Paqr4 (progestin and adipoQ receptor family member 4) - Rat Genome Database

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Gene: Paqr4 (progestin and adipoQ receptor family member 4) Rattus norvegicus
Analyze
Symbol: Paqr4
Name: progestin and adipoQ receptor family member 4
RGD ID: 1309533
Description: Predicted to enable signaling receptor activity. Predicted to be located in membrane. Orthologous to human PAQR4 (progestin and adipoQ receptor family member 4); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC302967; MGC109357; progestin and adipoQ receptor family member IV
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,263,559 - 13,267,237 (-)NCBIGRCr8
mRatBN7.21012,758,970 - 12,762,649 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1012,758,972 - 12,762,584 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,503,291 - 17,506,903 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01016,992,081 - 16,995,693 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,491,694 - 12,495,294 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,072,252 - 13,075,866 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,070,146 - 13,075,864 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01012,891,714 - 12,895,328 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41012,993,681 - 12,997,295 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11012,993,682 - 12,997,295 (-)NCBI
Celera1012,454,271 - 12,457,885 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. PAQR proteins: a novel membrane receptor family defined by an ancient 7-transmembrane pass motif. Tang YT, etal., J Mol Evol. 2005 Sep;61(3):372-80. Epub 2005 Jul 21.
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Paqr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,263,559 - 13,267,237 (-)NCBIGRCr8
mRatBN7.21012,758,970 - 12,762,649 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1012,758,972 - 12,762,584 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,503,291 - 17,506,903 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01016,992,081 - 16,995,693 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,491,694 - 12,495,294 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,072,252 - 13,075,866 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,070,146 - 13,075,864 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01012,891,714 - 12,895,328 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41012,993,681 - 12,997,295 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11012,993,682 - 12,997,295 (-)NCBI
Celera1012,454,271 - 12,457,885 (-)NCBICelera
Cytogenetic Map10q12NCBI
PAQR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,969,348 - 2,973,484 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,969,270 - 2,973,484 (+)EnsemblGRCh38hg38GRCh38
GRCh37163,019,349 - 3,023,485 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,959,343 - 2,963,486 (+)NCBINCBI36Build 36hg18NCBI36
Build 34162,959,598 - 2,963,484NCBI
Celera163,224,788 - 3,228,931 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,991,833 - 2,995,976 (+)NCBIHuRef
CHM1_1163,019,322 - 3,023,465 (+)NCBICHM1_1
T2T-CHM13v2.0162,996,027 - 3,000,163 (+)NCBIT2T-CHM13v2.0
Paqr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391723,955,160 - 23,959,873 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1723,955,160 - 23,959,841 (-)EnsemblGRCm39 Ensembl
GRCm381723,736,186 - 23,740,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1723,736,186 - 23,740,867 (-)EnsemblGRCm38mm10GRCm38
MGSCv371723,873,153 - 23,877,297 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,463,808 - 23,467,952 (-)NCBIMGSCv36mm8
Celera1724,229,965 - 24,234,205 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.02NCBI
Paqr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,373,092 - 14,375,862 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,373,092 - 14,375,862 (-)NCBIChiLan1.0ChiLan1.0
PAQR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2183,513,987 - 3,518,243 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,292,501 - 7,296,636 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,911,141 - 1,915,334 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1163,083,173 - 3,087,411 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl163,083,173 - 3,087,411 (+)Ensemblpanpan1.1panPan2
PAQR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,210,476 - 38,213,689 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,210,481 - 38,213,670 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,446,383 - 39,454,127 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,516,466 - 38,524,210 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,521,889 - 38,524,155 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,202,228 - 38,209,972 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,174,756 - 38,182,501 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,650,527 - 38,658,271 (-)NCBIUU_Cfam_GSD_1.0
Paqr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,509,662 - 105,516,023 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,196,527 - 1,200,091 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,196,650 - 1,200,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAQR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1339,206,077 - 39,213,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,486,456 - 40,489,918 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAQR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,708,807 - 2,713,104 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,709,245 - 2,713,256 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606828,121,439 - 28,125,569 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Paqr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824712,355 - 715,700 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824711,755 - 715,815 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Paqr4
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:440
Count of miRNA genes:210
Interacting mature miRNAs:243
Transcripts:ENSRNOT00000005220
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 55 1
Low 3 43 49 33 19 33 6 9 19 32 37 11 6
Below cutoff 8 8 8 2 2 3 3 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005220   ⟹   ENSRNOP00000005220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1013,070,146 - 13,075,864 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116169   ⟹   ENSRNOP00000087345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1012,758,972 - 12,762,584 (-)Ensembl
RefSeq Acc Id: NM_001017377   ⟹   NP_001017377
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,263,559 - 13,267,173 (-)NCBI
mRatBN7.21012,758,970 - 12,762,584 (-)NCBI
Rnor_6.01013,072,252 - 13,075,866 (-)NCBI
Rnor_5.01012,891,714 - 12,895,328 (-)NCBI
RGSC_v3.41012,993,681 - 12,997,295 (-)RGD
Celera1012,454,271 - 12,457,885 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245871   ⟹   XP_006245933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,263,559 - 13,267,237 (-)NCBI
mRatBN7.21012,758,970 - 12,762,080 (-)NCBI
Rnor_6.01013,072,252 - 13,075,379 (-)NCBI
Rnor_5.01012,891,714 - 12,895,328 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039085852   ⟹   XP_038941780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,263,559 - 13,267,237 (-)NCBI
mRatBN7.21012,758,970 - 12,762,649 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001017377 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245933 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941780 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH92635 (Get FASTA)   NCBI Sequence Viewer  
  EDM03772 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000087345
  ENSRNOP00000087345.1
Reference Protein Sequences
RefSeq Acc Id: NP_001017377   ⟸   NM_001017377
- UniProtKB: Q568Z3 (UniProtKB/TrEMBL),   A0A8I6A5M9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245933   ⟸   XM_006245871
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000005220   ⟸   ENSRNOT00000005220
RefSeq Acc Id: XP_038941780   ⟸   XM_039085852
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000087345   ⟸   ENSRNOT00000116169

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q568Z3-F1-model_v2 AlphaFold Q568Z3 1-273 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696995
Promoter ID:EPDNEW_R7519
Type:multiple initiation site
Name:Paqr4_1
Description:progestin and adipoQ receptor family member 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01013,075,855 - 13,075,915EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309533 AgrOrtholog
BioCyc Gene G2FUF-25909 BioCyc
Ensembl Genes ENSRNOG00000003721 Ensembl
  ENSRNOG00000069091 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000116169 ENTREZGENE
  ENSRNOT00000116169.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7315721 IMAGE-MGC_LOAD
InterPro HlyIII_related UniProtKB/TrEMBL
KEGG Report rno:302967 UniProtKB/TrEMBL
MGC_CLONE MGC:109357 IMAGE-MGC_LOAD
NCBI Gene 302967 ENTREZGENE
PANTHER HlyIII_related UniProtKB/TrEMBL
  PROGESTIN AND ADIPOQ RECEPTOR FAMILY MEMBER 4 UniProtKB/TrEMBL
Pfam HlyIII UniProtKB/TrEMBL
PhenoGen Paqr4 PhenoGen
RatGTEx ENSRNOG00000003721 RatGTEx
  ENSRNOG00000069091 RatGTEx
UniProt A0A8I6A5M9 ENTREZGENE, UniProtKB/TrEMBL
  Q568Z3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Paqr4  progestin and adipoQ receptor family member 4  Paqr4  progestin and adipoQ receptor family member IV  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Paqr4  progestin and adipoQ receptor family member IV  Paqr4_predicted  progestin and adipoQ receptor family member IV (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Paqr4_predicted  progestin and adipoQ receptor family member IV (predicted)      Symbol and Name status set to approved 70820 APPROVED