Wdr33 (WD repeat domain 33) - Rat Genome Database

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Gene: Wdr33 (WD repeat domain 33) Rattus norvegicus
Analyze
Symbol: Wdr33
Name: WD repeat domain 33
RGD ID: 1309230
Description: Predicted to be involved in mRNA polyadenylation. Predicted to be located in fibrillar center and nucleoplasm. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human WDR33 (WD repeat domain 33); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC307524; pre-mRNA 3' end processing protein WDR33; WD repeat-containing protein 33
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81823,706,708 - 23,812,985 (+)NCBIGRCr8
mRatBN7.21823,432,233 - 23,535,460 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1823,432,191 - 23,468,597 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1823,560,579 - 23,663,560 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01824,309,591 - 24,412,620 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01823,655,547 - 23,758,526 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01824,584,832 - 24,689,681 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1824,584,900 - 24,689,636 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01824,302,033 - 24,403,950 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41824,219,464 - 24,328,893 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11824,246,048 - 24,356,083 (+)NCBI
Celera1823,184,843 - 23,287,871 (+)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Pre-mRNA 3'-end processing complex assembly and function. Chan S, etal., Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):321-35. doi: 10.1002/wrna.54. Epub 2010 Oct 18.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors. Gruber AR, etal., Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):183-96. doi: 10.1002/wrna.1206. Epub 2013 Nov 14.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:11162572   PMID:22681889  


Genomics

Comparative Map Data
Wdr33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81823,706,708 - 23,812,985 (+)NCBIGRCr8
mRatBN7.21823,432,233 - 23,535,460 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1823,432,191 - 23,468,597 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1823,560,579 - 23,663,560 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01824,309,591 - 24,412,620 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01823,655,547 - 23,758,526 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01824,584,832 - 24,689,681 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1824,584,900 - 24,689,636 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01824,302,033 - 24,403,950 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41824,219,464 - 24,328,893 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11824,246,048 - 24,356,083 (+)NCBI
Celera1823,184,843 - 23,287,871 (+)NCBICelera
Cytogenetic Map18p12NCBI
WDR33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382127,701,027 - 127,811,171 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2127,701,027 - 127,811,187 (-)EnsemblGRCh38hg38GRCh38
GRCh372128,458,601 - 128,568,745 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362128,178,278 - 128,285,215 (-)NCBINCBI36Build 36hg18NCBI36
Build 342128,178,037 - 128,284,975NCBI
Celera2121,772,751 - 121,879,694 (-)NCBICelera
Cytogenetic Map2q14.3NCBI
HuRef2120,768,042 - 120,874,721 (-)NCBIHuRef
CHM1_12128,466,415 - 128,573,757 (-)NCBICHM1_1
T2T-CHM13v2.02128,136,260 - 128,246,425 (-)NCBIT2T-CHM13v2.0
Wdr33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391831,937,079 - 32,042,040 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1831,937,143 - 32,040,450 (+)EnsemblGRCm39 Ensembl
GRCm381831,804,057 - 31,908,987 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1831,804,090 - 31,907,397 (+)EnsemblGRCm38mm10GRCm38
MGSCv371831,963,711 - 32,068,641 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361831,970,295 - 32,050,005 (+)NCBIMGSCv36mm8
Celera1832,292,716 - 32,399,466 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1817.85NCBI
Wdr33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554592,740,466 - 2,841,376 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554592,740,465 - 2,841,376 (+)NCBIChiLan1.0ChiLan1.0
WDR33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21347,832,747 - 47,938,394 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B47,848,994 - 47,953,992 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B32,465,959 - 32,571,024 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B128,371,250 - 128,476,083 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B128,371,250 - 128,476,083 (-)Ensemblpanpan1.1panPan2
WDR33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11922,788,462 - 22,904,610 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1922,788,508 - 23,024,378 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1923,034,606 - 23,152,142 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01924,114,118 - 24,230,735 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1924,115,180 - 24,230,721 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11922,893,968 - 22,934,632 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01923,012,800 - 23,129,479 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01924,144,095 - 24,260,757 (+)NCBIUU_Cfam_GSD_1.0
Wdr33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530398,006,836 - 98,112,211 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646943,505,476 - 43,610,851 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646943,505,507 - 43,610,851 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1559,520,065 - 59,638,879 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11559,519,832 - 59,639,050 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21566,271,930 - 66,371,372 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1102,406,083 - 2,511,966 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl102,406,100 - 2,515,016 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606120,243,667 - 20,356,103 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473214,183,132 - 14,280,795 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473214,183,734 - 14,280,825 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr33
1157 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:45
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000017075
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat

Markers in Region
D18Chm1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21823,499,564 - 23,499,733 (+)MAPPERmRatBN7.2
Rnor_6.01824,654,463 - 24,654,630NCBIRnor6.0
Rnor_5.01824,368,444 - 24,368,611UniSTSRnor5.0
RGSC_v3.41824,286,413 - 24,286,580UniSTSRGSC3.4
Celera1823,252,087 - 23,252,254UniSTS
Cytogenetic Map18p12UniSTS
RH131944  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01824,619,520 - 24,619,727NCBIRnor6.0
Rnor_5.01824,336,718 - 24,336,925UniSTSRnor5.0
RGSC_v3.41824,254,085 - 24,254,292UniSTSRGSC3.4
Celera1823,219,409 - 23,219,616UniSTS
RH 3.4 Map18284.2UniSTS
Cytogenetic Map18p12UniSTS
BE116335  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21823,491,142 - 23,491,334 (+)MAPPERmRatBN7.2
Rnor_6.01824,643,755 - 24,643,946NCBIRnor6.0
Rnor_5.01824,360,953 - 24,361,144UniSTSRnor5.0
RGSC_v3.41824,278,339 - 24,278,530UniSTSRGSC3.4
Celera1823,243,645 - 23,243,836UniSTS
RH 3.4 Map18301.3UniSTS
Cytogenetic Map18p12UniSTS
MARC_7291-7292:992008311:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21823,531,686 - 23,533,200 (+)MAPPERmRatBN7.2
mRatBN7.2390,973,085 - 90,973,116 (+)MAPPERmRatBN7.2
Rnor_6.01824,685,825 - 24,687,377NCBIRnor6.0
Rnor_5.01824,400,118 - 24,401,670UniSTSRnor5.0
RGSC_v3.41824,325,124 - 24,326,636UniSTSRGSC3.4
Celera1823,284,100 - 23,285,612UniSTS
Cytogenetic Map18p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 54 38 19 38 8 9 74 35 41 11 8
Low 2 3 3 3 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017075   ⟹   ENSRNOP00000017075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1823,432,191 - 23,468,597 (+)Ensembl
Rnor_6.0 Ensembl1824,584,900 - 24,689,636 (+)Ensembl
RefSeq Acc Id: NM_001107398   ⟹   NP_001100868
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,706,715 - 23,809,685 (+)NCBI
mRatBN7.21823,432,233 - 23,535,460 (+)NCBI
Rnor_6.01824,584,900 - 24,689,636 (+)NCBI
Rnor_5.01824,302,033 - 24,403,950 (+)NCBI
RGSC_v3.41824,219,464 - 24,328,893 (+)RGD
Celera1823,184,843 - 23,287,871 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063277379   ⟹   XP_063133449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,706,708 - 23,812,985 (+)NCBI
RefSeq Acc Id: XM_063277380   ⟹   XP_063133450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,706,708 - 23,812,985 (+)NCBI
RefSeq Acc Id: XM_063277381   ⟹   XP_063133451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,706,708 - 23,812,985 (+)NCBI
RefSeq Acc Id: XM_063277382   ⟹   XP_063133452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,706,708 - 23,773,176 (+)NCBI
RefSeq Acc Id: XM_063277383   ⟹   XP_063133453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,706,708 - 23,757,455 (+)NCBI
RefSeq Acc Id: XM_063277384   ⟹   XP_063133454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,706,708 - 23,757,455 (+)NCBI
RefSeq Acc Id: XM_063277385   ⟹   XP_063133455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,706,708 - 23,749,177 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001100868   ⟸   NM_001107398
- UniProtKB: F1LT09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000017075   ⟸   ENSRNOT00000017075
RefSeq Acc Id: XP_063133449   ⟸   XM_063277379
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063133450   ⟸   XM_063277380
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133451   ⟸   XM_063277381
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063133452   ⟸   XM_063277382
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063133454   ⟸   XM_063277384
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063133453   ⟸   XM_063277383
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063133455   ⟸   XM_063277385
- Peptide Label: isoform X7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LT09-F1-model_v2 AlphaFold F1LT09 1-1331 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700676
Promoter ID:EPDNEW_R11200
Type:multiple initiation site
Name:Wdr33_1
Description:WD repeat domain 33
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01824,584,880 - 24,584,940EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309230 AgrOrtholog
BioCyc Gene G2FUF-8052 BioCyc
Ensembl Genes ENSRNOG00000011382 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017075.6 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Pfs2-like UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene 307524 ENTREZGENE
PANTHER PRE-MRNA 3' END PROCESSING PROTEIN WDR33 UniProtKB/TrEMBL
  PTHR22836 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Wdr33 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011382 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt F1LT09 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Wdr33  WD repeat domain 33   Wdr33_predicted  WD repeat domain 33 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Wdr33_predicted  WD repeat domain 33 (predicted)      Symbol and Name status set to approved 70820 APPROVED