Ermard (ER membrane-associated RNA degradation) - Rat Genome Database

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Gene: Ermard (ER membrane-associated RNA degradation) Rattus norvegicus
Analyze
Symbol: Ermard
Name: ER membrane-associated RNA degradation
RGD ID: 1309374
Description: Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ERMARD (ER membrane associated RNA degradation); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; indole-3-methanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: endoplasmic reticulum membrane-associated RNA degradation protein; ER membrane-associated RNA degradation protein; hypothetical protein LOC361485; LOC361485; MGC125089; RGD1309374; RGD1562376; uncharacterized protein LOC361485
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,656,414 - 64,675,803 (+)NCBIGRCr8
mRatBN7.2155,983,312 - 56,004,569 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl155,983,403 - 56,002,687 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0156,982,742 - 57,008,076 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl156,982,821 - 57,001,665 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,165,821 - 58,185,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,905,895 - 53,925,656 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,909,505 - 53,916,096 (+)NCBI
Celera152,195,633 - 52,219,900 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Ermard
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,656,414 - 64,675,803 (+)NCBIGRCr8
mRatBN7.2155,983,312 - 56,004,569 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl155,983,403 - 56,002,687 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0156,982,742 - 57,008,076 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl156,982,821 - 57,001,665 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,165,821 - 58,185,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,905,895 - 53,925,656 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,909,505 - 53,916,096 (+)NCBI
Celera152,195,633 - 52,219,900 (+)NCBICelera
Cytogenetic Map1q12NCBI
ERMARD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386169,751,306 - 169,781,600 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6169,751,622 - 169,781,600 (+)EnsemblGRCh38hg38GRCh38
GRCh376170,151,718 - 170,181,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366169,893,646 - 169,923,542 (+)NCBINCBI36Build 36hg18NCBI36
Build 346169,969,352 - 169,999,240NCBI
Celera6170,861,896 - 170,891,792 (+)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6167,571,485 - 167,601,446 (+)NCBIHuRef
CHM1_16170,413,940 - 170,443,916 (+)NCBICHM1_1
T2T-CHM13v2.06171,105,236 - 171,135,403 (+)NCBIT2T-CHM13v2.0
Ermard
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,261,825 - 15,310,307 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,261,470 - 15,310,306 (+)EnsemblGRCm39 Ensembl
GRCm381715,041,551 - 15,090,045 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1715,041,208 - 15,090,044 (+)EnsemblGRCm38mm10GRCm38
MGSCv371715,178,576 - 15,201,196 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361714,715,200 - 14,769,186 (+)NCBIMGSCv36mm8
Celera1715,839,838 - 15,854,990 (+)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
Ermard
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,835,751 - 3,865,321 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554113,838,125 - 3,866,282 (-)NCBIChiLan1.0ChiLan1.0
ERMARD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25190,002,047 - 190,032,613 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16187,885,402 - 187,916,024 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06167,823,630 - 167,854,200 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16172,863,406 - 172,891,822 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6172,861,675 - 172,891,822 (+)Ensemblpanpan1.1panPan2
ERMARD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11271,998,431 - 72,024,726 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1271,998,437 - 72,023,512 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1271,758,577 - 71,783,581 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01272,880,117 - 72,905,280 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1272,880,086 - 72,909,110 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11272,232,744 - 72,257,762 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01272,073,611 - 72,098,576 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01272,463,145 - 72,489,411 (+)NCBIUU_Cfam_GSD_1.0
Ermard
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946150,949,595 - 150,989,755 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648918,203,204 - 18,236,552 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648918,201,790 - 18,244,810 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERMARD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1512,678 - 540,896 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11513,364 - 540,948 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.211,069,587 - 1,092,011 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERMARD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,558,822 - 97,592,030 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604069,555,223 - 69,586,946 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ermard
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248505,684,312 - 5,709,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248505,683,191 - 5,709,015 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ermard
82 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:37
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000059845
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat

Markers in Region
RH140578  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2155,994,533 - 55,994,741 (+)MAPPERmRatBN7.2
Rnor_6.0156,993,926 - 56,994,133NCBIRnor6.0
Rnor_5.0158,177,003 - 58,177,210UniSTSRnor5.0
RGSC_v3.4153,917,050 - 53,917,257UniSTSRGSC3.4
RH 3.4 Map1658.6UniSTS
Cytogenetic Map1q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 25 9 19 9 1 1 74 34 38 11 1
Low 15 32 32 32 7 10 1 3 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005498072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005498073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC079331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC088244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000059845   ⟹   ENSRNOP00000056590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl155,983,403 - 56,002,687 (+)Ensembl
Rnor_6.0 Ensembl156,982,821 - 57,001,665 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119249   ⟹   ENSRNOP00000085620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl155,983,424 - 56,002,687 (+)Ensembl
RefSeq Acc Id: NM_001419620   ⟹   NP_001406549
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,529 - 64,675,803 (+)NCBI
mRatBN7.2155,983,410 - 56,002,684 (+)NCBI
RefSeq Acc Id: XM_006227972   ⟹   XP_006228034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,415 - 64,675,803 (+)NCBI
mRatBN7.2155,983,312 - 56,004,569 (+)NCBI
Rnor_6.0156,982,742 - 57,008,076 (+)NCBI
Rnor_5.0158,165,821 - 58,185,153 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006227974   ⟹   XP_006228036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,596 - 64,675,803 (+)NCBI
mRatBN7.2155,983,430 - 56,004,569 (+)NCBI
Rnor_6.0156,982,820 - 57,008,076 (+)NCBI
Rnor_5.0158,165,821 - 58,185,153 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006227975   ⟹   XP_006228037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,520 - 64,675,803 (+)NCBI
mRatBN7.2155,983,390 - 56,004,569 (+)NCBI
Rnor_6.0156,982,816 - 57,008,076 (+)NCBI
Rnor_5.0158,165,821 - 58,185,153 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008758816   ⟹   XP_008757038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,415 - 64,675,803 (+)NCBI
mRatBN7.2155,983,312 - 56,004,569 (+)NCBI
Rnor_6.0156,982,742 - 57,008,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008758817   ⟹   XP_008757039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,659,941 - 64,675,803 (+)NCBI
mRatBN7.2155,986,770 - 56,004,569 (+)NCBI
Rnor_6.0156,986,162 - 57,008,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589901   ⟹   XP_017445390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,662,442 - 64,675,803 (+)NCBI
mRatBN7.2155,989,181 - 56,004,569 (+)NCBI
Rnor_6.0156,988,835 - 57,008,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039100085   ⟹   XP_038956013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,415 - 64,675,803 (+)NCBI
mRatBN7.2155,983,312 - 56,004,569 (+)NCBI
RefSeq Acc Id: XM_039100111   ⟹   XP_038956039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,414 - 64,669,306 (+)NCBI
mRatBN7.2155,983,312 - 55,996,205 (+)NCBI
RefSeq Acc Id: XM_063266197   ⟹   XP_063122267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,415 - 64,675,803 (+)NCBI
RefSeq Acc Id: XM_063266202   ⟹   XP_063122272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,415 - 64,675,803 (+)NCBI
RefSeq Acc Id: XM_063266215   ⟹   XP_063122285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,659,209 - 64,675,803 (+)NCBI
RefSeq Acc Id: XR_005498072
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,414 - 64,673,269 (+)NCBI
mRatBN7.2155,983,312 - 56,000,147 (+)NCBI
RefSeq Acc Id: XR_005498073
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,414 - 64,671,047 (+)NCBI
mRatBN7.2155,983,312 - 55,997,928 (+)NCBI
RefSeq Acc Id: XR_010054030
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,414 - 64,673,292 (+)NCBI
RefSeq Acc Id: XP_006228034   ⟸   XM_006227972
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A0K4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228036   ⟸   XM_006227974
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A0K4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228037   ⟸   XM_006227975
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A0K4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008757038   ⟸   XM_008758816
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008757039   ⟸   XM_008758817
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017445390   ⟸   XM_017589901
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSRNOP00000056590   ⟸   ENSRNOT00000059845
RefSeq Acc Id: XP_038956013   ⟸   XM_039100085
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A0K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956039   ⟸   XM_039100111
- Peptide Label: isoform X8
RefSeq Acc Id: ENSRNOP00000085620   ⟸   ENSRNOT00000119249
RefSeq Acc Id: NP_001406549   ⟸   NM_001419620
- UniProtKB: Q3B8R1 (UniProtKB/Swiss-Prot),   D3ZU62 (UniProtKB/Swiss-Prot),   A0A8I6A0K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122267   ⟸   XM_063266197
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063122272   ⟸   XM_063266202
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063122285   ⟸   XM_063266215
- Peptide Label: isoform X10
Protein Domains
DUF4209

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3B8R1-F1-model_v2 AlphaFold Q3B8R1 1-678 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689644
Promoter ID:EPDNEW_R166
Type:multiple initiation site
Name:Ermard_1
Description:ER membrane-associated RNA degradation
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0156,982,800 - 56,982,860EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309374 AgrOrtholog
BioCyc Gene G2FUF-61324 BioCyc
Ensembl Genes ENSRNOG00000015230 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055000059 UniProtKB/Swiss-Prot
  ENSRNOG00060001524 UniProtKB/Swiss-Prot
  ENSRNOG00065015188 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000059845 ENTREZGENE
  ENSRNOT00000059845.5 UniProtKB/Swiss-Prot
  ENSRNOT00000119249.1 UniProtKB/TrEMBL
  ENSRNOT00055000095 UniProtKB/Swiss-Prot
  ENSRNOT00060002281 UniProtKB/Swiss-Prot
  ENSRNOT00065025156 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7096546 IMAGE-MGC_LOAD
InterPro DUF4209 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ERMARD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361485 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94758 IMAGE-MGC_LOAD
NCBI Gene 361485 ENTREZGENE
PANTHER ENDOPLASMIC RETICULUM MEMBRANE-ASSOCIATED RNA DEGRADATION PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31701 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4209 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ermard PhenoGen
RatGTEx ENSRNOG00000015230 RatGTEx
  ENSRNOG00055000059 RatGTEx
  ENSRNOG00060001524 RatGTEx
  ENSRNOG00065015188 RatGTEx
UniProt A0A8I6A0K4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZU62 ENTREZGENE
  EMARD_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary D3ZU62 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Ermard  ER membrane-associated RNA degradation  RGD1309374  LOC361485  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309374  LOC361485  RGD1309374_predicted  LOC361485 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309374_predicted  LOC361485 (predicted)  LOC361485_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361485_predicted  LOC361485 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL