,600 - 5,645,760UniSTSRnor5.0
RGSC_v3.4106,787,524 - 6,787,684UniSTSRGSC3.4
Celera105,749,217 - 5,749,377UniSTS
Cytogenetic Map10q12UniSTS
AA792997  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2106,748,330 - 6,748,466 (+)MAPPERmRatBN7.2
Rnor_6.0106,843,354 - 6,843,489NCBIRnor6.0
Rnor_5.0105,641,540 - 5,641,675UniSTSRnor5.0
RGSC_v3.4106,783,464 - 6,783,599UniSTSRGSC3.4
Celera105,745,157 - 5,745,292UniSTS
Cytogenetic Map10q12UniSTS
AI548550  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2106,761,675 - 6,761,890 (+)MAPPERmRatBN7.2
Rnor_6.0106,856,695 - 6,856,909NCBIRnor6.0
Rnor_5.0105,654,880 - 5,655,094UniSTSRnor5.0
RGSC_v3.4106,796,806 - 6,797,020UniSTSRGSC3.4
Celera105,758,500 - 5,758,714UniSTS
Cytogenetic Map10q12UniSTS
C160rf72  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23138,745,980 - 138,746,129 (-)MAPPERmRatBN7.2
mRatBN7.2106,774,430 - 6,774,580 (+)MAPPERmRatBN7.2
Rnor_6.0106,869,450 - 6,869,599NCBIRnor6.0
Rnor_6.03145,682,022 - 145,682,170NCBIRnor6.0
Rnor_5.0105,667,635 - 5,667,784UniSTSRnor5.0
Rnor_5.03152,045,176 - 152,045,324UniSTSRnor5.0
RGSC_v3.43140,403,612 - 140,403,760UniSTSRGSC3.4
RGSC_v3.4106,809,561 - 6,809,710UniSTSRGSC3.4
Celera105,771,257 - 5,771,406UniSTS
Celera3137,491,440 - 137,491,588UniSTS
Cytogenetic Map3q41UniSTS
Cytogenetic Map10q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 55 39 19 39 8 11 74 35 41 11 8
Low 2 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000003439   ⟹   ENSRNOP00000003439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl106,746,048 - 6,774,992 (-)Ensembl
Rnor_6.0 Ensembl106,841,071 - 6,870,011 (-)Ensembl
RefSeq Acc Id: NM_001106972   ⟹   NP_001100442
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,252,737 - 7,281,678 (-)NCBI
mRatBN7.2106,746,048 - 6,774,992 (-)NCBI
Rnor_6.0106,841,071 - 6,870,011 (-)NCBI
Rnor_5.0105,639,257 - 5,668,196 (-)NCBI
RGSC_v3.4106,781,181 - 6,810,122 (-)RGD
Celera105,742,874 - 5,771,818 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245754   ⟹   XP_006245816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,253,403 - 7,281,673 (-)NCBI
mRatBN7.2106,746,037 - 6,774,932 (-)NCBI
Rnor_6.0106,841,737 - 6,870,006 (-)NCBI
Rnor_5.0105,639,257 - 5,668,196 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001100442 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245816 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL96237 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003439
  ENSRNOP00000003439.4
Reference Protein Sequences
RefSeq Acc Id: NP_001100442   ⟸   NM_001106972
- UniProtKB: D3ZK25 (UniProtKB/TrEMBL),   A6K4L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245816   ⟸   XM_006245754
- Peptide Label: isoform X1
- UniProtKB: D3ZK25 (UniProtKB/TrEMBL),   A6K4L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000003439   ⟸   ENSRNOT00000003439

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZK25-F1-model_v2 AlphaFold D3ZK25 1-275 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696949
Promoter ID:EPDNEW_R7474
Type:multiple initiation site
Name:RGD1309748_1
Description:similar to CG4768-PA
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0106,869,973 - 6,870,033EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309748 AgrOrtholog
BioCyc Gene G2FUF-26105 BioCyc
Ensembl Genes ENSRNOG00000002545 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003439 ENTREZGENE
  ENSRNOT00000003439.5 UniProtKB/TrEMBL
InterPro C16orf72-like UniProtKB/TrEMBL
  DUF4588 UniProtKB/TrEMBL
KEGG Report rno:302913 UniProtKB/TrEMBL
NCBI Gene 302913 ENTREZGENE
PANTHER PTHR31624 UniProtKB/TrEMBL
  UPF0472 PROTEIN C16ORF72 UniProtKB/TrEMBL
Pfam DUF4588 UniProtKB/TrEMBL
PhenoGen Hapstr1 PhenoGen
RatGTEx ENSRNOG00000002545 RatGTEx
UniProt A6K4L5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZK25 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-15 Hapstr1  HUWE1 associated protein modifying stress responses  RGD1309748  similar to CG4768-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309748  similar to CG4768-PA   RGD1309748_predicted  similar to CG4768-PA (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309748_predicted  similar to CG4768-PA (predicted)  LOC302913_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC302913_predicted  similar to CG4768-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL